Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04226

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04225 and H281DRAFT_04226 are separated by 318 nucleotidesH281DRAFT_04226 and H281DRAFT_04227 are separated by 204 nucleotidesH281DRAFT_04227 and H281DRAFT_04228 are separated by 199 nucleotides H281DRAFT_04225: H281DRAFT_04225 - transcriptional regulator, DeoR family, at 345,032 to 345,811 _04225 H281DRAFT_04226: H281DRAFT_04226 - hypothetical protein, at 346,130 to 346,327 _04226 H281DRAFT_04227: H281DRAFT_04227 - hypothetical protein, at 346,532 to 346,906 _04227 H281DRAFT_04228: H281DRAFT_04228 - homodimeric glycerol 3-phosphate dehydrogenase (quinone), at 347,106 to 348,635 _04228 Position (kb) 346 347Strain fitness (log2 ratio) -2 -1 0 1 2at 345.248 kb on + strand, within H281DRAFT_04225at 345.248 kb on + strand, within H281DRAFT_04225at 345.249 kb on - strand, within H281DRAFT_04225at 345.301 kb on - strand, within H281DRAFT_04225at 345.406 kb on + strand, within H281DRAFT_04225at 345.406 kb on + strand, within H281DRAFT_04225at 345.797 kb on + strandat 345.797 kb on + strandat 345.798 kb on - strandat 345.798 kb on - strandat 345.957 kb on + strandat 345.957 kb on + strandat 345.957 kb on + strandat 346.006 kb on + strandat 346.011 kb on - strandat 346.278 kb on + strand, within H281DRAFT_04226at 346.396 kb on + strandat 346.396 kb on + strandat 346.397 kb on - strandat 346.397 kb on - strandat 346.397 kb on - strandat 346.497 kb on + strandat 346.497 kb on + strandat 346.498 kb on - strandat 346.574 kb on + strand, within H281DRAFT_04227at 346.574 kb on + strand, within H281DRAFT_04227at 346.574 kb on + strand, within H281DRAFT_04227at 346.575 kb on - strand, within H281DRAFT_04227at 346.575 kb on - strand, within H281DRAFT_04227at 346.575 kb on - strand, within H281DRAFT_04227at 346.636 kb on + strand, within H281DRAFT_04227at 346.637 kb on - strand, within H281DRAFT_04227at 346.656 kb on + strand, within H281DRAFT_04227at 346.657 kb on - strand, within H281DRAFT_04227at 346.657 kb on - strand, within H281DRAFT_04227at 346.689 kb on + strand, within H281DRAFT_04227at 346.689 kb on + strand, within H281DRAFT_04227at 346.690 kb on - strand, within H281DRAFT_04227at 346.728 kb on + strand, within H281DRAFT_04227at 346.728 kb on + strand, within H281DRAFT_04227at 346.728 kb on + strand, within H281DRAFT_04227at 346.729 kb on - strand, within H281DRAFT_04227at 346.729 kb on - strand, within H281DRAFT_04227at 346.729 kb on - strand, within H281DRAFT_04227at 346.729 kb on - strand, within H281DRAFT_04227at 346.729 kb on - strand, within H281DRAFT_04227at 346.749 kb on + strand, within H281DRAFT_04227at 346.750 kb on - strand, within H281DRAFT_04227at 346.750 kb on - strand, within H281DRAFT_04227at 346.773 kb on + strand, within H281DRAFT_04227at 346.898 kb on + strandat 346.898 kb on + strandat 346.899 kb on - strandat 346.939 kb on - strandat 346.939 kb on - strandat 346.963 kb on + strandat 347.023 kb on - strandat 347.023 kb on - strandat 347.062 kb on + strandat 347.234 kb on + strandat 347.235 kb on - strandat 347.235 kb on - strandat 347.286 kb on + strand, within H281DRAFT_04228

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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345,248 + H281DRAFT_04225 0.28 -0.6
345,248 + H281DRAFT_04225 0.28 -0.7
345,249 - H281DRAFT_04225 0.28 +0.8
345,301 - H281DRAFT_04225 0.34 -0.2
345,406 + H281DRAFT_04225 0.48 -0.5
345,406 + H281DRAFT_04225 0.48 -2.1
345,797 + -0.4
345,797 + -2.0
345,798 - -0.8
345,798 - -0.1
345,957 + -0.1
345,957 + +0.2
345,957 + +0.0
346,006 + +0.0
346,011 - -1.8
346,278 + H281DRAFT_04226 0.75 +0.8
346,396 + +0.3
346,396 + +0.2
346,397 - +0.2
346,397 - +0.1
346,397 - -0.1
346,497 + +0.6
346,497 + -0.3
346,498 - +0.1
346,574 + H281DRAFT_04227 0.11 -0.2
346,574 + H281DRAFT_04227 0.11 +1.6
346,574 + H281DRAFT_04227 0.11 +0.2
346,575 - H281DRAFT_04227 0.11 -0.1
346,575 - H281DRAFT_04227 0.11 +0.3
346,575 - H281DRAFT_04227 0.11 +1.0
346,636 + H281DRAFT_04227 0.28 -0.1
346,637 - H281DRAFT_04227 0.28 +0.2
346,656 + H281DRAFT_04227 0.33 -0.5
346,657 - H281DRAFT_04227 0.33 +0.5
346,657 - H281DRAFT_04227 0.33 +0.8
346,689 + H281DRAFT_04227 0.42 +0.3
346,689 + H281DRAFT_04227 0.42 -0.3
346,690 - H281DRAFT_04227 0.42 +1.3
346,728 + H281DRAFT_04227 0.52 -2.4
346,728 + H281DRAFT_04227 0.52 -0.6
346,728 + H281DRAFT_04227 0.52 -0.5
346,729 - H281DRAFT_04227 0.53 -0.6
346,729 - H281DRAFT_04227 0.53 -0.2
346,729 - H281DRAFT_04227 0.53 -0.3
346,729 - H281DRAFT_04227 0.53 -0.6
346,729 - H281DRAFT_04227 0.53 -0.1
346,749 + H281DRAFT_04227 0.58 -0.2
346,750 - H281DRAFT_04227 0.58 +0.2
346,750 - H281DRAFT_04227 0.58 +0.5
346,773 + H281DRAFT_04227 0.64 +1.8
346,898 + +0.1
346,898 + -0.2
346,899 - +0.3
346,939 - -1.2
346,939 - -0.5
346,963 + -0.9
347,023 - +0.6
347,023 - +0.9
347,062 + +0.8
347,234 + -0.2
347,235 - +0.5
347,235 - +0.3
347,286 + H281DRAFT_04228 0.12 +0.9

Or see this region's nucleotide sequence