Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03941

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03939 and H281DRAFT_03940 are separated by 134 nucleotidesH281DRAFT_03940 and H281DRAFT_03941 overlap by 4 nucleotidesH281DRAFT_03941 and H281DRAFT_03942 are separated by 15 nucleotides H281DRAFT_03939: H281DRAFT_03939 - ModE molybdate transport repressor domain-containing protein, at 38,612 to 39,691 _03939 H281DRAFT_03940: H281DRAFT_03940 - formate dehydrogenase gamma subunit, at 39,826 to 40,311 _03940 H281DRAFT_03941: H281DRAFT_03941 - formate dehydrogenase beta subunit, at 40,308 to 41,873 _03941 H281DRAFT_03942: H281DRAFT_03942 - formate dehydrogenase alpha subunit, at 41,889 to 44,840 _03942 Position (kb) 40 41 42Strain fitness (log2 ratio) -2 -1 0 1at 39.420 kb on - strand, within H281DRAFT_03939at 39.546 kb on + strand, within H281DRAFT_03939at 39.559 kb on + strand, within H281DRAFT_03939at 39.691 kb on + strandat 39.691 kb on + strandat 39.692 kb on - strandat 39.692 kb on - strandat 39.693 kb on + strandat 39.693 kb on + strandat 39.693 kb on + strandat 39.693 kb on + strandat 39.693 kb on + strandat 39.694 kb on - strandat 39.694 kb on - strandat 39.694 kb on - strandat 39.694 kb on - strandat 39.694 kb on - strandat 39.694 kb on - strandat 39.747 kb on - strandat 39.747 kb on - strandat 39.747 kb on - strandat 39.758 kb on - strandat 39.761 kb on - strandat 39.771 kb on + strandat 39.772 kb on - strandat 39.772 kb on - strandat 39.802 kb on - strandat 39.863 kb on + strandat 39.864 kb on - strandat 40.005 kb on + strand, within H281DRAFT_03940at 40.005 kb on + strand, within H281DRAFT_03940at 40.006 kb on - strand, within H281DRAFT_03940at 40.009 kb on + strand, within H281DRAFT_03940at 40.009 kb on + strand, within H281DRAFT_03940at 40.009 kb on + strand, within H281DRAFT_03940at 40.010 kb on - strand, within H281DRAFT_03940at 40.013 kb on - strand, within H281DRAFT_03940at 40.013 kb on - strand, within H281DRAFT_03940at 40.013 kb on - strand, within H281DRAFT_03940at 40.013 kb on - strand, within H281DRAFT_03940at 40.013 kb on - strand, within H281DRAFT_03940at 40.184 kb on - strand, within H281DRAFT_03940at 40.184 kb on - strand, within H281DRAFT_03940at 40.184 kb on - strand, within H281DRAFT_03940at 40.249 kb on - strand, within H281DRAFT_03940at 40.249 kb on - strand, within H281DRAFT_03940at 40.249 kb on - strand, within H281DRAFT_03940at 40.320 kb on + strandat 40.320 kb on + strandat 40.320 kb on + strandat 40.320 kb on + strandat 40.320 kb on + strandat 40.320 kb on + strandat 40.320 kb on + strandat 40.321 kb on - strandat 40.321 kb on - strandat 40.321 kb on - strandat 40.321 kb on - strandat 40.321 kb on - strandat 40.321 kb on - strandat 40.519 kb on + strand, within H281DRAFT_03941at 40.520 kb on - strand, within H281DRAFT_03941at 40.665 kb on + strand, within H281DRAFT_03941at 40.666 kb on - strand, within H281DRAFT_03941at 40.666 kb on - strand, within H281DRAFT_03941at 40.831 kb on - strand, within H281DRAFT_03941at 40.831 kb on - strand, within H281DRAFT_03941at 40.842 kb on - strand, within H281DRAFT_03941at 40.903 kb on - strand, within H281DRAFT_03941at 40.903 kb on - strand, within H281DRAFT_03941at 40.912 kb on + strand, within H281DRAFT_03941at 40.913 kb on - strand, within H281DRAFT_03941at 40.913 kb on - strand, within H281DRAFT_03941at 40.913 kb on - strand, within H281DRAFT_03941at 40.965 kb on + strand, within H281DRAFT_03941at 40.965 kb on + strand, within H281DRAFT_03941at 40.965 kb on + strand, within H281DRAFT_03941at 41.106 kb on + strand, within H281DRAFT_03941at 41.106 kb on + strand, within H281DRAFT_03941at 41.107 kb on - strand, within H281DRAFT_03941at 41.107 kb on - strand, within H281DRAFT_03941at 41.203 kb on - strand, within H281DRAFT_03941at 41.281 kb on - strand, within H281DRAFT_03941at 41.469 kb on + strand, within H281DRAFT_03941at 41.470 kb on - strand, within H281DRAFT_03941at 41.505 kb on + strand, within H281DRAFT_03941at 41.515 kb on - strand, within H281DRAFT_03941at 41.595 kb on + strand, within H281DRAFT_03941at 42.300 kb on + strand, within H281DRAFT_03942at 42.300 kb on + strand, within H281DRAFT_03942at 42.300 kb on + strand, within H281DRAFT_03942at 42.301 kb on - strand, within H281DRAFT_03942at 42.302 kb on + strand, within H281DRAFT_03942at 42.302 kb on + strand, within H281DRAFT_03942at 42.303 kb on - strand, within H281DRAFT_03942at 42.400 kb on - strand, within H281DRAFT_03942at 42.453 kb on + strand, within H281DRAFT_03942at 42.463 kb on - strand, within H281DRAFT_03942at 42.524 kb on + strand, within H281DRAFT_03942at 42.525 kb on - strand, within H281DRAFT_03942at 42.525 kb on - strand, within H281DRAFT_03942at 42.525 kb on - strand, within H281DRAFT_03942at 42.840 kb on + strand, within H281DRAFT_03942

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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39,420 - H281DRAFT_03939 0.75 -0.2
39,546 + H281DRAFT_03939 0.86 +1.0
39,559 + H281DRAFT_03939 0.88 -0.7
39,691 + +1.4
39,691 + +0.9
39,692 - +0.5
39,692 - +0.4
39,693 + +0.7
39,693 + +0.5
39,693 + -0.6
39,693 + +0.2
39,693 + +0.8
39,694 - -0.5
39,694 - -0.9
39,694 - -1.0
39,694 - -0.4
39,694 - -0.3
39,694 - -0.7
39,747 - -0.9
39,747 - +0.1
39,747 - -2.6
39,758 - +0.3
39,761 - -0.1
39,771 + +0.3
39,772 - -0.4
39,772 - -1.0
39,802 - +0.3
39,863 + +0.3
39,864 - -0.1
40,005 + H281DRAFT_03940 0.37 +0.5
40,005 + H281DRAFT_03940 0.37 +0.9
40,006 - H281DRAFT_03940 0.37 +0.3
40,009 + H281DRAFT_03940 0.38 +1.1
40,009 + H281DRAFT_03940 0.38 -0.6
40,009 + H281DRAFT_03940 0.38 +0.4
40,010 - H281DRAFT_03940 0.38 +0.2
40,013 - H281DRAFT_03940 0.38 -0.6
40,013 - H281DRAFT_03940 0.38 -0.8
40,013 - H281DRAFT_03940 0.38 +0.0
40,013 - H281DRAFT_03940 0.38 -0.3
40,013 - H281DRAFT_03940 0.38 -0.3
40,184 - H281DRAFT_03940 0.74 -0.0
40,184 - H281DRAFT_03940 0.74 +0.8
40,184 - H281DRAFT_03940 0.74 +0.1
40,249 - H281DRAFT_03940 0.87 +0.7
40,249 - H281DRAFT_03940 0.87 +0.3
40,249 - H281DRAFT_03940 0.87 +0.3
40,320 + +0.2
40,320 + +0.1
40,320 + +0.1
40,320 + -0.3
40,320 + +0.3
40,320 + -0.1
40,320 + +0.3
40,321 - +0.1
40,321 - +0.7
40,321 - +0.5
40,321 - +0.1
40,321 - -1.2
40,321 - -0.3
40,519 + H281DRAFT_03941 0.13 +0.4
40,520 - H281DRAFT_03941 0.14 +0.4
40,665 + H281DRAFT_03941 0.23 +0.0
40,666 - H281DRAFT_03941 0.23 +0.3
40,666 - H281DRAFT_03941 0.23 -0.6
40,831 - H281DRAFT_03941 0.33 +0.1
40,831 - H281DRAFT_03941 0.33 +0.3
40,842 - H281DRAFT_03941 0.34 +0.3
40,903 - H281DRAFT_03941 0.38 +0.2
40,903 - H281DRAFT_03941 0.38 +0.4
40,912 + H281DRAFT_03941 0.39 -0.3
40,913 - H281DRAFT_03941 0.39 +1.5
40,913 - H281DRAFT_03941 0.39 -0.3
40,913 - H281DRAFT_03941 0.39 -0.1
40,965 + H281DRAFT_03941 0.42 +0.6
40,965 + H281DRAFT_03941 0.42 +0.5
40,965 + H281DRAFT_03941 0.42 +0.1
41,106 + H281DRAFT_03941 0.51 +0.6
41,106 + H281DRAFT_03941 0.51 +0.2
41,107 - H281DRAFT_03941 0.51 +0.2
41,107 - H281DRAFT_03941 0.51 +0.2
41,203 - H281DRAFT_03941 0.57 -0.0
41,281 - H281DRAFT_03941 0.62 +1.1
41,469 + H281DRAFT_03941 0.74 -0.1
41,470 - H281DRAFT_03941 0.74 -0.2
41,505 + H281DRAFT_03941 0.76 +0.1
41,515 - H281DRAFT_03941 0.77 -0.1
41,595 + H281DRAFT_03941 0.82 -0.0
42,300 + H281DRAFT_03942 0.14 -0.0
42,300 + H281DRAFT_03942 0.14 -0.1
42,300 + H281DRAFT_03942 0.14 +0.4
42,301 - H281DRAFT_03942 0.14 -0.0
42,302 + H281DRAFT_03942 0.14 +0.4
42,302 + H281DRAFT_03942 0.14 -0.1
42,303 - H281DRAFT_03942 0.14 -0.9
42,400 - H281DRAFT_03942 0.17 +0.8
42,453 + H281DRAFT_03942 0.19 +0.6
42,463 - H281DRAFT_03942 0.19 -0.8
42,524 + H281DRAFT_03942 0.22 -1.5
42,525 - H281DRAFT_03942 0.22 +0.7
42,525 - H281DRAFT_03942 0.22 -0.4
42,525 - H281DRAFT_03942 0.22 +0.3
42,840 + H281DRAFT_03942 0.32 +0.4

Or see this region's nucleotide sequence