Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4955

Experiment: Green bean; epiphytic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4954 and Psyr_4955 are separated by 27 nucleotidesPsyr_4955 and Psyr_4956 overlap by 1 nucleotides Psyr_4954: Psyr_4954 - Protein of unknown function DUF877, at 5,871,865 to 5,873,367 _4954 Psyr_4955: Psyr_4955 - Protein of unknown function DUF1316, at 5,873,395 to 5,873,877 _4955 Psyr_4956: Psyr_4956 - protein of unknown function DUF879, at 5,873,877 to 5,875,709 _4956 Position (kb) 5873 5874Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5872.402 kb on + strand, within Psyr_4954at 5872.402 kb on + strand, within Psyr_4954at 5872.402 kb on + strand, within Psyr_4954at 5872.402 kb on + strand, within Psyr_4954at 5872.402 kb on + strand, within Psyr_4954at 5872.402 kb on + strand, within Psyr_4954at 5872.402 kb on + strand, within Psyr_4954at 5872.402 kb on + strand, within Psyr_4954at 5872.403 kb on - strand, within Psyr_4954at 5872.403 kb on - strand, within Psyr_4954at 5872.403 kb on - strand, within Psyr_4954at 5872.403 kb on - strand, within Psyr_4954at 5872.403 kb on - strand, within Psyr_4954at 5872.403 kb on - strand, within Psyr_4954at 5872.403 kb on - strand, within Psyr_4954at 5872.403 kb on - strand, within Psyr_4954at 5872.403 kb on - strand, within Psyr_4954at 5872.403 kb on - strand, within Psyr_4954at 5872.403 kb on - strand, within Psyr_4954at 5872.403 kb on - strand, within Psyr_4954at 5872.403 kb on - strand, within Psyr_4954at 5872.403 kb on - strand, within Psyr_4954at 5872.403 kb on - strand, within Psyr_4954at 5872.546 kb on + strand, within Psyr_4954at 5872.547 kb on - strand, within Psyr_4954at 5872.702 kb on + strand, within Psyr_4954at 5872.702 kb on + strand, within Psyr_4954at 5872.702 kb on + strand, within Psyr_4954at 5872.703 kb on - strand, within Psyr_4954at 5872.703 kb on - strand, within Psyr_4954at 5872.703 kb on - strand, within Psyr_4954at 5872.724 kb on - strand, within Psyr_4954at 5872.827 kb on + strand, within Psyr_4954at 5872.828 kb on - strand, within Psyr_4954at 5872.828 kb on - strand, within Psyr_4954at 5872.828 kb on - strand, within Psyr_4954at 5872.828 kb on - strand, within Psyr_4954at 5872.828 kb on - strand, within Psyr_4954at 5872.828 kb on - strand, within Psyr_4954at 5872.955 kb on - strand, within Psyr_4954at 5872.999 kb on + strand, within Psyr_4954at 5872.999 kb on + strand, within Psyr_4954at 5872.999 kb on + strand, within Psyr_4954at 5872.999 kb on + strand, within Psyr_4954at 5872.999 kb on + strand, within Psyr_4954at 5873.000 kb on - strand, within Psyr_4954at 5873.000 kb on - strand, within Psyr_4954at 5873.000 kb on - strand, within Psyr_4954at 5873.050 kb on + strand, within Psyr_4954at 5873.050 kb on + strand, within Psyr_4954at 5873.050 kb on + strand, within Psyr_4954at 5873.050 kb on + strand, within Psyr_4954at 5873.050 kb on + strand, within Psyr_4954at 5873.050 kb on + strand, within Psyr_4954at 5873.050 kb on + strand, within Psyr_4954at 5873.050 kb on + strand, within Psyr_4954at 5873.050 kb on + strand, within Psyr_4954at 5873.051 kb on - strand, within Psyr_4954at 5873.051 kb on - strand, within Psyr_4954at 5873.051 kb on - strand, within Psyr_4954at 5873.051 kb on - strand, within Psyr_4954at 5873.051 kb on - strand, within Psyr_4954at 5873.051 kb on - strand, within Psyr_4954at 5873.051 kb on - strand, within Psyr_4954at 5873.051 kb on - strand, within Psyr_4954at 5873.051 kb on - strand, within Psyr_4954at 5873.051 kb on - strand, within Psyr_4954at 5873.051 kb on - strand, within Psyr_4954at 5873.051 kb on - strand, within Psyr_4954at 5873.051 kb on - strand, within Psyr_4954at 5873.051 kb on - strand, within Psyr_4954at 5873.051 kb on - strand, within Psyr_4954at 5873.051 kb on - strand, within Psyr_4954at 5873.051 kb on - strand, within Psyr_4954at 5873.051 kb on - strand, within Psyr_4954at 5873.051 kb on - strand, within Psyr_4954at 5873.051 kb on - strand, within Psyr_4954at 5873.051 kb on - strand, within Psyr_4954at 5873.070 kb on + strand, within Psyr_4954at 5873.080 kb on + strand, within Psyr_4954at 5873.080 kb on + strand, within Psyr_4954at 5873.080 kb on + strand, within Psyr_4954at 5873.080 kb on + strand, within Psyr_4954at 5873.081 kb on - strand, within Psyr_4954at 5873.081 kb on - strand, within Psyr_4954at 5873.081 kb on - strand, within Psyr_4954at 5873.167 kb on + strand, within Psyr_4954at 5873.167 kb on + strand, within Psyr_4954at 5873.167 kb on + strand, within Psyr_4954at 5873.167 kb on + strand, within Psyr_4954at 5873.167 kb on + strand, within Psyr_4954at 5873.167 kb on + strand, within Psyr_4954at 5873.168 kb on - strand, within Psyr_4954at 5873.168 kb on - strand, within Psyr_4954at 5873.168 kb on - strand, within Psyr_4954at 5873.168 kb on - strand, within Psyr_4954at 5873.168 kb on - strand, within Psyr_4954at 5873.168 kb on - strand, within Psyr_4954at 5873.168 kb on - strand, within Psyr_4954at 5873.269 kb on + strandat 5873.270 kb on - strandat 5873.284 kb on + strandat 5873.284 kb on + strandat 5873.284 kb on + strandat 5873.285 kb on - strandat 5873.285 kb on - strandat 5873.285 kb on - strandat 5873.285 kb on - strandat 5873.299 kb on + strandat 5873.299 kb on + strandat 5873.379 kb on + strandat 5873.380 kb on - strandat 5873.400 kb on + strandat 5873.400 kb on + strandat 5873.400 kb on + strandat 5873.401 kb on - strandat 5873.401 kb on - strandat 5873.401 kb on - strandat 5873.503 kb on + strand, within Psyr_4955at 5873.503 kb on + strand, within Psyr_4955at 5873.503 kb on + strand, within Psyr_4955at 5873.504 kb on - strand, within Psyr_4955at 5873.504 kb on - strandat 5873.611 kb on + strand, within Psyr_4955at 5873.634 kb on + strand, within Psyr_4955at 5873.786 kb on + strand, within Psyr_4955at 5873.854 kb on + strandat 5873.854 kb on + strandat 5873.855 kb on - strandat 5873.855 kb on - strandat 5873.855 kb on - strandat 5873.898 kb on + strandat 5873.899 kb on - strandat 5873.899 kb on - strandat 5873.901 kb on + strandat 5873.901 kb on + strandat 5874.123 kb on + strand, within Psyr_4956at 5874.123 kb on + strand, within Psyr_4956at 5874.123 kb on + strand, within Psyr_4956at 5874.123 kb on + strand, within Psyr_4956at 5874.123 kb on + strand, within Psyr_4956at 5874.123 kb on + strand, within Psyr_4956at 5874.123 kb on + strand, within Psyr_4956at 5874.124 kb on - strand, within Psyr_4956at 5874.124 kb on - strand, within Psyr_4956at 5874.124 kb on - strand, within Psyr_4956at 5874.280 kb on + strand, within Psyr_4956at 5874.280 kb on + strand, within Psyr_4956at 5874.471 kb on + strand, within Psyr_4956at 5874.471 kb on + strand, within Psyr_4956at 5874.471 kb on + strand, within Psyr_4956at 5874.471 kb on + strand, within Psyr_4956at 5874.471 kb on + strand, within Psyr_4956at 5874.471 kb on + strand, within Psyr_4956at 5874.471 kb on + strand, within Psyr_4956at 5874.471 kb on + strand, within Psyr_4956at 5874.472 kb on - strand, within Psyr_4956at 5874.472 kb on - strand, within Psyr_4956at 5874.472 kb on - strand, within Psyr_4956at 5874.472 kb on - strand, within Psyr_4956at 5874.472 kb on - strand, within Psyr_4956at 5874.472 kb on - strand, within Psyr_4956at 5874.603 kb on + strand, within Psyr_4956at 5874.645 kb on + strand, within Psyr_4956at 5874.645 kb on + strand, within Psyr_4956at 5874.645 kb on + strand, within Psyr_4956at 5874.645 kb on + strand, within Psyr_4956at 5874.646 kb on - strand, within Psyr_4956at 5874.646 kb on - strand, within Psyr_4956at 5874.741 kb on + strand, within Psyr_4956at 5874.753 kb on + strand, within Psyr_4956at 5874.753 kb on + strand, within Psyr_4956at 5874.754 kb on - strand, within Psyr_4956at 5874.754 kb on - strand, within Psyr_4956

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Per-strain Table

Position Strand Gene LocusTag Fraction Green bean; epiphytic
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5,872,402 + Psyr_4954 0.36 -0.3
5,872,402 + Psyr_4954 0.36 +0.3
5,872,402 + Psyr_4954 0.36 -0.0
5,872,402 + Psyr_4954 0.36 -0.4
5,872,402 + Psyr_4954 0.36 -0.1
5,872,402 + Psyr_4954 0.36 +0.4
5,872,402 + Psyr_4954 0.36 -2.6
5,872,402 + Psyr_4954 0.36 -0.6
5,872,403 - Psyr_4954 0.36 +0.5
5,872,403 - Psyr_4954 0.36 +0.2
5,872,403 - Psyr_4954 0.36 -0.6
5,872,403 - Psyr_4954 0.36 -0.4
5,872,403 - Psyr_4954 0.36 +0.7
5,872,403 - Psyr_4954 0.36 -0.0
5,872,403 - Psyr_4954 0.36 +0.2
5,872,403 - Psyr_4954 0.36 +1.8
5,872,403 - Psyr_4954 0.36 +0.3
5,872,403 - Psyr_4954 0.36 +0.4
5,872,403 - Psyr_4954 0.36 -0.2
5,872,403 - Psyr_4954 0.36 +0.7
5,872,403 - Psyr_4954 0.36 -0.6
5,872,403 - Psyr_4954 0.36 +0.2
5,872,403 - Psyr_4954 0.36 +1.8
5,872,546 + Psyr_4954 0.45 -0.3
5,872,547 - Psyr_4954 0.45 +0.7
5,872,702 + Psyr_4954 0.56 -0.4
5,872,702 + Psyr_4954 0.56 -0.0
5,872,702 + Psyr_4954 0.56 -0.5
5,872,703 - Psyr_4954 0.56 -0.0
5,872,703 - Psyr_4954 0.56 +0.5
5,872,703 - Psyr_4954 0.56 +0.3
5,872,724 - Psyr_4954 0.57 +0.9
5,872,827 + Psyr_4954 0.64 +0.1
5,872,828 - Psyr_4954 0.64 +3.5
5,872,828 - Psyr_4954 0.64 +0.9
5,872,828 - Psyr_4954 0.64 +2.2
5,872,828 - Psyr_4954 0.64 -1.3
5,872,828 - Psyr_4954 0.64 -0.2
5,872,828 - Psyr_4954 0.64 +0.2
5,872,955 - Psyr_4954 0.73 +2.6
5,872,999 + Psyr_4954 0.75 +0.3
5,872,999 + Psyr_4954 0.75 +1.1
5,872,999 + Psyr_4954 0.75 -0.3
5,872,999 + Psyr_4954 0.75 -1.7
5,872,999 + Psyr_4954 0.75 -0.4
5,873,000 - Psyr_4954 0.76 -0.6
5,873,000 - Psyr_4954 0.76 -0.0
5,873,000 - Psyr_4954 0.76 -2.0
5,873,050 + Psyr_4954 0.79 +1.3
5,873,050 + Psyr_4954 0.79 +1.3
5,873,050 + Psyr_4954 0.79 +0.2
5,873,050 + Psyr_4954 0.79 -0.5
5,873,050 + Psyr_4954 0.79 +1.9
5,873,050 + Psyr_4954 0.79 -0.3
5,873,050 + Psyr_4954 0.79 +0.8
5,873,050 + Psyr_4954 0.79 +1.0
5,873,050 + Psyr_4954 0.79 -1.0
5,873,051 - Psyr_4954 0.79 -0.5
5,873,051 - Psyr_4954 0.79 -1.3
5,873,051 - Psyr_4954 0.79 +1.5
5,873,051 - Psyr_4954 0.79 -0.9
5,873,051 - Psyr_4954 0.79 +0.3
5,873,051 - Psyr_4954 0.79 +0.4
5,873,051 - Psyr_4954 0.79 +1.6
5,873,051 - Psyr_4954 0.79 +0.1
5,873,051 - Psyr_4954 0.79 -1.5
5,873,051 - Psyr_4954 0.79 +0.1
5,873,051 - Psyr_4954 0.79 +0.1
5,873,051 - Psyr_4954 0.79 +0.1
5,873,051 - Psyr_4954 0.79 +0.4
5,873,051 - Psyr_4954 0.79 +1.3
5,873,051 - Psyr_4954 0.79 +1.1
5,873,051 - Psyr_4954 0.79 +0.1
5,873,051 - Psyr_4954 0.79 -0.0
5,873,051 - Psyr_4954 0.79 -0.4
5,873,051 - Psyr_4954 0.79 +1.0
5,873,051 - Psyr_4954 0.79 +0.7
5,873,051 - Psyr_4954 0.79 +0.3
5,873,070 + Psyr_4954 0.80 +0.2
5,873,080 + Psyr_4954 0.81 -1.0
5,873,080 + Psyr_4954 0.81 +0.8
5,873,080 + Psyr_4954 0.81 -0.0
5,873,080 + Psyr_4954 0.81 +0.1
5,873,081 - Psyr_4954 0.81 -0.7
5,873,081 - Psyr_4954 0.81 -0.4
5,873,081 - Psyr_4954 0.81 -0.7
5,873,167 + Psyr_4954 0.87 -1.4
5,873,167 + Psyr_4954 0.87 +1.1
5,873,167 + Psyr_4954 0.87 +0.3
5,873,167 + Psyr_4954 0.87 -0.1
5,873,167 + Psyr_4954 0.87 -2.3
5,873,167 + Psyr_4954 0.87 +1.9
5,873,168 - Psyr_4954 0.87 -1.0
5,873,168 - Psyr_4954 0.87 +0.1
5,873,168 - Psyr_4954 0.87 +1.3
5,873,168 - Psyr_4954 0.87 -0.4
5,873,168 - Psyr_4954 0.87 +2.1
5,873,168 - Psyr_4954 0.87 -0.6
5,873,168 - Psyr_4954 0.87 +1.1
5,873,269 + -0.8
5,873,270 - -1.3
5,873,284 + +0.7
5,873,284 + -1.3
5,873,284 + -2.0
5,873,285 - -0.0
5,873,285 - -0.4
5,873,285 - -1.5
5,873,285 - -0.8
5,873,299 + +0.8
5,873,299 + -1.2
5,873,379 + +0.9
5,873,380 - +1.0
5,873,400 + -0.9
5,873,400 + +2.3
5,873,400 + -0.0
5,873,401 - -1.5
5,873,401 - +0.7
5,873,401 - +0.1
5,873,503 + Psyr_4955 0.22 -1.2
5,873,503 + Psyr_4955 0.22 +1.3
5,873,503 + Psyr_4955 0.22 -1.9
5,873,504 - Psyr_4955 0.23 -0.4
5,873,504 - +0.5
5,873,611 + Psyr_4955 0.45 -0.8
5,873,634 + Psyr_4955 0.49 -0.7
5,873,786 + Psyr_4955 0.81 +1.3
5,873,854 + +0.5
5,873,854 + -1.2
5,873,855 - +0.6
5,873,855 - +0.3
5,873,855 - +0.7
5,873,898 + -0.1
5,873,899 - -0.3
5,873,899 - -1.1
5,873,901 + +1.1
5,873,901 + +1.0
5,874,123 + Psyr_4956 0.13 -0.6
5,874,123 + Psyr_4956 0.13 +0.6
5,874,123 + Psyr_4956 0.13 -0.2
5,874,123 + Psyr_4956 0.13 -1.1
5,874,123 + Psyr_4956 0.13 -0.5
5,874,123 + Psyr_4956 0.13 +1.3
5,874,123 + Psyr_4956 0.13 -1.4
5,874,124 - Psyr_4956 0.13 -0.7
5,874,124 - Psyr_4956 0.13 +1.1
5,874,124 - Psyr_4956 0.13 +0.3
5,874,280 + Psyr_4956 0.22 +0.8
5,874,280 + Psyr_4956 0.22 +0.7
5,874,471 + Psyr_4956 0.32 +1.0
5,874,471 + Psyr_4956 0.32 +1.6
5,874,471 + Psyr_4956 0.32 -0.7
5,874,471 + Psyr_4956 0.32 +0.3
5,874,471 + Psyr_4956 0.32 -0.2
5,874,471 + Psyr_4956 0.32 -0.3
5,874,471 + Psyr_4956 0.32 -0.1
5,874,471 + Psyr_4956 0.32 -0.7
5,874,472 - Psyr_4956 0.32 -0.6
5,874,472 - Psyr_4956 0.32 -0.4
5,874,472 - Psyr_4956 0.32 -0.7
5,874,472 - Psyr_4956 0.32 +1.1
5,874,472 - Psyr_4956 0.32 +0.7
5,874,472 - Psyr_4956 0.32 +0.8
5,874,603 + Psyr_4956 0.40 -0.1
5,874,645 + Psyr_4956 0.42 -0.7
5,874,645 + Psyr_4956 0.42 -0.1
5,874,645 + Psyr_4956 0.42 +0.0
5,874,645 + Psyr_4956 0.42 +1.0
5,874,646 - Psyr_4956 0.42 +0.3
5,874,646 - Psyr_4956 0.42 +0.6
5,874,741 + Psyr_4956 0.47 +0.9
5,874,753 + Psyr_4956 0.48 +1.6
5,874,753 + Psyr_4956 0.48 +0.2
5,874,754 - Psyr_4956 0.48 +0.1
5,874,754 - Psyr_4956 0.48 +1.7

Or see this region's nucleotide sequence