Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03208

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03207 and H281DRAFT_03208 are separated by 203 nucleotidesH281DRAFT_03208 and H281DRAFT_03209 are separated by 394 nucleotides H281DRAFT_03207: H281DRAFT_03207 - MFS transporter, DHA2 family, methylenomycin A resistance protein, at 253,897 to 255,378 _03207 H281DRAFT_03208: H281DRAFT_03208 - Predicted arabinose efflux permease, MFS family, at 255,582 to 256,883 _03208 H281DRAFT_03209: H281DRAFT_03209 - DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain, at 257,278 to 258,000 _03209 Position (kb) 255 256 257Strain fitness (log2 ratio) -1 0 1at 255.360 kb on + strandat 255.383 kb on + strandat 255.384 kb on - strandat 255.384 kb on - strandat 255.384 kb on - strandat 255.384 kb on - strandat 255.390 kb on + strandat 255.454 kb on - strandat 255.498 kb on + strandat 255.652 kb on + strandat 255.652 kb on + strandat 255.653 kb on - strandat 255.653 kb on - strandat 255.739 kb on + strand, within H281DRAFT_03208at 255.740 kb on - strand, within H281DRAFT_03208at 255.892 kb on + strand, within H281DRAFT_03208at 255.892 kb on + strand, within H281DRAFT_03208at 255.893 kb on - strand, within H281DRAFT_03208at 255.893 kb on - strand, within H281DRAFT_03208at 255.895 kb on + strand, within H281DRAFT_03208at 256.109 kb on + strand, within H281DRAFT_03208at 256.109 kb on + strand, within H281DRAFT_03208at 256.491 kb on + strand, within H281DRAFT_03208at 256.531 kb on + strand, within H281DRAFT_03208at 256.531 kb on + strand, within H281DRAFT_03208at 256.531 kb on + strand, within H281DRAFT_03208at 256.532 kb on - strand, within H281DRAFT_03208at 256.775 kb on - strandat 256.819 kb on + strandat 256.969 kb on - strandat 257.266 kb on - strandat 257.266 kb on - strandat 257.538 kb on + strand, within H281DRAFT_03209at 257.539 kb on - strand, within H281DRAFT_03209at 257.539 kb on - strand, within H281DRAFT_03209at 257.539 kb on - strand, within H281DRAFT_03209at 257.573 kb on - strand, within H281DRAFT_03209at 257.638 kb on + strand, within H281DRAFT_03209at 257.672 kb on + strand, within H281DRAFT_03209

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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255,360 + +0.2
255,383 + -0.1
255,384 - -1.3
255,384 - -0.8
255,384 - -1.3
255,384 - -0.9
255,390 + -0.4
255,454 - -0.8
255,498 + +0.1
255,652 + -0.2
255,652 + +0.0
255,653 - +0.5
255,653 - +0.2
255,739 + H281DRAFT_03208 0.12 +0.7
255,740 - H281DRAFT_03208 0.12 +1.0
255,892 + H281DRAFT_03208 0.24 +0.6
255,892 + H281DRAFT_03208 0.24 +0.3
255,893 - H281DRAFT_03208 0.24 +0.1
255,893 - H281DRAFT_03208 0.24 -0.4
255,895 + H281DRAFT_03208 0.24 +0.3
256,109 + H281DRAFT_03208 0.40 +0.1
256,109 + H281DRAFT_03208 0.40 +1.5
256,491 + H281DRAFT_03208 0.70 +0.2
256,531 + H281DRAFT_03208 0.73 -0.3
256,531 + H281DRAFT_03208 0.73 +1.2
256,531 + H281DRAFT_03208 0.73 -0.2
256,532 - H281DRAFT_03208 0.73 -0.5
256,775 - -0.0
256,819 + -0.3
256,969 - +0.8
257,266 - -0.0
257,266 - +0.2
257,538 + H281DRAFT_03209 0.36 +0.6
257,539 - H281DRAFT_03209 0.36 -0.1
257,539 - H281DRAFT_03209 0.36 -1.3
257,539 - H281DRAFT_03209 0.36 +0.6
257,573 - H281DRAFT_03209 0.41 +0.2
257,638 + H281DRAFT_03209 0.50 -0.3
257,672 + H281DRAFT_03209 0.54 -0.4

Or see this region's nucleotide sequence