Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0113

Experiment: Green bean; epiphytic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Green bean; epiphytic
122,954	+		Psyr_0112	0.38	-0.1
122,954	+		Psyr_0112	0.38	-1.5
122,998	-		Psyr_0112	0.49	-1.5
122,998	-		Psyr_0112	0.49	-1.2
123,045	-		Psyr_0112	0.61	-1.0
123,045	-		Psyr_0112	0.61	+0.1
123,045	-		Psyr_0112	0.61	-0.6
123,045	-		Psyr_0112	0.61	+1.7
123,054	-		Psyr_0112	0.64	-0.8
123,068	+		Psyr_0112	0.67	+1.2
123,068	+		Psyr_0112	0.67	+0.5
123,068	+		Psyr_0112	0.67	-0.3
123,068	+		Psyr_0112	0.67	-2.0
123,069	-		Psyr_0112	0.67	+0.6
123,149	-		Psyr_0112	0.88	+1.6
123,149	-		Psyr_0112	0.88	-0.7
123,193	+				-0.3
123,193	+				+1.1
123,193	+				-1.4
123,193	+				+0.3
123,193	+				-0.5
123,193	+				-0.9
123,193	+				-1.0
123,193	+				+0.2
123,194	-				+0.5
123,194	-				-0.8
123,194	-				-0.3
123,201	+				-0.4
123,201	+				+0.9
123,201	+				+0.4
123,202	-				-1.4
123,202	-				+0.2
123,202	-				-0.1
123,220	+				+0.1
123,220	+				-0.9
123,220	+				+1.2
123,220	+				+0.3
123,221	-				-0.5
123,221	-				-0.7
123,221	-				-0.7
123,221	-				-0.2
123,233	+				-0.6
123,233	+				-0.1
123,234	-				+0.7
123,234	-				+2.3
123,234	-				+1.1
123,234	-				+0.2
123,254	+				+2.1
123,254	+				-0.1
123,255	-				-0.2
123,255	-				-0.4
123,255	-				-1.5
123,255	-				+2.2
123,255	-				-1.9
123,283	-				+0.5
123,283	-				+0.4
123,343	+				-0.3
123,343	+				+2.0
123,343	+				-0.3
123,344	-				-1.4
123,344	-				-0.2
123,344	-				+0.8
123,344	-				+1.0
123,375	+				-0.5
123,396	-				+1.3
123,415	-				-0.8
123,415	-				+3.0
123,513	+				-0.7
123,536	-				-1.1
123,617	-				+0.1
123,650	+				+0.0
123,650	+				+0.5
123,650	+				-0.2
123,650	+				-0.9
123,651	-				-1.3
123,651	-				-0.3
123,730	+				+1.0
123,731	-				+1.0
123,898	+				+0.5
123,899	-				-0.9
123,899	-				-1.0
123,932	-				-0.1
123,956	+				-0.4
123,956	+				+1.3
123,957	-				-1.0
123,957	-				-0.0
123,957	-				-0.6
123,957	-				+1.6
123,957	-				+1.9
123,972	+				-0.0
123,972	+				-1.0
123,973	-				-0.7
123,998	-				+1.4
124,047	-		Psyr_0113	0.16	-0.0
124,242	+		Psyr_0113	0.42	+0.1
124,243	-		Psyr_0113	0.43	+1.3
124,265	-		Psyr_0113	0.46	-1.5
124,424	+		Psyr_0113	0.67	+0.3
124,425	-		Psyr_0113	0.67	-0.3
124,425	-		Psyr_0113	0.67	+0.8
124,425	-		Psyr_0113	0.67	-1.2
124,425	-		Psyr_0113	0.67	-0.7
124,425	-		Psyr_0113	0.67	-0.6
124,425	-		Psyr_0113	0.67	-0.4
124,459	+		Psyr_0113	0.72	-0.5
124,519	+		Psyr_0113	0.80	+0.3
124,520	-		Psyr_0113	0.80	-0.8
124,542	+		Psyr_0113	0.83	-0.5
124,542	+		Psyr_0113	0.83	+0.3
124,543	-		Psyr_0113	0.83	-0.5
124,543	-		Psyr_0113	0.83	-1.7
124,557	+		Psyr_0113	0.85	-0.3
124,557	+		Psyr_0113	0.85	+0.5
124,557	+		Psyr_0113	0.85	-0.8
124,599	-				+0.1
124,612	+				+0.9
124,612	+				+0.6
124,612	+				+0.9
124,612	+				-0.5
124,612	+				-0.3
124,613	-				+2.1
124,613	-				+0.9
124,613	-				-0.0
124,629	+				-0.3
124,759	-				+1.3
124,765	-				+0.1
124,765	-				+0.7
124,765	-				+0.1
124,765	-				+2.3
124,765	-				+1.0
124,795	-				-0.1
124,798	+				-0.2
124,798	+				+1.2
124,799	-				-0.9
124,799	-				-1.0
124,834	+				+0.9
124,839	+				-0.0
124,862	-				+0.3
124,864	+				-0.3
124,872	+				+0.9
124,872	+				-1.3
124,872	+				-0.3
124,872	+				+1.1
124,874	+				+0.8
124,874	+				+0.7
124,874	+				+0.5
124,874	+				+0.1
124,874	+				+1.9
124,875	-				+5.0
124,875	-				-0.2
124,875	-				+2.2
124,875	-				-0.2
124,875	-				+0.1
124,875	-				+0.1
124,875	-				+1.2
124,875	-				+0.1
124,875	-				+0.1
124,875	-				-0.7
124,875	-				-1.5
124,875	-				+0.3
124,875	-				+1.1
124,875	-				+0.5
124,897	+				-0.8
124,898	-				-0.0
124,917	+				+1.9
124,917	+				-1.0
124,917	+				+0.8
124,918	-				+0.1
124,918	-				+1.3
124,918	-				+0.3
124,918	-				+0.3
124,969	+				+0.4
124,970	-				+1.3
124,970	-				-0.2
125,044	+				+0.7
125,068	+		Psyr_0114	0.14	-0.6
125,069	-		Psyr_0114	0.15	+0.8
125,131	+		Psyr_0114	0.28	-0.2
125,131	+		Psyr_0114	0.28	+2.0
125,132	-		Psyr_0114	0.28	-0.0
125,132	-		Psyr_0114	0.28	-0.1
125,154	+		Psyr_0114	0.33	-0.0
125,154	+		Psyr_0114	0.33	+0.3
125,154	+		Psyr_0114	0.33	+0.1
125,154	+		Psyr_0114	0.33	-0.7
125,154	+		Psyr_0114	0.33	+1.4
125,154	+		Psyr_0114	0.33	-0.5
125,154	+		Psyr_0114	0.33	+0.3
125,154	+		Psyr_0114	0.33	-1.0
125,154	+		Psyr_0114	0.33	-0.7
125,154	+		Psyr_0114	0.33	-0.4
125,155	-		Psyr_0114	0.34	-0.4
125,155	-		Psyr_0114	0.34	-1.4
125,155	-		Psyr_0114	0.34	+1.1
125,155	-		Psyr_0114	0.34	-0.0
125,155	-		Psyr_0114	0.34	-1.8
125,155	-		Psyr_0114	0.34	+1.3
125,155	-		Psyr_0114	0.34	+0.6
125,155	-		Psyr_0114	0.34	+2.3
125,155	-		Psyr_0114	0.34	-0.1
125,155	-		Psyr_0114	0.34	+1.4
125,155	-		Psyr_0114	0.34	+0.5
125,155	-		Psyr_0114	0.34	+1.0
125,208	-		Psyr_0114	0.45	+0.3
125,223	-		Psyr_0114	0.49	-0.9
125,223	-		Psyr_0114	0.49	-0.3
125,262	+		Psyr_0114	0.57	+0.8
125,262	+		Psyr_0114	0.57	+0.3
125,263	-		Psyr_0114	0.57	+1.2
125,263	-		Psyr_0114	0.57	-0.8
125,453	+				+0.1
125,453	+				+0.5
125,453	+				+2.3
125,453	+				+0.9
125,453	+				-1.6
125,454	-				+1.1
125,454	-				-1.6
125,522	+				-0.8
125,523	-				-1.7
125,561	+				-1.7
125,561	+				-2.1
125,561	+				+0.7
125,610	+				+0.3
125,610	+				-0.3
125,610	+				-0.6
125,610	+				+0.1
125,610	+				-0.4
125,610	+				-0.6
125,610	+				-0.0
125,611	-				+0.1
125,611	-				-0.1
125,611	-				-0.1
125,611	-				+0.7
125,611	-				-0.5
125,611	-				+0.4
125,620	+				+0.6
125,621	-				+0.3
125,649	-				+0.8
125,649	-				+1.0