Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04492

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04491 and H281DRAFT_04492 are separated by 187 nucleotidesH281DRAFT_04492 and H281DRAFT_04493 are separated by 234 nucleotidesH281DRAFT_04493 and H281DRAFT_04494 are separated by 122 nucleotides H281DRAFT_04491: H281DRAFT_04491 - electron-transferring-flavoprotein dehydrogenase, at 223,695 to 225,368 _04491 H281DRAFT_04492: H281DRAFT_04492 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 225,556 to 226,332 _04492 H281DRAFT_04493: H281DRAFT_04493 - (3S)-malyl-CoA thioesterase, at 226,567 to 227,010 _04493 H281DRAFT_04494: H281DRAFT_04494 - transcriptional regulator, LuxR family, at 227,133 to 227,678 _04494 Position (kb) 225 226 227Strain fitness (log2 ratio) -2 -1 0 1at 225.476 kb on - strandat 225.481 kb on - strandat 225.525 kb on - strandat 225.530 kb on + strandat 225.531 kb on - strandat 225.531 kb on - strandat 225.531 kb on - strandat 225.535 kb on - strandat 225.889 kb on + strand, within H281DRAFT_04492at 225.889 kb on + strandat 225.890 kb on - strand, within H281DRAFT_04492at 225.890 kb on - strand, within H281DRAFT_04492at 226.000 kb on - strand, within H281DRAFT_04492at 226.026 kb on - strand, within H281DRAFT_04492at 226.141 kb on + strand, within H281DRAFT_04492at 226.141 kb on + strand, within H281DRAFT_04492at 226.141 kb on + strand, within H281DRAFT_04492at 226.141 kb on + strand, within H281DRAFT_04492at 226.142 kb on - strand, within H281DRAFT_04492at 226.142 kb on - strand, within H281DRAFT_04492at 226.144 kb on - strand, within H281DRAFT_04492at 226.257 kb on - strandat 226.479 kb on - strandat 226.548 kb on + strandat 226.549 kb on - strandat 226.549 kb on - strandat 226.654 kb on + strand, within H281DRAFT_04493at 226.655 kb on - strand, within H281DRAFT_04493at 226.663 kb on + strand, within H281DRAFT_04493at 226.680 kb on + strand, within H281DRAFT_04493at 226.680 kb on + strand, within H281DRAFT_04493at 226.680 kb on + strand, within H281DRAFT_04493at 226.681 kb on - strand, within H281DRAFT_04493at 226.882 kb on + strand, within H281DRAFT_04493at 226.883 kb on - strand, within H281DRAFT_04493at 226.883 kb on - strand, within H281DRAFT_04493at 226.908 kb on - strand, within H281DRAFT_04493at 226.908 kb on - strand, within H281DRAFT_04493at 227.009 kb on - strandat 227.022 kb on - strandat 227.059 kb on - strandat 227.178 kb on - strandat 227.183 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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225,476 - +0.3
225,481 - +0.7
225,525 - +0.4
225,530 + -0.3
225,531 - +0.2
225,531 - +0.8
225,531 - +1.0
225,535 - +0.7
225,889 + H281DRAFT_04492 0.43 +0.4
225,889 + +0.7
225,890 - H281DRAFT_04492 0.43 +1.0
225,890 - H281DRAFT_04492 0.43 +0.9
226,000 - H281DRAFT_04492 0.57 +0.4
226,026 - H281DRAFT_04492 0.60 +1.7
226,141 + H281DRAFT_04492 0.75 +0.7
226,141 + H281DRAFT_04492 0.75 +0.5
226,141 + H281DRAFT_04492 0.75 +0.1
226,141 + H281DRAFT_04492 0.75 +0.8
226,142 - H281DRAFT_04492 0.75 +0.4
226,142 - H281DRAFT_04492 0.75 +0.4
226,144 - H281DRAFT_04492 0.76 +1.0
226,257 - +0.3
226,479 - +0.7
226,548 + +0.5
226,549 - +0.4
226,549 - -0.1
226,654 + H281DRAFT_04493 0.20 +0.2
226,655 - H281DRAFT_04493 0.20 +0.2
226,663 + H281DRAFT_04493 0.22 +0.1
226,680 + H281DRAFT_04493 0.25 -0.0
226,680 + H281DRAFT_04493 0.25 +0.7
226,680 + H281DRAFT_04493 0.25 +0.3
226,681 - H281DRAFT_04493 0.26 +0.4
226,882 + H281DRAFT_04493 0.71 +0.7
226,883 - H281DRAFT_04493 0.71 +0.4
226,883 - H281DRAFT_04493 0.71 +0.2
226,908 - H281DRAFT_04493 0.77 +0.8
226,908 - H281DRAFT_04493 0.77 +1.1
227,009 - +0.4
227,022 - +0.7
227,059 - +1.0
227,178 - -2.0
227,183 - -1.2

Or see this region's nucleotide sequence