Experiment: Green bean; epiphytic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0283 and Psyr_0284 are separated by 245 nucleotides Psyr_0284 and Psyr_0285 are separated by 69 nucleotides Psyr_0285 and Psyr_0286 are separated by 247 nucleotides
Psyr_0283: Psyr_0283 - NLPA lipoprotein, at 301,667 to 302,440
_0283
Psyr_0284: Psyr_0284 - Electron transport protein SCO1/SenC, at 302,686 to 303,318
_0284
Psyr_0285: Psyr_0285 - Cytochrome c oxidase assembly protein CtaG/Cox11, at 303,388 to 303,879
_0285
Psyr_0286: Psyr_0286 - conserved hypothetical protein, at 304,127 to 304,777
_0286
Position (kb) 303
304 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 302.411 kb on + strand at 302.411 kb on + strand at 302.412 kb on - strand at 302.412 kb on - strand at 302.412 kb on - strand at 302.412 kb on - strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.612 kb on - strand at 302.612 kb on - strand at 302.681 kb on - strand at 302.681 kb on - strand at 302.681 kb on - strand at 302.681 kb on - strand at 302.752 kb on - strand, within Psyr_0284 at 302.813 kb on + strand, within Psyr_0284 at 302.813 kb on + strand, within Psyr_0284 at 302.814 kb on - strand, within Psyr_0284 at 302.814 kb on - strand, within Psyr_0284 at 302.814 kb on - strand, within Psyr_0284 at 302.814 kb on - strand, within Psyr_0284 at 302.814 kb on - strand, within Psyr_0284 at 302.814 kb on - strand, within Psyr_0284 at 302.906 kb on + strand, within Psyr_0284 at 302.906 kb on + strand, within Psyr_0284 at 302.906 kb on + strand, within Psyr_0284 at 302.907 kb on - strand, within Psyr_0284 at 302.907 kb on - strand, within Psyr_0284 at 302.922 kb on - strand, within Psyr_0284 at 302.922 kb on - strand, within Psyr_0284 at 302.931 kb on - strand, within Psyr_0284 at 302.983 kb on + strand, within Psyr_0284 at 303.333 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.367 kb on + strand at 303.367 kb on + strand at 303.367 kb on + strand at 303.367 kb on + strand at 303.368 kb on - strand at 303.368 kb on - strand at 303.368 kb on - strand at 303.383 kb on + strand at 303.384 kb on - strand at 303.384 kb on - strand at 303.389 kb on + strand at 303.414 kb on + strand at 303.414 kb on + strand at 303.414 kb on + strand at 303.415 kb on - strand at 303.415 kb on - strand at 303.415 kb on - strand at 303.416 kb on + strand at 303.416 kb on + strand at 303.416 kb on + strand at 303.416 kb on + strand at 303.416 kb on + strand at 303.417 kb on - strand at 303.417 kb on - strand at 303.436 kb on + strand at 303.436 kb on + strand at 303.436 kb on + strand at 303.436 kb on + strand at 303.437 kb on - strand at 303.437 kb on - strand at 303.437 kb on - strand at 303.571 kb on - strand, within Psyr_0285 at 303.785 kb on + strand, within Psyr_0285 at 303.786 kb on - strand, within Psyr_0285 at 303.811 kb on + strand, within Psyr_0285 at 303.811 kb on + strand, within Psyr_0285 at 303.811 kb on + strand, within Psyr_0285 at 303.812 kb on - strand, within Psyr_0285 at 303.812 kb on - strand, within Psyr_0285 at 303.826 kb on + strand, within Psyr_0285 at 303.826 kb on + strand, within Psyr_0285 at 303.826 kb on + strand, within Psyr_0285 at 303.826 kb on + strand, within Psyr_0285 at 303.827 kb on - strand, within Psyr_0285 at 303.827 kb on - strand, within Psyr_0285 at 303.827 kb on - strand, within Psyr_0285 at 303.829 kb on + strand, within Psyr_0285 at 303.829 kb on + strand, within Psyr_0285 at 303.829 kb on + strand, within Psyr_0285 at 303.829 kb on + strand, within Psyr_0285 at 303.830 kb on - strand at 303.830 kb on - strand at 303.830 kb on - strand at 303.830 kb on - strand at 303.830 kb on - strand at 303.897 kb on - strand at 303.897 kb on - strand at 303.948 kb on + strand at 303.949 kb on - strand at 304.001 kb on + strand at 304.011 kb on - strand at 304.030 kb on - strand at 304.032 kb on - strand at 304.032 kb on - strand at 304.053 kb on + strand at 304.057 kb on + strand at 304.058 kb on - strand at 304.066 kb on + strand at 304.067 kb on - strand at 304.067 kb on - strand at 304.071 kb on + strand at 304.071 kb on + strand at 304.071 kb on + strand at 304.072 kb on - strand at 304.155 kb on + strand at 304.155 kb on + strand at 304.155 kb on + strand at 304.155 kb on + strand at 304.155 kb on + strand at 304.156 kb on - strand at 304.156 kb on - strand at 304.156 kb on - strand at 304.156 kb on - strand at 304.156 kb on - strand at 304.156 kb on - strand at 304.161 kb on + strand at 304.161 kb on + strand at 304.161 kb on + strand at 304.161 kb on + strand at 304.161 kb on + strand at 304.161 kb on + strand at 304.161 kb on + strand at 304.162 kb on - strand at 304.162 kb on - strand at 304.162 kb on - strand at 304.162 kb on - strand at 304.162 kb on - strand at 304.292 kb on + strand, within Psyr_0286 at 304.292 kb on + strand, within Psyr_0286 at 304.293 kb on - strand, within Psyr_0286 at 304.293 kb on - strand, within Psyr_0286 at 304.365 kb on + strand, within Psyr_0286 at 304.366 kb on - strand, within Psyr_0286 at 304.460 kb on + strand, within Psyr_0286 at 304.460 kb on + strand, within Psyr_0286 at 304.461 kb on - strand, within Psyr_0286 at 304.461 kb on - strand, within Psyr_0286 at 304.499 kb on + strand, within Psyr_0286 at 304.499 kb on + strand, within Psyr_0286 at 304.499 kb on + strand, within Psyr_0286 at 304.499 kb on + strand, within Psyr_0286 at 304.499 kb on + strand, within Psyr_0286 at 304.499 kb on + strand, within Psyr_0286 at 304.500 kb on - strand, within Psyr_0286 at 304.500 kb on - strand, within Psyr_0286 at 304.500 kb on - strand, within Psyr_0286 at 304.538 kb on - strand, within Psyr_0286 at 304.538 kb on - strand, within Psyr_0286
Per-strain Table
Position Strand Gene LocusTag Fraction Green bean; epiphytic remove 302,411 + -0.9 302,411 + -0.5 302,412 - +0.4 302,412 - -0.0 302,412 - -0.6 302,412 - -1.7 302,546 + +0.4 302,546 + +0.5 302,546 + -0.7 302,546 + +0.3 302,546 + -0.9 302,546 + +1.3 302,546 + +0.2 302,546 + +0.8 302,546 + +0.7 302,546 + +0.4 302,546 + -1.1 302,546 + -0.7 302,546 + -1.3 302,546 + -0.7 302,546 + +0.8 302,546 + +0.9 302,546 + -0.9 302,546 + -0.7 302,546 + -0.6 302,546 + +1.8 302,547 - -1.3 302,547 - +1.3 302,547 - -0.4 302,547 - -0.0 302,547 - +0.0 302,547 - -0.0 302,547 - -0.3 302,547 - -1.1 302,547 - +0.1 302,547 - +1.3 302,547 - -0.4 302,550 + -1.3 302,550 + -0.2 302,550 + +2.8 302,550 + -0.5 302,550 + -0.3 302,550 + -1.9 302,550 + -1.1 302,550 + -1.1 302,550 + -0.5 302,550 + -0.7 302,550 + -0.1 302,550 + +0.3 302,550 + +0.6 302,551 - -0.6 302,551 - -0.3 302,551 - -0.5 302,551 - +0.3 302,551 - -1.5 302,551 - +0.6 302,551 - +1.3 302,551 - -0.3 302,551 - -2.1 302,551 - +0.7 302,551 - +0.3 302,552 + +0.5 302,552 + +0.7 302,552 + -0.5 302,552 + +0.0 302,552 + +2.8 302,552 + -0.0 302,552 + +0.6 302,552 + -0.1 302,552 + +0.4 302,552 + -0.8 302,552 + -0.5 302,552 + +0.1 302,552 + -0.0 302,552 + +1.3 302,552 + +0.5 302,552 + +0.1 302,552 + -0.6 302,552 + -0.4 302,552 + +0.3 302,552 + +0.6 302,552 + +0.4 302,552 + -0.8 302,552 + +1.0 302,552 + +0.4 302,552 + +1.2 302,552 + +0.3 302,552 + +1.1 302,552 + -0.3 302,552 + +1.3 302,552 + +1.0 302,552 + -0.4 302,552 + +3.3 302,552 + -1.1 302,552 + -0.7 302,552 + +2.0 302,552 + +0.8 302,552 + -0.4 302,552 + -1.3 302,552 + -0.2 302,552 + +2.4 302,552 + +0.2 302,552 + +0.1 302,552 + +1.0 302,552 + -1.3 302,552 + +2.1 302,552 + +1.0 302,552 + -0.6 302,552 + +2.4 302,552 + +3.3 302,552 + -0.3 302,552 + +0.7 302,553 - +0.1 302,553 - +0.9 302,553 - -0.6 302,553 - -1.3 302,553 - +0.1 302,553 - -0.2 302,553 - -0.4 302,553 - -0.9 302,553 - -1.3 302,553 - +0.4 302,553 - -0.2 302,553 - -0.2 302,553 - +0.2 302,553 - +0.5 302,553 - +1.6 302,553 - +1.3 302,553 - -1.2 302,553 - +0.6 302,553 - +0.0 302,553 - +0.6 302,553 - -0.9 302,553 - -1.5 302,553 - -0.2 302,553 - +0.4 302,553 - +0.3 302,553 - -0.9 302,553 - -0.7 302,553 - -0.6 302,553 - -0.8 302,553 - -0.2 302,553 - +1.0 302,553 - -1.4 302,553 - -0.6 302,553 - -0.1 302,553 - +0.5 302,553 - +0.5 302,553 - +0.2 302,553 - -0.6 302,553 - -2.9 302,553 - -1.1 302,553 - -2.0 302,553 - -0.3 302,553 - -0.8 302,553 - +0.7 302,553 - -0.0 302,553 - +0.5 302,553 - +0.8 302,612 - +0.1 302,612 - -1.4 302,681 - +0.4 302,681 - +0.4 302,681 - +0.0 302,681 - +1.3 302,752 - Psyr_0284 0.10 -0.9 302,813 + Psyr_0284 0.20 +1.1 302,813 + Psyr_0284 0.20 -0.9 302,814 - Psyr_0284 0.20 +0.1 302,814 - Psyr_0284 0.20 -1.3 302,814 - Psyr_0284 0.20 -0.1 302,814 - Psyr_0284 0.20 +1.3 302,814 - Psyr_0284 0.20 -1.4 302,814 - Psyr_0284 0.20 +0.7 302,906 + Psyr_0284 0.35 +0.6 302,906 + Psyr_0284 0.35 +0.9 302,906 + Psyr_0284 0.35 -0.3 302,907 - Psyr_0284 0.35 -0.8 302,907 - Psyr_0284 0.35 -0.2 302,922 - Psyr_0284 0.37 +1.7 302,922 - Psyr_0284 0.37 -0.3 302,931 - Psyr_0284 0.39 +0.7 302,983 + Psyr_0284 0.47 +0.1 303,333 + -0.4 303,365 + +0.2 303,365 + +0.9 303,365 + +0.7 303,365 + +0.1 303,365 + +0.2 303,365 + +0.4 303,365 + +1.3 303,365 + +1.3 303,365 + -0.7 303,365 + +0.7 303,365 + -0.1 303,365 + +1.8 303,365 + +0.3 303,365 + -0.7 303,365 + -0.6 303,366 - -0.5 303,366 - -0.3 303,366 - +0.8 303,366 - -0.6 303,366 - +1.3 303,366 - -1.1 303,366 - -0.0 303,366 - +0.8 303,366 - +0.9 303,367 + -1.2 303,367 + +0.0 303,367 + +0.0 303,367 + +1.3 303,368 - -1.5 303,368 - -0.3 303,368 - +0.3 303,383 + -0.2 303,384 - +0.9 303,384 - +0.4 303,389 + +1.3 303,414 + -0.7 303,414 + -1.4 303,414 + +0.8 303,415 - +0.0 303,415 - +0.1 303,415 - +1.3 303,416 + -1.0 303,416 + +0.3 303,416 + +0.7 303,416 + +3.3 303,416 + -1.1 303,417 - -0.6 303,417 - -0.1 303,436 + -1.2 303,436 + +0.7 303,436 + -0.9 303,436 + +0.3 303,437 - -0.4 303,437 - +0.1 303,437 - -0.2 303,571 - Psyr_0285 0.37 +0.8 303,785 + Psyr_0285 0.81 +1.5 303,786 - Psyr_0285 0.81 +0.7 303,811 + Psyr_0285 0.86 +0.1 303,811 + Psyr_0285 0.86 +0.3 303,811 + Psyr_0285 0.86 +0.6 303,812 - Psyr_0285 0.86 -0.1 303,812 - Psyr_0285 0.86 +0.3 303,826 + Psyr_0285 0.89 +1.8 303,826 + Psyr_0285 0.89 +0.4 303,826 + Psyr_0285 0.89 -0.6 303,826 + Psyr_0285 0.89 +1.3 303,827 - Psyr_0285 0.89 -0.6 303,827 - Psyr_0285 0.89 -1.3 303,827 - Psyr_0285 0.89 -0.5 303,829 + Psyr_0285 0.90 +0.7 303,829 + Psyr_0285 0.90 +1.6 303,829 + Psyr_0285 0.90 +1.0 303,829 + Psyr_0285 0.90 -0.9 303,830 - -0.1 303,830 - -1.5 303,830 - -0.5 303,830 - +0.6 303,830 - +0.8 303,897 - -0.3 303,897 - -0.5 303,948 + -1.3 303,949 - -2.5 304,001 + -2.1 304,011 - -1.1 304,030 - +0.3 304,032 - -0.3 304,032 - +1.3 304,053 + +0.0 304,057 + +1.3 304,058 - -0.3 304,066 + -1.4 304,067 - +0.3 304,067 - +0.6 304,071 + +0.8 304,071 + -0.3 304,071 + +0.3 304,072 - +0.4 304,155 + +0.1 304,155 + +0.5 304,155 + +0.3 304,155 + -1.5 304,155 + +0.3 304,156 - +0.6 304,156 - -1.1 304,156 - -1.4 304,156 - +0.0 304,156 - +1.6 304,156 - -1.9 304,161 + +0.7 304,161 + -1.3 304,161 + +0.9 304,161 + -0.2 304,161 + +0.0 304,161 + -0.8 304,161 + +0.6 304,162 - -2.3 304,162 - -0.7 304,162 - -1.6 304,162 - -0.4 304,162 - -0.1 304,292 + Psyr_0286 0.25 +1.3 304,292 + Psyr_0286 0.25 -0.8 304,293 - Psyr_0286 0.25 -0.2 304,293 - Psyr_0286 0.25 -0.6 304,365 + Psyr_0286 0.37 +1.0 304,366 - Psyr_0286 0.37 +1.5 304,460 + Psyr_0286 0.51 -2.5 304,460 + Psyr_0286 0.51 -1.2 304,461 - Psyr_0286 0.51 -2.7 304,461 - Psyr_0286 0.51 -2.1 304,499 + Psyr_0286 0.57 -0.4 304,499 + Psyr_0286 0.57 +0.9 304,499 + Psyr_0286 0.57 +0.3 304,499 + Psyr_0286 0.57 -0.3 304,499 + Psyr_0286 0.57 +0.1 304,499 + Psyr_0286 0.57 -0.5 304,500 - Psyr_0286 0.57 -0.7 304,500 - Psyr_0286 0.57 +0.8 304,500 - Psyr_0286 0.57 +0.8 304,538 - Psyr_0286 0.63 -0.3 304,538 - Psyr_0286 0.63 +0.3
Or see this region's nucleotide sequence