Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2648

Experiment: Green bean; epiphytic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Green bean; epiphytic
3,218,295	+				-0.1
3,218,296	-				+0.5
3,218,327	+				-2.3
3,218,327	+				-1.5
3,218,328	-				-0.1
3,218,328	-				+2.0
3,218,328	-				-0.2
3,218,328	-				-0.9
3,218,379	+				-1.4
3,218,457	-		Psyr_2647	0.12	+1.7
3,218,457	-		Psyr_2647	0.12	-1.5
3,218,457	-		Psyr_2647	0.12	+1.0
3,218,492	+		Psyr_2647	0.16	+0.4
3,218,492	+		Psyr_2647	0.16	+0.1
3,218,493	-		Psyr_2647	0.16	+0.7
3,218,549	+		Psyr_2647	0.22	+1.9
3,218,550	-		Psyr_2647	0.22	-0.2
3,218,577	-		Psyr_2647	0.26	+0.9
3,218,577	-		Psyr_2647	0.26	+0.7
3,218,790	-		Psyr_2647	0.50	+0.3
3,218,806	+		Psyr_2647	0.51	-1.7
3,218,806	+		Psyr_2647	0.51	+0.5
3,218,806	+		Psyr_2647	0.51	+1.0
3,218,806	+		Psyr_2647	0.51	-0.8
3,218,825	+		Psyr_2647	0.54	+0.3
3,218,825	+		Psyr_2647	0.54	-0.0
3,218,826	-		Psyr_2647	0.54	-0.6
3,218,826	-		Psyr_2647	0.54	+0.7
3,218,826	-		Psyr_2647	0.54	-0.8
3,218,826	-		Psyr_2647	0.54	+1.3
3,218,909	+		Psyr_2647	0.63	-0.6
3,218,910	-		Psyr_2647	0.63	+0.1
3,218,985	+				-2.0
3,218,985	+		Psyr_2647	0.72	+0.3
3,218,986	-		Psyr_2647	0.72	-0.2
3,218,986	-		Psyr_2647	0.72	+1.1
3,218,986	-		Psyr_2647	0.72	-0.1
3,219,012	-		Psyr_2647	0.75	+0.1
3,219,041	-		Psyr_2647	0.78	-0.2
3,219,095	-		Psyr_2647	0.84	-0.4
3,219,235	+				-1.3
3,219,272	-				-1.5
3,219,272	-				-2.4
3,219,425	+		Psyr_2648	0.17	-1.4
3,219,425	+		Psyr_2648	0.17	-1.3
3,219,425	+		Psyr_2648	0.17	+0.3
3,219,425	+		Psyr_2648	0.17	-0.5
3,219,425	+		Psyr_2648	0.17	-1.4
3,219,426	-		Psyr_2648	0.17	-3.0
3,219,426	-				+0.3
3,219,426	-		Psyr_2648	0.17	-0.7
3,219,426	-		Psyr_2648	0.17	-1.0
3,219,430	+		Psyr_2648	0.18	-1.6
3,219,530	+		Psyr_2648	0.26	+0.4
3,219,531	-		Psyr_2648	0.26	-0.7
3,219,531	-		Psyr_2648	0.26	-1.3
3,219,552	-		Psyr_2648	0.28	-1.0
3,219,552	-		Psyr_2648	0.28	-2.9
3,219,552	-		Psyr_2648	0.28	+1.3
3,219,563	+		Psyr_2648	0.29	-1.1
3,219,563	+		Psyr_2648	0.29	+0.3
3,219,564	-		Psyr_2648	0.29	-1.8
3,219,564	-		Psyr_2648	0.29	-1.2
3,219,564	-		Psyr_2648	0.29	-2.3
3,219,577	+		Psyr_2648	0.30	-1.3
3,219,577	+		Psyr_2648	0.30	-1.6
3,219,577	+		Psyr_2648	0.30	+0.3
3,219,578	-		Psyr_2648	0.30	-0.3
3,219,578	-		Psyr_2648	0.30	-1.7
3,219,578	-		Psyr_2648	0.30	-0.7
3,219,578	-		Psyr_2648	0.30	-2.0
3,219,625	-		Psyr_2648	0.34	-1.4
3,219,674	-		Psyr_2648	0.38	-0.2
3,219,763	+		Psyr_2648	0.46	+0.7
3,219,764	-		Psyr_2648	0.46	+2.3
3,219,764	-		Psyr_2648	0.46	+0.7
3,219,766	+		Psyr_2648	0.46	-1.5
3,219,767	-		Psyr_2648	0.46	+0.3
3,219,767	-		Psyr_2648	0.46	+0.8
3,219,767	-		Psyr_2648	0.46	-0.9
3,219,767	-		Psyr_2648	0.46	+0.8
3,219,861	+		Psyr_2648	0.54	+0.8
3,219,861	+		Psyr_2648	0.54	-1.1
3,219,861	+		Psyr_2648	0.54	-0.2
3,219,862	-		Psyr_2648	0.54	-0.4
3,219,862	-		Psyr_2648	0.54	-1.0
3,219,862	-		Psyr_2648	0.54	-1.0
3,219,862	-		Psyr_2648	0.54	-2.0
3,219,862	-		Psyr_2648	0.54	+0.3
3,219,862	-		Psyr_2648	0.54	-0.2
3,219,865	+		Psyr_2648	0.54	-0.3
3,219,865	+		Psyr_2648	0.54	-0.2
3,219,865	+		Psyr_2648	0.54	-2.0
3,219,865	+		Psyr_2648	0.54	+0.3
3,219,866	-		Psyr_2648	0.54	+0.5
3,219,866	-		Psyr_2648	0.54	+0.3
3,219,874	+		Psyr_2648	0.55	+1.3
3,219,888	-		Psyr_2648	0.56	+0.9
3,219,888	-		Psyr_2648	0.56	+0.6
3,219,936	+		Psyr_2648	0.60	+0.9
3,219,936	+		Psyr_2648	0.60	-1.9
3,219,936	+		Psyr_2648	0.60	-0.3
3,219,936	+		Psyr_2648	0.60	+1.3
3,219,937	-		Psyr_2648	0.60	-0.1
3,219,937	-		Psyr_2648	0.60	+0.3
3,219,945	+		Psyr_2648	0.61	-1.3
3,219,945	+		Psyr_2648	0.61	+1.9
3,219,946	-		Psyr_2648	0.61	-0.7
3,219,970	+		Psyr_2648	0.63	+0.5
3,219,970	+		Psyr_2648	0.63	+0.3
3,219,987	-		Psyr_2648	0.64	+0.6
3,219,987	-		Psyr_2648	0.64	-1.4
3,220,020	+		Psyr_2648	0.67	-0.5
3,220,021	-		Psyr_2648	0.67	+1.9
3,220,035	-		Psyr_2648	0.68	-0.1
3,220,035	-		Psyr_2648	0.68	-0.3
3,220,047	+		Psyr_2648	0.69	+2.1
3,220,047	+		Psyr_2648	0.69	-0.7
3,220,048	-		Psyr_2648	0.70	+0.1
3,220,121	+		Psyr_2648	0.76	+0.4
3,220,121	+		Psyr_2648	0.76	-1.2
3,220,121	+		Psyr_2648	0.76	-1.3
3,220,122	-		Psyr_2648	0.76	-0.5
3,220,152	-		Psyr_2648	0.78	-1.0
3,220,152	-		Psyr_2648	0.78	-0.2
3,220,246	+		Psyr_2648	0.86	-1.3
3,220,436	+				+1.2
3,220,436	+				+0.1
3,220,437	-				+0.1
3,220,437	-				+0.3
3,220,594	+		Psyr_2649	0.10	+3.1
3,220,594	+		Psyr_2649	0.10	-0.1
3,220,594	+		Psyr_2649	0.10	-0.9
3,220,594	+		Psyr_2649	0.10	-0.1
3,220,595	-		Psyr_2649	0.10	+0.3
3,220,595	-		Psyr_2649	0.10	+0.5
3,220,595	-		Psyr_2649	0.10	+0.1
3,220,595	-		Psyr_2649	0.10	+1.4
3,220,598	+		Psyr_2649	0.11	-0.3
3,220,599	-		Psyr_2649	0.11	-0.0
3,220,636	+		Psyr_2649	0.15	-0.5
3,220,637	-		Psyr_2649	0.15	+0.6
3,220,637	-		Psyr_2649	0.15	+0.3
3,220,637	-		Psyr_2649	0.15	+1.3
3,220,687	+		Psyr_2649	0.20	-1.0
3,220,688	-				+0.3
3,220,688	-		Psyr_2649	0.20	-4.4
3,220,689	+		Psyr_2649	0.20	+0.7
3,220,689	+		Psyr_2649	0.20	-0.3
3,220,689	+		Psyr_2649	0.20	-0.3
3,220,690	-		Psyr_2649	0.20	-1.7
3,220,690	-		Psyr_2649	0.20	-0.4
3,220,696	+		Psyr_2649	0.21	+0.3
3,220,696	+		Psyr_2649	0.21	-1.3
3,220,696	+		Psyr_2649	0.21	+0.2
3,220,741	+		Psyr_2649	0.25	+0.0
3,220,742	-		Psyr_2649	0.25	-0.7
3,220,765	-		Psyr_2649	0.28	-0.9
3,221,030	+		Psyr_2649	0.55	-0.4
3,221,030	+		Psyr_2649	0.55	-1.5
3,221,030	+		Psyr_2649	0.55	+0.6
3,221,030	+		Psyr_2649	0.55	-0.0
3,221,030	+		Psyr_2649	0.55	+0.5
3,221,030	+		Psyr_2649	0.55	+0.5
3,221,030	+		Psyr_2649	0.55	+0.6
3,221,030	+		Psyr_2649	0.55	+1.3
3,221,030	+		Psyr_2649	0.55	-0.2
3,221,030	+		Psyr_2649	0.55	+0.0
3,221,031	-		Psyr_2649	0.55	+2.3
3,221,031	-		Psyr_2649	0.55	-0.6
3,221,031	-		Psyr_2649	0.55	-0.7
3,221,031	-		Psyr_2649	0.55	+0.4
3,221,031	-		Psyr_2649	0.55	-0.1
3,221,031	-		Psyr_2649	0.55	-0.3
3,221,031	-		Psyr_2649	0.55	-0.2
3,221,031	-		Psyr_2649	0.55	+0.6
3,221,032	+		Psyr_2649	0.55	+0.1
3,221,032	+		Psyr_2649	0.55	+0.7
3,221,033	-		Psyr_2649	0.55	-0.3
3,221,033	-		Psyr_2649	0.55	+0.0
3,221,033	-		Psyr_2649	0.55	-0.4
3,221,033	-				+0.9
3,221,101	+		Psyr_2649	0.62	-1.4
3,221,137	-		Psyr_2649	0.65	+0.4
3,221,232	+		Psyr_2649	0.75	-0.0
3,221,361	+		Psyr_2649	0.88	+0.3
3,221,361	+		Psyr_2649	0.88	+1.9
3,221,361	+		Psyr_2649	0.88	-0.8
3,221,361	+		Psyr_2649	0.88	+1.7
3,221,361	+		Psyr_2649	0.88	+1.0
3,221,361	+		Psyr_2649	0.88	+0.1
3,221,361	+		Psyr_2649	0.88	-0.9
3,221,361	+		Psyr_2649	0.88	+1.0
3,221,361	+		Psyr_2649	0.88	+0.0
3,221,361	+		Psyr_2649	0.88	-2.0
3,221,361	+		Psyr_2649	0.88	+0.3
3,221,361	+		Psyr_2649	0.88	+1.3
3,221,361	+		Psyr_2649	0.88	+1.4
3,221,361	+		Psyr_2649	0.88	-0.3
3,221,361	+		Psyr_2649	0.88	-0.0
3,221,361	+		Psyr_2649	0.88	-0.7
3,221,361	+		Psyr_2649	0.88	-1.7
3,221,361	+		Psyr_2649	0.88	+1.2
3,221,361	+		Psyr_2649	0.88	-2.9
3,221,361	+		Psyr_2649	0.88	+4.1
3,221,362	-		Psyr_2649	0.88	-1.0
3,221,362	-		Psyr_2649	0.88	+0.6
3,221,362	-		Psyr_2649	0.88	+0.7
3,221,362	-		Psyr_2649	0.88	+0.3
3,221,362	-		Psyr_2649	0.88	-1.0
3,221,362	-		Psyr_2649	0.88	-0.5
3,221,362	-		Psyr_2649	0.88	-0.5
3,221,362	-		Psyr_2649	0.88	+0.6
3,221,362	-		Psyr_2649	0.88	+0.3
3,221,362	-		Psyr_2649	0.88	-1.1
3,221,362	-		Psyr_2649	0.88	-0.3
3,221,362	-		Psyr_2649	0.88	+0.3
3,221,362	-		Psyr_2649	0.88	+0.5
3,221,362	-		Psyr_2649	0.88	+1.3
3,221,378	-				+1.6