Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4053

Experiment: Green bean; epiphytic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Green bean; epiphytic
4,834,710	+		Psyr_4052	0.23	+0.4
4,834,710	+		Psyr_4052	0.23	-1.9
4,834,711	-		Psyr_4052	0.23	+0.5
4,834,711	-		Psyr_4052	0.23	-0.8
4,834,861	+		Psyr_4052	0.36	+0.5
4,834,862	-		Psyr_4052	0.36	+0.1
4,835,100	+		Psyr_4052	0.57	-0.6
4,835,100	+		Psyr_4052	0.57	-0.4
4,835,100	+		Psyr_4052	0.57	-1.6
4,835,100	+		Psyr_4052	0.57	+0.0
4,835,100	+		Psyr_4052	0.57	-0.8
4,835,100	+		Psyr_4052	0.57	-0.8
4,835,100	+		Psyr_4052	0.57	+1.3
4,835,100	+		Psyr_4052	0.57	+1.5
4,835,100	+		Psyr_4052	0.57	-0.6
4,835,100	+		Psyr_4052	0.57	+0.7
4,835,100	+		Psyr_4052	0.57	+0.6
4,835,100	+		Psyr_4052	0.57	+0.1
4,835,100	+		Psyr_4052	0.57	+1.3
4,835,100	+		Psyr_4052	0.57	+0.5
4,835,101	-		Psyr_4052	0.57	+0.4
4,835,101	-		Psyr_4052	0.57	+0.5
4,835,101	-		Psyr_4052	0.57	-0.8
4,835,101	-		Psyr_4052	0.57	+0.4
4,835,101	-		Psyr_4052	0.57	-1.6
4,835,101	-		Psyr_4052	0.57	-1.1
4,835,101	-		Psyr_4052	0.57	+0.3
4,835,101	-		Psyr_4052	0.57	-1.5
4,835,101	-		Psyr_4052	0.57	+0.6
4,835,101	-		Psyr_4052	0.57	-0.7
4,835,135	-		Psyr_4052	0.60	-0.4
4,835,135	-		Psyr_4052	0.60	+0.4
4,835,278	+		Psyr_4052	0.72	+0.0
4,835,558	+				+0.0
4,835,559	-				-0.7
4,835,598	-				-0.2
4,835,612	+				+0.3
4,835,612	+				+2.8
4,835,613	-				-2.6
4,835,625	+				+0.2
4,835,637	-				+0.5
4,835,752	-		Psyr_4053	0.12	+1.7
4,835,752	-		Psyr_4053	0.12	-1.1
4,835,752	-		Psyr_4053	0.12	+0.2
4,835,752	-		Psyr_4053	0.12	+0.6
4,835,752	-		Psyr_4053	0.12	-0.1
4,835,752	-		Psyr_4053	0.12	-0.3
4,835,754	+		Psyr_4053	0.12	+0.9
4,835,754	+		Psyr_4053	0.12	+0.5
4,835,754	+		Psyr_4053	0.12	-0.2
4,835,754	+		Psyr_4053	0.12	+0.9
4,835,754	+		Psyr_4053	0.12	-0.2
4,835,755	-		Psyr_4053	0.12	+0.3
4,835,755	-		Psyr_4053	0.12	-0.5
4,835,755	-		Psyr_4053	0.12	+2.1
4,835,861	-		Psyr_4053	0.22	-0.1
4,835,955	+		Psyr_4053	0.31	-0.6
4,836,043	+		Psyr_4053	0.40	+0.4
4,836,043	+		Psyr_4053	0.40	-0.3
4,836,044	-		Psyr_4053	0.40	-1.1
4,836,044	-		Psyr_4053	0.40	+0.7
4,836,159	+		Psyr_4053	0.51	-0.3
4,836,159	+		Psyr_4053	0.51	+0.4
4,836,160	-		Psyr_4053	0.51	+0.8
4,836,292	+		Psyr_4053	0.63	+0.8
4,836,292	+		Psyr_4053	0.63	+1.3
4,836,292	+		Psyr_4053	0.63	+0.7
4,836,292	+		Psyr_4053	0.63	-0.5
4,836,293	-		Psyr_4053	0.63	-0.6
4,836,293	-		Psyr_4053	0.63	-0.6
4,836,293	-		Psyr_4053	0.63	-0.1
4,836,293	-		Psyr_4053	0.63	+0.5
4,836,293	-		Psyr_4053	0.63	-0.5
4,836,293	-		Psyr_4053	0.63	+1.5
4,836,293	-		Psyr_4053	0.63	-1.4
4,836,293	-		Psyr_4053	0.63	-0.1
4,836,293	-		Psyr_4053	0.63	-0.4
4,836,363	+		Psyr_4053	0.70	+2.2
4,836,364	-		Psyr_4053	0.70	+1.3
4,836,364	-		Psyr_4053	0.70	+0.3
4,836,364	-		Psyr_4053	0.70	+0.2
4,836,364	-		Psyr_4053	0.70	-0.1
4,836,364	-		Psyr_4053	0.70	+0.4
4,836,471	+		Psyr_4053	0.80	+0.6
4,836,471	+		Psyr_4053	0.80	+0.7
4,836,472	-		Psyr_4053	0.80	+0.1
4,836,472	-		Psyr_4053	0.80	+0.2
4,836,472	-		Psyr_4053	0.80	+0.4
4,836,472	-		Psyr_4053	0.80	-0.4
4,836,473	+		Psyr_4053	0.80	+0.2
4,836,474	-		Psyr_4053	0.81	+0.6
4,836,558	+		Psyr_4053	0.89	-0.6
4,836,558	+		Psyr_4053	0.89	-1.0
4,836,558	+		Psyr_4053	0.89	-0.4
4,836,558	+		Psyr_4053	0.89	+0.2
4,836,559	-		Psyr_4053	0.89	+0.2
4,836,559	-		Psyr_4053	0.89	-0.9
4,836,559	-		Psyr_4053	0.89	+1.6
4,836,559	-		Psyr_4053	0.89	-0.6
4,836,559	-		Psyr_4053	0.89	-0.5
4,836,559	-		Psyr_4053	0.89	+0.9
4,836,633	+				+0.5
4,836,655	-				+0.5
4,836,655	-				-1.2
4,836,655	-				-0.6
4,836,675	+				+0.9
4,836,675	+				-0.2
4,836,676	-				-0.6
4,836,728	+				-0.3
4,836,740	-				+1.1
4,836,740	-				+5.5
4,836,740	-				+0.2
4,836,777	+				+0.8
4,836,777	+				-0.1
4,836,777	+				-1.2
4,836,777	+				+1.9
4,836,778	-				-0.6
4,836,778	-				-0.6
4,836,781	+				-0.3
4,836,781	+				-0.2
4,836,781	+				+0.4
4,836,781	+				+2.2
4,836,781	+				+0.0
4,836,781	+				-0.4
4,836,781	+				-1.2
4,836,782	-				-1.7
4,836,782	-				-0.3
4,836,782	-				+0.1
4,836,782	-				-0.9
4,836,782	-				+0.3
4,836,782	-				+0.2
4,836,782	-				-1.1
4,836,782	-				+0.3
4,836,782	-				+0.7
4,836,782	-				+1.5
4,836,784	+				-0.3
4,836,784	+				-2.1
4,836,784	+				-0.1
4,836,784	+				+2.9
4,836,784	+				-0.6
4,836,784	+				+0.3
4,836,784	+				+0.4
4,836,784	+				+0.4
4,836,784	+				+0.1
4,836,784	+				-1.9
4,836,784	+				+1.1
4,836,785	-				+0.3
4,836,785	-				+0.1
4,836,785	-				+0.8
4,836,785	-				-1.4
4,836,785	-				+0.1
4,836,785	-				-0.3
4,836,785	-				+0.5
4,836,785	-				-0.6
4,836,785	-				-0.0
4,836,912	+		Psyr_4054	0.21	-1.3
4,836,912	+		Psyr_4054	0.21	+0.8
4,836,912	+		Psyr_4054	0.21	+0.9
4,836,913	-		Psyr_4054	0.21	-1.3
4,836,913	-		Psyr_4054	0.21	+1.1
4,837,099	+		Psyr_4054	0.46	+0.9
4,837,099	+		Psyr_4054	0.46	-0.7
4,837,100	-		Psyr_4054	0.46	+0.2
4,837,100	-		Psyr_4054	0.46	-0.8
4,837,100	-		Psyr_4054	0.46	-0.1
4,837,100	-		Psyr_4054	0.46	+0.1
4,837,165	-		Psyr_4054	0.54	-1.5
4,837,390	+		Psyr_4054	0.84	+0.2
4,837,390	+		Psyr_4054	0.84	-0.1
4,837,390	+		Psyr_4054	0.84	-0.2
4,837,483	-				-0.5
4,837,528	+				+0.4
4,837,528	+				+1.2
4,837,574	+				+0.4
4,837,574	+				+0.8
4,837,574	+				+0.8
4,837,574	+				+0.4
4,837,575	-				-0.1
4,837,575	-				-0.1
4,837,575	-				+0.9
4,837,575	-				+0.9
4,837,575	-				-0.9
4,837,575	-				+0.0
4,837,576	+				+1.8
4,837,576	+				+0.4
4,837,576	+				+0.6
4,837,576	+				-0.6
4,837,576	+				+0.3
4,837,576	+				-0.3
4,837,576	+				-0.1
4,837,576	+				-0.1
4,837,576	+				-0.5
4,837,576	+				-0.3
4,837,576	+				-0.5
4,837,576	+				+0.1
4,837,576	+				+0.2
4,837,576	+				-0.1
4,837,576	+				-0.1
4,837,576	+				+1.8
4,837,576	+				+0.7
4,837,576	+				+0.5
4,837,576	+				+0.6
4,837,576	+				+0.2
4,837,576	+				+0.4
4,837,576	+				+0.3
4,837,576	+				+0.9
4,837,576	+				-0.9
4,837,576	+				-0.2
4,837,576	+				-0.8
4,837,577	-				-0.6
4,837,577	-				+1.1
4,837,577	-				-0.5
4,837,577	-				+0.9
4,837,577	-				+0.9
4,837,577	-				-0.9
4,837,577	-				-0.4
4,837,577	-				-2.1
4,837,577	-				+0.9
4,837,577	-				+0.6
4,837,577	-				-0.5
4,837,577	-				-1.1
4,837,577	-				+0.9
4,837,577	-				-0.6
4,837,577	-				-0.8
4,837,577	-				+0.2
4,837,577	-				+0.9
4,837,577	-				+1.9
4,837,577	-				+0.3
4,837,577	-				+0.8
4,837,577	-				+0.1
4,837,577	-				-0.2
4,837,577	-				+0.6
4,837,577	-				-0.1
4,837,577	-				+0.1
4,837,577	-				-0.5
4,837,577	-				+0.4
4,837,580	+				+1.9
4,837,580	+				+1.5
4,837,580	+				+0.8
4,837,580	+				-0.6
4,837,580	+				+0.1
4,837,580	+				+0.9
4,837,580	+				+0.4
4,837,581	-				+0.3
4,837,581	-				-1.0
4,837,581	-				-1.4
4,837,581	-				+0.2
4,837,581	-				+0.2
4,837,581	-				-1.2
4,837,581	-				-0.1