Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05316

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05315 and H281DRAFT_05316 are separated by 222 nucleotidesH281DRAFT_05316 and H281DRAFT_05317 are separated by 129 nucleotides H281DRAFT_05315: H281DRAFT_05315 - 5-dehydro-4-deoxy-D-glucarate aldolase (EC 4.1.2.20), at 64,699 to 65,505 _05315 H281DRAFT_05316: H281DRAFT_05316 - NADP-dependent aldehyde dehydrogenase, at 65,728 to 67,335 _05316 H281DRAFT_05317: H281DRAFT_05317 - transcriptional regulator, GntR family, at 67,465 to 68,208 _05317 Position (kb) 65 66 67 68Strain fitness (log2 ratio) -2 -1 0 1at 65.076 kb on - strand, within H281DRAFT_05315at 65.239 kb on - strand, within H281DRAFT_05315at 65.463 kb on + strandat 65.464 kb on - strandat 65.480 kb on + strandat 65.538 kb on + strandat 65.539 kb on - strandat 65.615 kb on - strandat 67.238 kb on - strandat 67.427 kb on + strandat 67.427 kb on + strandat 67.428 kb on - strandat 67.470 kb on + strandat 67.470 kb on + strandat 67.471 kb on - strandat 68.163 kb on + strandat 68.231 kb on + strandat 68.259 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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65,076 - H281DRAFT_05315 0.47 -0.2
65,239 - H281DRAFT_05315 0.67 -0.9
65,463 + +0.2
65,464 - +0.2
65,480 + -1.0
65,538 + -0.6
65,539 - -0.8
65,615 - +1.0
67,238 - -0.6
67,427 + +1.4
67,427 + +0.3
67,428 - +0.4
67,470 + -0.9
67,470 + +0.4
67,471 - -0.3
68,163 + -1.3
68,231 + -2.4
68,259 - +0.4

Or see this region's nucleotide sequence