Experiment: Green bean; epiphytic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0590 and Psyr_0591 are separated by 152 nucleotides Psyr_0591 and Psyr_0592 are separated by 77 nucleotides Psyr_0592 and Psyr_0593 overlap by 1 nucleotides
Psyr_0590: Psyr_0590 - Transglutaminase-like protein, at 678,987 to 679,880
_0590
Psyr_0591: Psyr_0591 - Blue (type 1) copper domain protein, at 680,033 to 680,479
_0591
Psyr_0592: Psyr_0592 - Integrase, catalytic region, at 680,557 to 681,393
_0592
Psyr_0593: Psyr_0593 - ISPsy9, transposase OrfA, at 681,393 to 681,932
_0593
Position (kb) 680
681 Strain fitness (log2 ratio) -2
-1
0
1
2 at 679.308 kb on + strand, within Psyr_0590 at 679.308 kb on + strand, within Psyr_0590 at 679.308 kb on + strand, within Psyr_0590 at 679.308 kb on + strand, within Psyr_0590 at 679.308 kb on + strand, within Psyr_0590 at 679.308 kb on + strand, within Psyr_0590 at 679.309 kb on - strand, within Psyr_0590 at 679.309 kb on - strand, within Psyr_0590 at 679.447 kb on + strand, within Psyr_0590 at 679.448 kb on - strand, within Psyr_0590 at 679.611 kb on + strand, within Psyr_0590 at 679.612 kb on - strand, within Psyr_0590 at 679.696 kb on + strand, within Psyr_0590 at 679.697 kb on - strand, within Psyr_0590 at 679.878 kb on + strand at 679.878 kb on + strand at 679.882 kb on + strand at 679.990 kb on + strand at 679.990 kb on + strand at 679.990 kb on + strand at 679.990 kb on + strand at 679.990 kb on + strand at 679.990 kb on + strand at 679.990 kb on + strand at 679.990 kb on + strand at 679.990 kb on + strand at 679.990 kb on + strand at 679.990 kb on + strand at 679.991 kb on - strand at 679.991 kb on - strand at 679.991 kb on - strand at 679.991 kb on - strand at 679.991 kb on - strand at 679.991 kb on - strand at 679.991 kb on - strand at 679.991 kb on - strand at 679.991 kb on - strand at 680.001 kb on + strand at 680.001 kb on + strand at 680.002 kb on - strand at 680.135 kb on + strand, within Psyr_0591 at 680.135 kb on + strand, within Psyr_0591 at 680.135 kb on + strand, within Psyr_0591 at 680.135 kb on + strand, within Psyr_0591 at 680.135 kb on + strand, within Psyr_0591 at 680.135 kb on + strand, within Psyr_0591 at 680.135 kb on + strand, within Psyr_0591 at 680.136 kb on - strand, within Psyr_0591 at 680.136 kb on - strand, within Psyr_0591 at 680.136 kb on - strand, within Psyr_0591 at 680.136 kb on - strand, within Psyr_0591 at 680.136 kb on - strand, within Psyr_0591 at 680.136 kb on - strand, within Psyr_0591 at 680.136 kb on - strand, within Psyr_0591 at 680.136 kb on - strand, within Psyr_0591 at 680.136 kb on - strand, within Psyr_0591 at 680.230 kb on + strand, within Psyr_0591 at 680.231 kb on - strand, within Psyr_0591 at 680.306 kb on + strand, within Psyr_0591 at 680.306 kb on + strand, within Psyr_0591 at 680.306 kb on + strand, within Psyr_0591 at 680.306 kb on + strand, within Psyr_0591 at 680.307 kb on - strand, within Psyr_0591 at 680.307 kb on - strand, within Psyr_0591 at 680.414 kb on + strand, within Psyr_0591 at 680.415 kb on - strand, within Psyr_0591 at 680.477 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Green bean; epiphytic remove 679,308 + Psyr_0590 0.36 +0.7 679,308 + Psyr_0590 0.36 +0.5 679,308 + Psyr_0590 0.36 +0.4 679,308 + Psyr_0590 0.36 +1.0 679,308 + Psyr_0590 0.36 -0.3 679,308 + Psyr_0590 0.36 +0.3 679,309 - Psyr_0590 0.36 +0.1 679,309 - Psyr_0590 0.36 -0.7 679,447 + Psyr_0590 0.51 +1.5 679,448 - Psyr_0590 0.52 -0.6 679,611 + Psyr_0590 0.70 -0.5 679,612 - Psyr_0590 0.70 +0.1 679,696 + Psyr_0590 0.79 +0.6 679,697 - Psyr_0590 0.79 +0.7 679,878 + +0.5 679,878 + +0.9 679,882 + -0.9 679,990 + +1.0 679,990 + -0.9 679,990 + +0.0 679,990 + +0.1 679,990 + +0.3 679,990 + -1.3 679,990 + +0.9 679,990 + -1.4 679,990 + -0.7 679,990 + +2.0 679,990 + +0.1 679,991 - -1.0 679,991 - +0.6 679,991 - -0.7 679,991 - +0.1 679,991 - -1.4 679,991 - -1.4 679,991 - +1.1 679,991 - +0.2 679,991 - +0.8 680,001 + -0.4 680,001 + -0.2 680,002 - +1.1 680,135 + Psyr_0591 0.23 +1.1 680,135 + Psyr_0591 0.23 +1.4 680,135 + Psyr_0591 0.23 +0.1 680,135 + Psyr_0591 0.23 -1.7 680,135 + Psyr_0591 0.23 -0.6 680,135 + Psyr_0591 0.23 -1.1 680,135 + Psyr_0591 0.23 +1.7 680,136 - Psyr_0591 0.23 -2.0 680,136 - Psyr_0591 0.23 -0.1 680,136 - Psyr_0591 0.23 +0.9 680,136 - Psyr_0591 0.23 +0.7 680,136 - Psyr_0591 0.23 -0.7 680,136 - Psyr_0591 0.23 -0.7 680,136 - Psyr_0591 0.23 +1.1 680,136 - Psyr_0591 0.23 -0.5 680,136 - Psyr_0591 0.23 -1.0 680,230 + Psyr_0591 0.44 -0.6 680,231 - Psyr_0591 0.44 -0.1 680,306 + Psyr_0591 0.61 +0.5 680,306 + Psyr_0591 0.61 -0.4 680,306 + Psyr_0591 0.61 -0.9 680,306 + Psyr_0591 0.61 +0.7 680,307 - Psyr_0591 0.61 -1.3 680,307 - Psyr_0591 0.61 +0.0 680,414 + Psyr_0591 0.85 -0.2 680,415 - Psyr_0591 0.85 -0.7 680,477 + +0.4
Or see this region's nucleotide sequence