Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1560

Experiment: Green bean; epiphytic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Green bean; epiphytic
1,754,519	+		Psyr_1559	0.33	+0.2
1,754,519	+		Psyr_1559	0.33	+0.5
1,754,519	+		Psyr_1559	0.33	+0.3
1,754,519	+		Psyr_1559	0.33	+0.2
1,754,519	+		Psyr_1559	0.33	-1.4
1,754,519	+		Psyr_1559	0.33	+0.2
1,754,519	+		Psyr_1559	0.33	+0.5
1,754,519	+		Psyr_1559	0.33	-1.9
1,754,519	+		Psyr_1559	0.33	-1.6
1,754,519	+		Psyr_1559	0.33	+1.0
1,754,519	+		Psyr_1559	0.33	-0.6
1,754,519	+		Psyr_1559	0.33	-0.4
1,754,519	+		Psyr_1559	0.33	-0.3
1,754,519	+		Psyr_1559	0.33	+1.7
1,754,520	-				-0.9
1,754,520	-		Psyr_1559	0.33	-0.5
1,754,520	-		Psyr_1559	0.33	+1.4
1,754,520	-		Psyr_1559	0.33	-0.3
1,754,520	-		Psyr_1559	0.33	+0.3
1,754,520	-		Psyr_1559	0.33	-0.6
1,754,520	-		Psyr_1559	0.33	+0.4
1,754,520	-		Psyr_1559	0.33	-0.1
1,754,520	-		Psyr_1559	0.33	+2.3
1,754,520	-		Psyr_1559	0.33	+1.3
1,754,520	-		Psyr_1559	0.33	-1.0
1,754,742	+		Psyr_1559	0.56	-0.6
1,754,881	+		Psyr_1559	0.70	-0.9
1,754,881	+		Psyr_1559	0.70	-0.6
1,754,881	+		Psyr_1559	0.70	+0.5
1,754,882	-		Psyr_1559	0.71	+0.3
1,754,882	-		Psyr_1559	0.71	-0.3
1,754,882	-		Psyr_1559	0.71	+1.3
1,754,911	-		Psyr_1559	0.74	+0.5
1,754,958	+		Psyr_1559	0.78	+0.9
1,755,128	-				+0.5
1,755,203	+				+0.3
1,755,204	-				-0.2
1,755,205	+				-0.8
1,755,205	+				-0.1
1,755,205	+				+0.7
1,755,206	-				+0.8
1,755,267	+				-0.1
1,755,267	+				+1.5
1,755,267	+				+0.7
1,755,268	-				-0.2
1,755,314	+				-0.4
1,755,314	+				+0.9
1,755,314	+				+0.3
1,755,314	+				+0.2
1,755,315	-				+0.1
1,755,315	-				-0.3
1,755,346	-				+1.6
1,755,359	-				+0.4
1,755,359	-				+0.3
1,755,362	+				+0.7
1,755,363	-				-0.2
1,755,385	-				-0.5
1,755,385	-				+1.8
1,755,385	-				-0.4
1,755,385	-				-1.9
1,755,385	-				+0.3
1,755,423	+				-1.0
1,755,423	+				+0.6
1,755,423	+				+0.0
1,755,423	+				-0.1
1,755,423	+				+0.9
1,755,424	-				-0.8
1,755,424	-				-0.3
1,755,424	-				+0.7
1,755,424	-				-0.8
1,755,424	-				-0.9
1,755,424	-				-2.0
1,755,424	-				+0.6
1,755,424	-				-0.1
1,755,425	+				+0.3
1,755,425	+				-1.0
1,755,426	-				+0.6
1,755,459	+				-1.0
1,755,459	+				-0.0
1,755,460	-				+0.1
1,755,475	+				-0.1
1,755,475	+				+1.1
1,755,476	-				-0.9
1,755,476	-				-0.9
1,755,476	-				+0.3
1,755,476	-				+0.5
1,755,476	-				+2.0
1,755,476	-				+0.8
1,755,476	-				-0.0
1,755,484	+				-0.6
1,755,485	-				+1.3
1,755,485	-				-0.4
1,755,675	+		Psyr_1560	0.43	-0.1
1,755,675	+		Psyr_1560	0.43	+0.2
1,755,676	-		Psyr_1560	0.44	+1.2
1,755,676	-		Psyr_1560	0.44	+0.7
1,755,676	-		Psyr_1560	0.44	+1.7
1,755,676	-		Psyr_1560	0.44	-0.3
1,755,676	-		Psyr_1560	0.44	+0.3
1,755,698	+		Psyr_1560	0.48	-0.5
1,755,699	-		Psyr_1560	0.48	+0.7
1,755,834	+		Psyr_1560	0.76	+0.9
1,755,834	+		Psyr_1560	0.76	+0.3
1,755,834	+		Psyr_1560	0.76	+2.3
1,755,835	-		Psyr_1560	0.77	-2.1
1,755,835	-		Psyr_1560	0.77	+1.0
1,755,920	+				-0.6
1,755,921	-				-0.3
1,755,921	-				-0.1
1,756,051	+				+1.6
1,756,111	+				+0.7
1,756,111	+				-1.4
1,756,111	+				+2.5
1,756,111	+				-0.3
1,756,111	+				-0.2
1,756,111	+				-1.9
1,756,111	+				-0.1
1,756,111	+				+5.4
1,756,111	+				-1.1
1,756,111	+				+0.3
1,756,111	+				-1.5
1,756,111	+				-0.4
1,756,111	+				-0.5
1,756,111	+				-0.2
1,756,111	+				-2.1
1,756,111	+				-0.3
1,756,111	+				+0.7
1,756,111	+				+3.0
1,756,111	+				+0.3
1,756,111	+				+0.1
1,756,111	+				-0.9
1,756,111	+				-0.6
1,756,111	+				+0.1
1,756,111	+				-1.1
1,756,111	+				-1.3
1,756,112	-				+0.2
1,756,112	-				-2.5
1,756,112	-				+1.1
1,756,112	-				-2.2
1,756,112	-				-0.3
1,756,112	-				-0.9
1,756,112	-				-0.1
1,756,112	-				-0.5
1,756,112	-				-0.9
1,756,112	-				+0.9
1,756,112	-				+0.7
1,756,112	-				+1.7
1,756,112	-				+0.5
1,756,112	-				+0.7
1,756,112	-				+0.4
1,756,112	-				+1.3
1,756,112	-				-0.0
1,756,230	-				-0.2
1,756,285	+				-0.1
1,756,286	-				-0.1
1,756,286	-				-0.6
1,756,400	+				+0.1
1,756,400	+				-0.1
1,756,401	-				+0.8
1,756,401	-				-0.3
1,756,401	-				-0.4
1,756,441	+		Psyr_1561	0.12	-0.9
1,756,473	+		Psyr_1561	0.14	+0.2
1,756,473	+		Psyr_1561	0.14	+1.4
1,756,473	+		Psyr_1561	0.14	-0.9
1,756,473	+		Psyr_1561	0.14	-0.5
1,756,473	+		Psyr_1561	0.14	-0.1
1,756,473	+		Psyr_1561	0.14	+0.5
1,756,473	+		Psyr_1561	0.14	+0.0
1,756,473	+		Psyr_1561	0.14	-1.6
1,756,474	-		Psyr_1561	0.14	-0.1
1,756,474	-		Psyr_1561	0.14	+1.0
1,756,474	-		Psyr_1561	0.14	+0.5
1,756,474	-		Psyr_1561	0.14	+0.4
1,756,474	-		Psyr_1561	0.14	-0.7
1,756,474	-		Psyr_1561	0.14	-0.6
1,756,474	-		Psyr_1561	0.14	-0.3
1,756,474	-		Psyr_1561	0.14	-0.9
1,756,474	-		Psyr_1561	0.14	-0.1
1,756,474	-		Psyr_1561	0.14	+0.5
1,756,474	-		Psyr_1561	0.14	-2.3
1,756,477	+		Psyr_1561	0.14	-0.2
1,756,477	+		Psyr_1561	0.14	-1.3
1,756,477	+		Psyr_1561	0.14	+0.3
1,756,477	+		Psyr_1561	0.14	+0.6
1,756,477	+		Psyr_1561	0.14	-1.3
1,756,478	-		Psyr_1561	0.14	+0.9
1,756,478	-		Psyr_1561	0.14	+0.2
1,756,478	-		Psyr_1561	0.14	+1.4
1,756,478	-		Psyr_1561	0.14	-0.4
1,756,478	-		Psyr_1561	0.14	+0.4
1,756,561	+		Psyr_1561	0.19	+0.2
1,756,561	+		Psyr_1561	0.19	-0.8
1,756,562	-		Psyr_1561	0.19	-0.0
1,756,606	+		Psyr_1561	0.22	+0.6
1,756,606	+		Psyr_1561	0.22	-0.3
1,756,786	+		Psyr_1561	0.32	+1.1
1,756,786	+		Psyr_1561	0.32	-1.3
1,756,787	-		Psyr_1561	0.32	-0.0
1,756,879	+		Psyr_1561	0.38	+0.0
1,756,879	+		Psyr_1561	0.38	+0.4
1,756,879	+				+0.1
1,756,879	+		Psyr_1561	0.38	+0.5
1,756,879	+		Psyr_1561	0.38	+0.1
1,756,879	+		Psyr_1561	0.38	-0.9
1,756,879	+		Psyr_1561	0.38	+0.7
1,756,879	+		Psyr_1561	0.38	-1.2
1,756,879	+		Psyr_1561	0.38	+1.6
1,756,879	+		Psyr_1561	0.38	+0.2
1,756,879	+		Psyr_1561	0.38	+2.1
1,756,880	-		Psyr_1561	0.38	-1.3
1,756,880	-		Psyr_1561	0.38	+2.3
1,756,880	-		Psyr_1561	0.38	+0.7
1,756,880	-		Psyr_1561	0.38	-0.1
1,756,880	-		Psyr_1561	0.38	-1.3
1,756,880	-		Psyr_1561	0.38	+0.1
1,756,880	-		Psyr_1561	0.38	+0.3
1,756,880	-		Psyr_1561	0.38	-0.6
1,756,880	-		Psyr_1561	0.38	-1.3
1,756,880	-		Psyr_1561	0.38	-0.3
1,756,880	-		Psyr_1561	0.38	-0.9
1,756,880	-		Psyr_1561	0.38	+0.2
1,756,880	-		Psyr_1561	0.38	+0.1
1,756,918	+		Psyr_1561	0.40	+1.1
1,756,919	-		Psyr_1561	0.40	+0.4