Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0585

Experiment: Green bean; epiphytic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0583 and Psyr_0584 are separated by 19 nucleotidesPsyr_0584 and Psyr_0585 are separated by 123 nucleotidesPsyr_0585 and Psyr_0586 are separated by 59 nucleotides Psyr_0583: Psyr_0583 - membrane protein, putative, at 664,305 to 665,201 _0583 Psyr_0584: Psyr_0584 - LSU ribosomal protein L9P, at 665,221 to 665,667 _0584 Psyr_0585: Psyr_0585 - primary replicative DNA helicase, at 665,791 to 667,185 _0585 Psyr_0586: Psyr_0586 - YD repeat protein, at 667,245 to 670,115 _0586 Position (kb) 665 666 667 668Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 664.845 kb on + strand, within Psyr_0583at 664.845 kb on + strand, within Psyr_0583at 664.845 kb on + strand, within Psyr_0583at 664.845 kb on + strand, within Psyr_0583at 664.845 kb on + strand, within Psyr_0583at 664.845 kb on + strand, within Psyr_0583at 664.964 kb on + strand, within Psyr_0583at 664.964 kb on + strand, within Psyr_0583at 665.064 kb on + strand, within Psyr_0583at 665.064 kb on + strand, within Psyr_0583at 665.064 kb on + strand, within Psyr_0583at 665.064 kb on + strand, within Psyr_0583at 665.064 kb on + strand, within Psyr_0583at 665.064 kb on + strand, within Psyr_0583at 665.064 kb on + strand, within Psyr_0583at 665.064 kb on + strand, within Psyr_0583at 665.064 kb on + strand, within Psyr_0583at 665.064 kb on + strand, within Psyr_0583at 665.064 kb on + strand, within Psyr_0583at 665.064 kb on + strand, within Psyr_0583at 665.064 kb on + strand, within Psyr_0583at 665.064 kb on + strand, within Psyr_0583at 665.064 kb on + strand, within Psyr_0583at 665.064 kb on + strand, within Psyr_0583at 665.113 kb on + strandat 665.206 kb on + strandat 665.301 kb on + strand, within Psyr_0584at 665.305 kb on + strand, within Psyr_0584at 665.454 kb on + strand, within Psyr_0584at 665.630 kb on + strandat 665.665 kb on + strandat 665.676 kb on + strandat 665.729 kb on + strandat 665.729 kb on + strandat 665.729 kb on + strandat 667.165 kb on + strandat 667.165 kb on + strandat 667.165 kb on + strandat 667.247 kb on - strandat 667.247 kb on - strandat 667.247 kb on - strandat 667.276 kb on + strandat 667.276 kb on + strandat 667.277 kb on - strandat 667.277 kb on - strandat 667.308 kb on + strandat 667.308 kb on + strandat 667.381 kb on - strandat 667.403 kb on + strandat 667.478 kb on + strandat 667.478 kb on + strandat 667.479 kb on - strandat 667.479 kb on - strandat 667.479 kb on - strandat 667.518 kb on - strandat 667.592 kb on + strand, within Psyr_0586at 667.592 kb on + strand, within Psyr_0586at 667.592 kb on + strand, within Psyr_0586at 667.592 kb on + strand, within Psyr_0586at 667.592 kb on + strand, within Psyr_0586at 667.592 kb on + strand, within Psyr_0586at 667.592 kb on + strand, within Psyr_0586at 667.592 kb on + strand, within Psyr_0586at 667.593 kb on - strand, within Psyr_0586at 667.593 kb on - strand, within Psyr_0586at 667.593 kb on - strand, within Psyr_0586at 667.593 kb on - strand, within Psyr_0586at 667.593 kb on - strand, within Psyr_0586at 667.593 kb on - strand, within Psyr_0586at 667.593 kb on - strand, within Psyr_0586at 667.593 kb on - strand, within Psyr_0586at 667.593 kb on - strand, within Psyr_0586at 667.593 kb on - strand, within Psyr_0586at 667.593 kb on - strand, within Psyr_0586at 667.593 kb on - strand, within Psyr_0586at 667.661 kb on + strand, within Psyr_0586at 667.664 kb on + strand, within Psyr_0586at 667.664 kb on + strand, within Psyr_0586at 667.664 kb on + strand, within Psyr_0586at 667.664 kb on + strand, within Psyr_0586at 667.664 kb on + strand, within Psyr_0586at 667.664 kb on + strand, within Psyr_0586at 667.664 kb on + strand, within Psyr_0586at 667.664 kb on + strand, within Psyr_0586at 667.664 kb on + strand, within Psyr_0586at 667.664 kb on + strand, within Psyr_0586at 667.664 kb on + strand, within Psyr_0586at 667.664 kb on + strand, within Psyr_0586at 667.664 kb on + strand, within Psyr_0586at 667.665 kb on - strand, within Psyr_0586at 667.665 kb on - strand, within Psyr_0586at 667.665 kb on - strand, within Psyr_0586at 667.665 kb on - strand, within Psyr_0586at 667.665 kb on - strand, within Psyr_0586at 667.665 kb on - strand, within Psyr_0586at 667.665 kb on - strandat 667.665 kb on - strand, within Psyr_0586at 667.665 kb on - strand, within Psyr_0586at 667.665 kb on - strand, within Psyr_0586at 667.665 kb on - strand, within Psyr_0586at 667.665 kb on - strand, within Psyr_0586at 667.665 kb on - strand, within Psyr_0586at 667.665 kb on - strand, within Psyr_0586at 667.689 kb on + strand, within Psyr_0586at 667.846 kb on + strand, within Psyr_0586at 667.846 kb on + strand, within Psyr_0586at 667.846 kb on + strand, within Psyr_0586at 667.849 kb on + strand, within Psyr_0586at 667.849 kb on + strand, within Psyr_0586at 667.849 kb on + strand, within Psyr_0586at 667.850 kb on - strand, within Psyr_0586at 667.850 kb on - strand, within Psyr_0586at 667.850 kb on - strand, within Psyr_0586at 667.850 kb on - strand, within Psyr_0586at 667.850 kb on - strand, within Psyr_0586at 667.850 kb on - strand, within Psyr_0586at 667.857 kb on + strand, within Psyr_0586at 667.857 kb on + strand, within Psyr_0586at 667.858 kb on - strand, within Psyr_0586at 667.890 kb on + strand, within Psyr_0586at 667.890 kb on + strand, within Psyr_0586at 667.891 kb on - strand, within Psyr_0586at 667.892 kb on + strand, within Psyr_0586at 667.994 kb on + strand, within Psyr_0586at 667.995 kb on - strand, within Psyr_0586at 667.996 kb on + strand, within Psyr_0586at 667.996 kb on + strand, within Psyr_0586at 667.996 kb on + strand, within Psyr_0586at 667.996 kb on + strand, within Psyr_0586at 667.996 kb on + strand, within Psyr_0586at 667.997 kb on - strand, within Psyr_0586at 667.997 kb on - strand, within Psyr_0586at 668.005 kb on - strand, within Psyr_0586at 668.005 kb on - strand, within Psyr_0586at 668.035 kb on + strand, within Psyr_0586at 668.036 kb on - strand, within Psyr_0586at 668.036 kb on - strand, within Psyr_0586at 668.036 kb on - strand, within Psyr_0586at 668.040 kb on + strand, within Psyr_0586at 668.040 kb on + strand, within Psyr_0586at 668.040 kb on + strand, within Psyr_0586at 668.040 kb on + strand, within Psyr_0586at 668.041 kb on - strand, within Psyr_0586at 668.081 kb on + strand, within Psyr_0586at 668.081 kb on + strand, within Psyr_0586at 668.084 kb on + strand, within Psyr_0586at 668.084 kb on + strand, within Psyr_0586at 668.084 kb on + strand, within Psyr_0586at 668.084 kb on + strand, within Psyr_0586at 668.085 kb on - strand, within Psyr_0586at 668.085 kb on - strand, within Psyr_0586at 668.085 kb on - strand, within Psyr_0586at 668.085 kb on - strand, within Psyr_0586at 668.085 kb on - strand, within Psyr_0586at 668.085 kb on - strand, within Psyr_0586

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Per-strain Table

Position Strand Gene LocusTag Fraction Green bean; epiphytic
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664,845 + Psyr_0583 0.60 -1.2
664,845 + Psyr_0583 0.60 -0.4
664,845 + Psyr_0583 0.60 +0.2
664,845 + Psyr_0583 0.60 +1.6
664,845 + Psyr_0583 0.60 +1.3
664,845 + Psyr_0583 0.60 -1.4
664,964 + Psyr_0583 0.73 +1.1
664,964 + Psyr_0583 0.73 +0.7
665,064 + Psyr_0583 0.85 +0.8
665,064 + Psyr_0583 0.85 -0.3
665,064 + Psyr_0583 0.85 +0.8
665,064 + Psyr_0583 0.85 -0.5
665,064 + Psyr_0583 0.85 +0.1
665,064 + Psyr_0583 0.85 +1.5
665,064 + Psyr_0583 0.85 -0.2
665,064 + Psyr_0583 0.85 -0.7
665,064 + Psyr_0583 0.85 -0.4
665,064 + Psyr_0583 0.85 +2.7
665,064 + Psyr_0583 0.85 +0.4
665,064 + Psyr_0583 0.85 +0.3
665,064 + Psyr_0583 0.85 +1.1
665,064 + Psyr_0583 0.85 -2.2
665,064 + Psyr_0583 0.85 -0.4
665,064 + Psyr_0583 0.85 +0.5
665,113 + +0.3
665,206 + +0.6
665,301 + Psyr_0584 0.18 +0.1
665,305 + Psyr_0584 0.19 -1.4
665,454 + Psyr_0584 0.52 +0.8
665,630 + -2.0
665,665 + -1.4
665,676 + -2.6
665,729 + +0.4
665,729 + -0.2
665,729 + +0.4
667,165 + -0.1
667,165 + +0.9
667,165 + +0.3
667,247 - -0.3
667,247 - +0.4
667,247 - -1.9
667,276 + +1.1
667,276 + -0.4
667,277 - +0.7
667,277 - -2.0
667,308 + +1.2
667,308 + -1.3
667,381 - -0.0
667,403 + +0.6
667,478 + +0.6
667,478 + +1.0
667,479 - +0.8
667,479 - +1.5
667,479 - -1.9
667,518 - +0.4
667,592 + Psyr_0586 0.12 -0.0
667,592 + Psyr_0586 0.12 -0.4
667,592 + Psyr_0586 0.12 +0.1
667,592 + Psyr_0586 0.12 +1.4
667,592 + Psyr_0586 0.12 +0.1
667,592 + Psyr_0586 0.12 +0.1
667,592 + Psyr_0586 0.12 -1.5
667,592 + Psyr_0586 0.12 -0.7
667,593 - Psyr_0586 0.12 -1.2
667,593 - Psyr_0586 0.12 -0.2
667,593 - Psyr_0586 0.12 -0.3
667,593 - Psyr_0586 0.12 +0.6
667,593 - Psyr_0586 0.12 +0.4
667,593 - Psyr_0586 0.12 +0.1
667,593 - Psyr_0586 0.12 -1.7
667,593 - Psyr_0586 0.12 +0.2
667,593 - Psyr_0586 0.12 -0.4
667,593 - Psyr_0586 0.12 +0.1
667,593 - Psyr_0586 0.12 +0.9
667,593 - Psyr_0586 0.12 +0.7
667,661 + Psyr_0586 0.14 +0.5
667,664 + Psyr_0586 0.15 +0.7
667,664 + Psyr_0586 0.15 +1.1
667,664 + Psyr_0586 0.15 +0.3
667,664 + Psyr_0586 0.15 +0.1
667,664 + Psyr_0586 0.15 -0.7
667,664 + Psyr_0586 0.15 -1.1
667,664 + Psyr_0586 0.15 -0.1
667,664 + Psyr_0586 0.15 +1.1
667,664 + Psyr_0586 0.15 -0.2
667,664 + Psyr_0586 0.15 +1.1
667,664 + Psyr_0586 0.15 +1.4
667,664 + Psyr_0586 0.15 +0.1
667,664 + Psyr_0586 0.15 -0.4
667,665 - Psyr_0586 0.15 +3.2
667,665 - Psyr_0586 0.15 -1.4
667,665 - Psyr_0586 0.15 -1.2
667,665 - Psyr_0586 0.15 +0.1
667,665 - Psyr_0586 0.15 +1.1
667,665 - Psyr_0586 0.15 +1.7
667,665 - +1.1
667,665 - Psyr_0586 0.15 +1.0
667,665 - Psyr_0586 0.15 +0.5
667,665 - Psyr_0586 0.15 -0.2
667,665 - Psyr_0586 0.15 +2.1
667,665 - Psyr_0586 0.15 -0.4
667,665 - Psyr_0586 0.15 -0.4
667,665 - Psyr_0586 0.15 +0.7
667,689 + Psyr_0586 0.15 +0.8
667,846 + Psyr_0586 0.21 +0.7
667,846 + Psyr_0586 0.21 -1.7
667,846 + Psyr_0586 0.21 +0.6
667,849 + Psyr_0586 0.21 +0.0
667,849 + Psyr_0586 0.21 +0.1
667,849 + Psyr_0586 0.21 -0.0
667,850 - Psyr_0586 0.21 +0.5
667,850 - Psyr_0586 0.21 +0.4
667,850 - Psyr_0586 0.21 +0.3
667,850 - Psyr_0586 0.21 -0.7
667,850 - Psyr_0586 0.21 +0.1
667,850 - Psyr_0586 0.21 +0.1
667,857 + Psyr_0586 0.21 -0.2
667,857 + Psyr_0586 0.21 -0.2
667,858 - Psyr_0586 0.21 +2.5
667,890 + Psyr_0586 0.22 +1.0
667,890 + Psyr_0586 0.22 -0.4
667,891 - Psyr_0586 0.23 -1.0
667,892 + Psyr_0586 0.23 -0.6
667,994 + Psyr_0586 0.26 -0.6
667,995 - Psyr_0586 0.26 +1.4
667,996 + Psyr_0586 0.26 +0.1
667,996 + Psyr_0586 0.26 -0.6
667,996 + Psyr_0586 0.26 -1.8
667,996 + Psyr_0586 0.26 -0.2
667,996 + Psyr_0586 0.26 +0.4
667,997 - Psyr_0586 0.26 -1.2
667,997 - Psyr_0586 0.26 +1.6
668,005 - Psyr_0586 0.26 -0.9
668,005 - Psyr_0586 0.26 -0.1
668,035 + Psyr_0586 0.28 +1.1
668,036 - Psyr_0586 0.28 -0.9
668,036 - Psyr_0586 0.28 -0.9
668,036 - Psyr_0586 0.28 -1.6
668,040 + Psyr_0586 0.28 -0.6
668,040 + Psyr_0586 0.28 -0.9
668,040 + Psyr_0586 0.28 -0.6
668,040 + Psyr_0586 0.28 +0.7
668,041 - Psyr_0586 0.28 -0.8
668,081 + Psyr_0586 0.29 +3.5
668,081 + Psyr_0586 0.29 +0.5
668,084 + Psyr_0586 0.29 -0.4
668,084 + Psyr_0586 0.29 +4.8
668,084 + Psyr_0586 0.29 +1.2
668,084 + Psyr_0586 0.29 -0.9
668,085 - Psyr_0586 0.29 +0.5
668,085 - Psyr_0586 0.29 -0.7
668,085 - Psyr_0586 0.29 +0.7
668,085 - Psyr_0586 0.29 +0.7
668,085 - Psyr_0586 0.29 -0.4
668,085 - Psyr_0586 0.29 +0.6

Or see this region's nucleotide sequence