Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4642

Experiment: Green bean; epiphytic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Green bean; epiphytic
5,504,067	+				-1.6
5,504,176	-				-0.7
5,504,196	-				-0.3
5,504,196	-				+0.1
5,504,221	+				+0.1
5,504,221	+				+0.9
5,504,221	+				+0.2
5,504,222	-				+0.0
5,504,222	-				-0.5
5,504,222	-				-0.6
5,504,222	-				-0.1
5,504,222	-				+1.2
5,504,222	-				+0.6
5,504,227	+				+1.2
5,504,227	+				-0.7
5,504,227	+				+0.8
5,504,227	+				+0.6
5,504,227	+				+0.4
5,504,227	+				-1.1
5,504,227	+				-1.2
5,504,227	+				-0.7
5,504,227	+				+0.0
5,504,227	+				-0.7
5,504,227	+				+0.2
5,504,227	+				+2.0
5,504,227	+				+0.3
5,504,227	+				+1.2
5,504,227	+				+0.5
5,504,227	+				+0.2
5,504,227	+				-0.6
5,504,228	-				-0.4
5,504,228	-				-0.1
5,504,228	-				-0.6
5,504,228	-				-0.4
5,504,228	-				-2.4
5,504,228	-				+0.5
5,504,228	-				-1.1
5,504,228	-				+0.2
5,504,228	-				+0.3
5,504,228	-				-1.7
5,504,228	-				+0.2
5,504,228	-				-0.7
5,504,228	-				+0.2
5,504,228	-				+1.6
5,504,228	-				-1.6
5,504,228	-				-0.5
5,504,228	-				+0.1
5,504,231	+				-0.2
5,504,231	+				-0.6
5,504,231	+				+0.0
5,504,231	+				-0.6
5,504,231	+				+0.3
5,504,231	+				+1.5
5,504,232	-				-0.8
5,504,232	-				-0.5
5,504,232	-				-1.0
5,504,232	-				+0.3
5,504,232	-				+0.3
5,504,232	-				-0.6
5,504,232	-				-0.0
5,504,232	-				-1.3
5,504,232	-				-0.4
5,504,232	-				-0.7
5,504,232	-				-0.4
5,504,232	-				+0.8
5,504,232	-				+2.0
5,504,232	-				+0.2
5,504,232	-				-3.1
5,504,278	+				-1.1
5,504,278	+				-1.4
5,504,278	+				+0.5
5,504,278	+				+0.4
5,504,278	+				-1.1
5,504,278	+				+1.9
5,504,279	-				+0.2
5,504,279	-				-0.8
5,504,279	-				+1.0
5,504,279	-				+1.0
5,504,279	-				-0.9
5,504,279	-				-0.5
5,504,279	-				+0.6
5,504,279	-				-0.0
5,504,279	-				-2.4
5,504,279	-				-0.8
5,504,282	+				+1.4
5,504,282	+				-1.8
5,504,282	+				-0.1
5,504,283	-				-0.7
5,504,283	-				-0.4
5,504,283	-				-0.6
5,504,283	-				+0.6
5,504,328	+				+0.2
5,504,328	+				+0.9
5,504,328	+				-1.0
5,504,328	+				+0.1
5,504,329	-				+1.4
5,504,329	-				+0.9
5,504,329	-				-1.8
5,504,338	-				-0.6
5,504,338	-				+2.0
5,504,348	+				+0.0
5,504,349	-				-0.4
5,504,349	-				-0.7
5,504,349	-				+2.2
5,504,433	+				-0.9
5,504,484	-				-0.2
5,504,604	+		Psyr_4642	0.11	+0.8
5,504,615	+		Psyr_4642	0.11	-0.0
5,504,615	+		Psyr_4642	0.11	+0.0
5,504,680	-		Psyr_4642	0.14	-0.4
5,504,687	+		Psyr_4642	0.14	+0.5
5,504,705	+		Psyr_4642	0.15	+0.6
5,504,705	+		Psyr_4642	0.15	+0.2
5,504,706	-		Psyr_4642	0.15	+0.0
5,504,706	-		Psyr_4642	0.15	-1.1
5,504,747	+		Psyr_4642	0.16	+6.7
5,504,748	-		Psyr_4642	0.16	+0.8
5,504,748	-		Psyr_4642	0.16	+1.5
5,504,748	-		Psyr_4642	0.16	-0.4
5,504,748	-		Psyr_4642	0.16	-1.7
5,504,870	-		Psyr_4642	0.21	-0.8
5,504,881	+		Psyr_4642	0.22	-1.4
5,504,881	+		Psyr_4642	0.22	-0.2
5,505,081	+		Psyr_4642	0.30	+1.4
5,505,230	-		Psyr_4642	0.36	+1.2
5,505,230	-		Psyr_4642	0.36	+3.9
5,505,298	+		Psyr_4642	0.39	-0.2
5,505,494	-		Psyr_4642	0.46	-0.1
5,505,537	-		Psyr_4642	0.48	+1.2
5,505,537	-		Psyr_4642	0.48	-0.1
5,505,804	+		Psyr_4642	0.59	+0.7
5,505,805	-		Psyr_4642	0.59	+0.3
5,505,805	-		Psyr_4642	0.59	-0.7
5,505,805	-		Psyr_4642	0.59	-0.0
5,505,810	-		Psyr_4642	0.59	-0.9
5,505,856	+		Psyr_4642	0.61	-1.5
5,505,856	+		Psyr_4642	0.61	-1.1
5,505,856	+		Psyr_4642	0.61	+2.2
5,505,856	+		Psyr_4642	0.61	-0.5
5,505,856	+		Psyr_4642	0.61	-2.3
5,505,856	+		Psyr_4642	0.61	+0.0
5,505,856	+		Psyr_4642	0.61	-0.8
5,505,857	-		Psyr_4642	0.61	-0.8
5,505,857	-		Psyr_4642	0.61	+0.7
5,505,857	-		Psyr_4642	0.61	+0.9
5,505,857	-		Psyr_4642	0.61	-0.8
5,505,857	-		Psyr_4642	0.61	+0.3
5,505,943	+		Psyr_4642	0.65	-0.1
5,505,944	-		Psyr_4642	0.65	-0.4
5,505,944	-		Psyr_4642	0.65	+0.3
5,505,944	-		Psyr_4642	0.65	+0.4
5,505,982	+		Psyr_4642	0.66	-1.1
5,505,982	+		Psyr_4642	0.66	+0.1
5,505,982	+		Psyr_4642	0.66	+1.1
5,505,982	+		Psyr_4642	0.66	+0.4
5,505,983	-		Psyr_4642	0.66	-1.6
5,505,983	-		Psyr_4642	0.66	+0.1
5,505,983	-		Psyr_4642	0.66	-0.5
5,505,983	-		Psyr_4642	0.66	+0.2
5,505,983	-		Psyr_4642	0.66	-0.9
5,505,983	-		Psyr_4642	0.66	+0.6
5,505,983	-		Psyr_4642	0.66	+0.5
5,505,984	+		Psyr_4642	0.66	+1.4
5,505,984	+		Psyr_4642	0.66	-0.6
5,505,985	-		Psyr_4642	0.66	+0.6
5,505,985	-		Psyr_4642	0.66	+0.8
5,506,075	+		Psyr_4642	0.70	-0.4
5,506,254	+		Psyr_4642	0.77	+0.2
5,506,254	+		Psyr_4642	0.77	-0.3
5,506,254	+		Psyr_4642	0.77	+1.3
5,506,254	+		Psyr_4642	0.77	-0.3
5,506,254	+		Psyr_4642	0.77	+1.2
5,506,254	+		Psyr_4642	0.77	+2.2
5,506,254	+		Psyr_4642	0.77	-0.2
5,506,254	+		Psyr_4642	0.77	-1.3
5,506,255	-		Psyr_4642	0.77	-1.5
5,506,256	+		Psyr_4642	0.77	+0.4
5,506,256	+		Psyr_4642	0.77	+0.6
5,506,256	+		Psyr_4642	0.77	-2.3
5,506,256	+		Psyr_4642	0.77	+0.3
5,506,257	-		Psyr_4642	0.77	-0.9
5,506,257	-		Psyr_4642	0.77	+0.2
5,506,257	-		Psyr_4642	0.77	+0.6
5,506,257	-		Psyr_4642	0.77	-0.0
5,506,257	-		Psyr_4642	0.77	-0.2
5,506,257	-		Psyr_4642	0.77	+0.0
5,506,257	-		Psyr_4642	0.77	-0.3
5,506,516	+		Psyr_4642	0.88	+1.4
5,506,517	-		Psyr_4642	0.88	-0.5
5,506,517	-		Psyr_4642	0.88	+0.8
5,506,720	+				-0.7
5,506,720	+				-0.8
5,506,720	+				-1.0
5,506,721	-				+0.3
5,506,721	-				-0.2
5,506,820	+				+0.4
5,506,822	+				-0.6
5,506,973	-				-0.1
5,506,973	-				-0.1
5,506,989	+				+1.9
5,506,989	+				+0.6
5,506,989	+				-0.4
5,507,004	+				-0.1
5,507,004	+				+0.8
5,507,005	-				-2.1
5,507,005	-				-2.1
5,507,005	-				-0.3
5,507,033	-				+0.7
5,507,049	-				-0.2
5,507,084	-				-0.3
5,507,084	-				-0.1
5,507,086	-				+0.7
5,507,086	-				-0.2
5,507,104	+				+1.2
5,507,104	+				-0.6
5,507,104	+				-1.1
5,507,105	-				+0.5
5,507,110	+				+0.6
5,507,111	-				+0.3
5,507,111	-				-0.0
5,507,245	+		Psyr_4643	0.21	-0.1
5,507,245	+		Psyr_4643	0.21	-1.4
5,507,246	-		Psyr_4643	0.21	-0.1
5,507,246	-		Psyr_4643	0.21	+0.7
5,507,246	-		Psyr_4643	0.21	+1.0
5,507,256	+		Psyr_4643	0.22	+0.5
5,507,256	+		Psyr_4643	0.22	+0.3
5,507,256	+		Psyr_4643	0.22	-0.1
5,507,256	+		Psyr_4643	0.22	-0.2
5,507,256	+		Psyr_4643	0.22	+1.3
5,507,256	+		Psyr_4643	0.22	+1.0
5,507,256	+		Psyr_4643	0.22	+0.8
5,507,256	+		Psyr_4643	0.22	+1.7
5,507,256	+		Psyr_4643	0.22	+0.2
5,507,256	+		Psyr_4643	0.22	-0.7
5,507,257	-		Psyr_4643	0.22	+0.2
5,507,257	-		Psyr_4643	0.22	+0.4
5,507,257	-		Psyr_4643	0.22	+1.4
5,507,259	+		Psyr_4643	0.22	-1.1
5,507,260	-		Psyr_4643	0.22	+0.7
5,507,260	-		Psyr_4643	0.22	-0.2
5,507,260	-		Psyr_4643	0.22	+0.9
5,507,260	-		Psyr_4643	0.22	+0.6
5,507,269	+		Psyr_4643	0.23	+0.5
5,507,270	-		Psyr_4643	0.23	+0.9
5,507,270	-		Psyr_4643	0.23	+0.0
5,507,270	-		Psyr_4643	0.23	+0.3
5,507,317	+		Psyr_4643	0.28	-0.2
5,507,343	+		Psyr_4643	0.31	-0.4
5,507,343	+		Psyr_4643	0.31	+0.8
5,507,344	-		Psyr_4643	0.31	+2.1
5,507,344	-		Psyr_4643	0.31	+0.8
5,507,344	-		Psyr_4643	0.31	-0.2
5,507,344	-		Psyr_4643	0.31	-1.4
5,507,378	+		Psyr_4643	0.34	+0.3
5,507,379	-		Psyr_4643	0.35	-1.4
5,507,383	+		Psyr_4643	0.35	+2.6
5,507,383	+		Psyr_4643	0.35	+0.5
5,507,383	+		Psyr_4643	0.35	-0.5
5,507,383	+		Psyr_4643	0.35	+0.2
5,507,384	-		Psyr_4643	0.35	-0.2
5,507,384	-		Psyr_4643	0.35	-0.5
5,507,384	-		Psyr_4643	0.35	-0.8
5,507,384	-		Psyr_4643	0.35	-0.6
5,507,384	-		Psyr_4643	0.35	+0.9
5,507,384	-		Psyr_4643	0.35	-0.8
5,507,384	-		Psyr_4643	0.35	+0.3
5,507,384	-		Psyr_4643	0.35	+1.5
5,507,384	-		Psyr_4643	0.35	-1.4
5,507,389	+		Psyr_4643	0.36	-2.1
5,507,389	+		Psyr_4643	0.36	+0.3
5,507,390	-		Psyr_4643	0.36	-0.9
5,507,390	-		Psyr_4643	0.36	-0.1
5,507,410	+		Psyr_4643	0.38	+0.0
5,507,411	-		Psyr_4643	0.38	-0.0
5,507,434	+		Psyr_4643	0.40	-0.2
5,507,489	+		Psyr_4643	0.46	+0.1
5,507,490	-		Psyr_4643	0.46	+0.3
5,507,537	+		Psyr_4643	0.51	-0.4
5,507,538	-		Psyr_4643	0.51	+0.6
5,507,538	-		Psyr_4643	0.51	+2.1
5,507,543	-		Psyr_4643	0.51	+0.5
5,507,543	-		Psyr_4643	0.51	+0.5
5,507,543	-		Psyr_4643	0.51	-0.9
5,507,584	+		Psyr_4643	0.56	+0.2
5,507,584	+		Psyr_4643	0.56	-1.0
5,507,584	+		Psyr_4643	0.56	-0.2
5,507,585	-		Psyr_4643	0.56	-0.3
5,507,619	-		Psyr_4643	0.59	+0.1
5,507,663	+		Psyr_4643	0.64	-0.7
5,507,663	+		Psyr_4643	0.64	-1.0
5,507,663	+		Psyr_4643	0.64	-0.3
5,507,664	-		Psyr_4643	0.64	-1.0
5,507,673	+		Psyr_4643	0.65	-0.4
5,507,760	+		Psyr_4643	0.74	-0.1
5,507,760	+		Psyr_4643	0.74	-0.4