Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06197

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06196 and H281DRAFT_06197 are separated by 64 nucleotidesH281DRAFT_06197 and H281DRAFT_06198 are separated by 241 nucleotides H281DRAFT_06196: H281DRAFT_06196 - ATP-dependent DNA ligase LigD phosphoesterase module/ATP-dependent DNA ligase LigD polymerase module, at 83,924 to 85,891 _06196 H281DRAFT_06197: H281DRAFT_06197 - hypothetical protein, at 85,956 to 86,174 _06197 H281DRAFT_06198: H281DRAFT_06198 - hypothetical protein, at 86,416 to 86,931 _06198 Position (kb) 85 86 87Strain fitness (log2 ratio) -2 -1 0 1at 85.085 kb on + strand, within H281DRAFT_06196at 85.085 kb on + strand, within H281DRAFT_06196at 85.085 kb on + strand, within H281DRAFT_06196at 85.085 kb on + strand, within H281DRAFT_06196at 85.086 kb on - strand, within H281DRAFT_06196at 85.088 kb on + strand, within H281DRAFT_06196at 85.088 kb on + strand, within H281DRAFT_06196at 85.089 kb on - strand, within H281DRAFT_06196at 85.126 kb on + strand, within H281DRAFT_06196at 85.126 kb on + strand, within H281DRAFT_06196at 85.127 kb on - strand, within H281DRAFT_06196at 85.127 kb on - strand, within H281DRAFT_06196at 85.239 kb on + strand, within H281DRAFT_06196at 85.239 kb on + strand, within H281DRAFT_06196at 85.261 kb on - strand, within H281DRAFT_06196at 85.273 kb on + strand, within H281DRAFT_06196at 85.574 kb on - strand, within H281DRAFT_06196at 85.574 kb on - strand, within H281DRAFT_06196at 85.650 kb on - strand, within H281DRAFT_06196at 85.657 kb on + strand, within H281DRAFT_06196at 85.783 kb on + strandat 85.832 kb on + strandat 85.887 kb on + strandat 85.887 kb on + strandat 85.887 kb on + strandat 85.888 kb on - strandat 86.152 kb on + strand, within H281DRAFT_06197at 86.152 kb on + strand, within H281DRAFT_06197at 86.163 kb on - strandat 86.168 kb on - strandat 86.214 kb on + strandat 86.215 kb on - strandat 86.215 kb on - strandat 86.305 kb on + strandat 86.305 kb on + strandat 86.305 kb on + strandat 86.305 kb on + strandat 86.305 kb on + strandat 86.306 kb on - strandat 86.306 kb on - strandat 86.306 kb on - strandat 86.306 kb on - strandat 86.306 kb on - strandat 86.306 kb on - strandat 86.306 kb on - strandat 86.306 kb on - strandat 86.306 kb on - strandat 86.306 kb on - strandat 86.306 kb on - strandat 86.330 kb on + strandat 86.331 kb on - strandat 86.358 kb on + strandat 86.362 kb on + strandat 86.362 kb on + strandat 86.362 kb on + strandat 86.363 kb on - strandat 86.363 kb on - strandat 86.363 kb on - strandat 86.366 kb on - strandat 86.499 kb on + strand, within H281DRAFT_06198at 86.500 kb on - strand, within H281DRAFT_06198at 86.610 kb on + strand, within H281DRAFT_06198at 86.611 kb on - strand, within H281DRAFT_06198at 86.613 kb on + strand, within H281DRAFT_06198at 86.613 kb on + strand, within H281DRAFT_06198at 86.613 kb on + strand, within H281DRAFT_06198at 86.614 kb on - strand, within H281DRAFT_06198at 86.614 kb on - strand, within H281DRAFT_06198at 86.670 kb on - strand, within H281DRAFT_06198at 86.803 kb on + strand, within H281DRAFT_06198at 86.948 kb on - strandat 86.968 kb on + strandat 86.968 kb on + strandat 86.968 kb on + strandat 86.969 kb on - strandat 86.973 kb on + strandat 86.973 kb on + strandat 86.973 kb on + strandat 86.974 kb on - strandat 86.980 kb on - strandat 86.980 kb on - strandat 86.980 kb on - strandat 86.984 kb on + strandat 86.994 kb on - strandat 86.994 kb on - strandat 87.018 kb on - strandat 87.110 kb on + strandat 87.111 kb on - strandat 87.123 kb on - strandat 87.124 kb on + strandat 87.124 kb on + strandat 87.124 kb on + strandat 87.124 kb on + strandat 87.124 kb on + strandat 87.124 kb on + strandat 87.124 kb on + strandat 87.124 kb on + strandat 87.125 kb on - strandat 87.125 kb on - strandat 87.125 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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85,085 + H281DRAFT_06196 0.59 +0.1
85,085 + H281DRAFT_06196 0.59 -0.9
85,085 + H281DRAFT_06196 0.59 -0.2
85,085 + H281DRAFT_06196 0.59 -0.2
85,086 - H281DRAFT_06196 0.59 -0.5
85,088 + H281DRAFT_06196 0.59 +0.3
85,088 + H281DRAFT_06196 0.59 -1.2
85,089 - H281DRAFT_06196 0.59 -0.3
85,126 + H281DRAFT_06196 0.61 +0.0
85,126 + H281DRAFT_06196 0.61 +0.9
85,127 - H281DRAFT_06196 0.61 +0.4
85,127 - H281DRAFT_06196 0.61 -0.2
85,239 + H281DRAFT_06196 0.67 -1.0
85,239 + H281DRAFT_06196 0.67 -0.2
85,261 - H281DRAFT_06196 0.68 -1.1
85,273 + H281DRAFT_06196 0.69 +0.7
85,574 - H281DRAFT_06196 0.84 -0.2
85,574 - H281DRAFT_06196 0.84 +0.1
85,650 - H281DRAFT_06196 0.88 -0.3
85,657 + H281DRAFT_06196 0.88 -1.4
85,783 + +0.4
85,832 + -0.9
85,887 + -0.1
85,887 + +0.7
85,887 + -0.1
85,888 - +0.4
86,152 + H281DRAFT_06197 0.89 +0.8
86,152 + H281DRAFT_06197 0.89 +0.6
86,163 - -0.4
86,168 - +0.2
86,214 + -0.2
86,215 - +0.0
86,215 - +1.7
86,305 + -0.8
86,305 + +0.1
86,305 + -0.6
86,305 + +0.5
86,305 + +0.3
86,306 - -0.1
86,306 - -0.7
86,306 - -0.7
86,306 - +1.0
86,306 - -0.1
86,306 - -0.1
86,306 - -1.2
86,306 - +1.0
86,306 - +0.8
86,306 - -0.2
86,306 - -0.7
86,330 + +1.5
86,331 - +0.1
86,358 + +0.0
86,362 + +0.1
86,362 + +0.2
86,362 + +0.5
86,363 - -0.2
86,363 - +0.1
86,363 - -0.0
86,366 - -1.0
86,499 + H281DRAFT_06198 0.16 -0.3
86,500 - H281DRAFT_06198 0.16 +0.6
86,610 + H281DRAFT_06198 0.38 +0.1
86,611 - H281DRAFT_06198 0.38 -0.4
86,613 + H281DRAFT_06198 0.38 +0.0
86,613 + H281DRAFT_06198 0.38 -0.4
86,613 + H281DRAFT_06198 0.38 +0.1
86,614 - H281DRAFT_06198 0.38 +0.1
86,614 - H281DRAFT_06198 0.38 -0.1
86,670 - H281DRAFT_06198 0.49 -0.0
86,803 + H281DRAFT_06198 0.75 +1.0
86,948 - -0.2
86,968 + +0.4
86,968 + +0.3
86,968 + +0.4
86,969 - -0.2
86,973 + +0.1
86,973 + -0.8
86,973 + +0.6
86,974 - +0.6
86,980 - +0.1
86,980 - +0.7
86,980 - -0.1
86,984 + -0.0
86,994 - +0.3
86,994 - -1.2
87,018 - +0.4
87,110 + -0.1
87,111 - +0.7
87,123 - -1.2
87,124 + -0.6
87,124 + -0.5
87,124 + -0.1
87,124 + -2.6
87,124 + +0.2
87,124 + -1.1
87,124 + -0.1
87,124 + +0.4
87,125 - -0.4
87,125 - -1.2
87,125 - -0.1

Or see this region's nucleotide sequence