Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04775

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04774 and H281DRAFT_04775 are separated by 49 nucleotidesH281DRAFT_04775 and H281DRAFT_04776 are separated by 98 nucleotides H281DRAFT_04774: H281DRAFT_04774 - polysaccharide export outer membrane protein, at 194,004 to 195,143 _04774 H281DRAFT_04775: H281DRAFT_04775 - tyrosine-protein kinase Etk/Wzc, at 195,193 to 197,427 _04775 H281DRAFT_04776: H281DRAFT_04776 - GDPmannose 4,6-dehydratase, at 197,526 to 198,644 _04776 Position (kb) 195 196 197 198Strain fitness (log2 ratio) -1 0 1 2at 194.422 kb on - strand, within H281DRAFT_04774at 194.481 kb on - strand, within H281DRAFT_04774at 194.557 kb on + strand, within H281DRAFT_04774at 194.751 kb on + strand, within H281DRAFT_04774at 194.752 kb on - strand, within H281DRAFT_04774at 194.805 kb on + strand, within H281DRAFT_04774at 194.806 kb on - strand, within H281DRAFT_04774at 194.806 kb on - strand, within H281DRAFT_04774at 195.075 kb on - strandat 195.151 kb on - strandat 195.158 kb on - strandat 195.556 kb on + strand, within H281DRAFT_04775at 195.557 kb on - strand, within H281DRAFT_04775at 196.142 kb on - strand, within H281DRAFT_04775at 196.358 kb on + strand, within H281DRAFT_04775at 196.777 kb on - strand, within H281DRAFT_04775at 197.019 kb on - strand, within H281DRAFT_04775at 197.313 kb on + strandat 197.340 kb on - strandat 197.938 kb on - strand, within H281DRAFT_04776at 198.061 kb on - strand, within H281DRAFT_04776at 198.177 kb on + strand, within H281DRAFT_04776

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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194,422 - H281DRAFT_04774 0.37 +1.2
194,481 - H281DRAFT_04774 0.42 +0.4
194,557 + H281DRAFT_04774 0.49 +0.3
194,751 + H281DRAFT_04774 0.66 +0.2
194,752 - H281DRAFT_04774 0.66 +1.2
194,805 + H281DRAFT_04774 0.70 +0.4
194,806 - H281DRAFT_04774 0.70 -0.1
194,806 - H281DRAFT_04774 0.70 -0.9
195,075 - +0.4
195,151 - +0.0
195,158 - +0.2
195,556 + H281DRAFT_04775 0.16 +0.8
195,557 - H281DRAFT_04775 0.16 +2.4
196,142 - H281DRAFT_04775 0.42 -0.2
196,358 + H281DRAFT_04775 0.52 +0.8
196,777 - H281DRAFT_04775 0.71 +0.8
197,019 - H281DRAFT_04775 0.82 +0.3
197,313 + +0.1
197,340 - -0.1
197,938 - H281DRAFT_04776 0.37 +0.4
198,061 - H281DRAFT_04776 0.48 +0.4
198,177 + H281DRAFT_04776 0.58 +0.7

Or see this region's nucleotide sequence