Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03497

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03495 and H281DRAFT_03496 are separated by 114 nucleotidesH281DRAFT_03496 and H281DRAFT_03497 are separated by 439 nucleotidesH281DRAFT_03497 and H281DRAFT_03498 are separated by 6 nucleotidesH281DRAFT_03498 and H281DRAFT_03499 are separated by 262 nucleotides H281DRAFT_03495: H281DRAFT_03495 - transcriptional regulator, XRE family, at 580,400 to 581,245 _03495 H281DRAFT_03496: H281DRAFT_03496 - hypothetical protein, at 581,360 to 581,569 _03496 H281DRAFT_03497: H281DRAFT_03497 - transcriptional regulator, DeoR family, at 582,009 to 582,764 _03497 H281DRAFT_03498: H281DRAFT_03498 - hypothetical protein, at 582,771 to 583,052 _03498 H281DRAFT_03499: H281DRAFT_03499 - 2-aminoethylphosphonate transport system substrate-binding protein, at 583,315 to 584,403 _03499 Position (kb) 582 583Strain fitness (log2 ratio) -1 0 1at 581.160 kb on + strand, within H281DRAFT_03495at 581.161 kb on - strandat 581.459 kb on - strand, within H281DRAFT_03496at 581.466 kb on - strand, within H281DRAFT_03496at 581.770 kb on + strandat 581.770 kb on + strandat 581.792 kb on - strandat 581.871 kb on + strandat 581.871 kb on + strandat 581.872 kb on - strandat 581.925 kb on - strandat 581.928 kb on + strandat 581.928 kb on + strandat 581.928 kb on + strandat 581.928 kb on + strandat 581.929 kb on - strandat 581.929 kb on - strandat 581.929 kb on - strandat 581.929 kb on - strandat 582.033 kb on + strandat 582.034 kb on - strandat 582.034 kb on - strandat 582.034 kb on - strandat 582.335 kb on - strand, within H281DRAFT_03497at 582.335 kb on - strand, within H281DRAFT_03497at 582.842 kb on + strand, within H281DRAFT_03498at 582.918 kb on - strand, within H281DRAFT_03498at 582.976 kb on + strand, within H281DRAFT_03498at 583.021 kb on + strand, within H281DRAFT_03498at 583.061 kb on + strandat 583.062 kb on - strandat 583.062 kb on - strandat 583.165 kb on + strandat 583.165 kb on + strandat 583.176 kb on + strandat 583.176 kb on + strandat 583.177 kb on - strandat 583.177 kb on - strandat 583.188 kb on - strandat 583.221 kb on - strandat 583.221 kb on - strandat 583.356 kb on + strandat 583.356 kb on + strandat 583.357 kb on - strandat 583.357 kb on - strandat 583.438 kb on + strand, within H281DRAFT_03499at 583.468 kb on - strand, within H281DRAFT_03499at 583.645 kb on + strand, within H281DRAFT_03499at 583.646 kb on - strand, within H281DRAFT_03499at 583.724 kb on - strand, within H281DRAFT_03499at 583.724 kb on - strand, within H281DRAFT_03499

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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581,160 + H281DRAFT_03495 0.90 +0.6
581,161 - -0.3
581,459 - H281DRAFT_03496 0.47 +0.4
581,466 - H281DRAFT_03496 0.50 +1.0
581,770 + -0.1
581,770 + -0.4
581,792 - +0.5
581,871 + +0.8
581,871 + -0.6
581,872 - +0.4
581,925 - +0.4
581,928 + +1.6
581,928 + -0.3
581,928 + +0.1
581,928 + +0.9
581,929 - +0.4
581,929 - -0.4
581,929 - +0.5
581,929 - +0.7
582,033 + +0.0
582,034 - +1.0
582,034 - +0.0
582,034 - +0.6
582,335 - H281DRAFT_03497 0.43 +0.6
582,335 - H281DRAFT_03497 0.43 +1.3
582,842 + H281DRAFT_03498 0.25 +0.8
582,918 - H281DRAFT_03498 0.52 +0.5
582,976 + H281DRAFT_03498 0.73 -0.2
583,021 + H281DRAFT_03498 0.89 -0.6
583,061 + +0.1
583,062 - +0.2
583,062 - -0.1
583,165 + +0.0
583,165 + +0.4
583,176 + +0.3
583,176 + +0.5
583,177 - +1.5
583,177 - +0.3
583,188 - +0.2
583,221 - +0.7
583,221 - -0.0
583,356 + +0.2
583,356 + +0.5
583,357 - +0.1
583,357 - +0.5
583,438 + H281DRAFT_03499 0.11 +0.1
583,468 - H281DRAFT_03499 0.14 +0.6
583,645 + H281DRAFT_03499 0.30 +0.3
583,646 - H281DRAFT_03499 0.30 +1.1
583,724 - H281DRAFT_03499 0.38 +0.9
583,724 - H281DRAFT_03499 0.38 +0.4

Or see this region's nucleotide sequence