Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02008

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02007 and H281DRAFT_02008 are separated by 248 nucleotidesH281DRAFT_02008 and H281DRAFT_02009 are separated by 80 nucleotidesH281DRAFT_02009 and H281DRAFT_02010 are separated by 341 nucleotides H281DRAFT_02007: H281DRAFT_02007 - phosphoenolpyruvate--protein phosphotransferase, at 123,919 to 125,667 _02007 H281DRAFT_02008: H281DRAFT_02008 - phosphocarrier protein, at 125,916 to 126,185 _02008 H281DRAFT_02009: H281DRAFT_02009 - PTS system, ascorbate-specific IIA component, at 126,266 to 126,754 _02009 H281DRAFT_02010: H281DRAFT_02010 - glutathione synthase, at 127,096 to 128,052 _02010 Position (kb) 125 126 127Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 124.934 kb on + strand, within H281DRAFT_02007at 124.934 kb on + strand, within H281DRAFT_02007at 124.934 kb on + strand, within H281DRAFT_02007at 124.934 kb on + strandat 124.935 kb on - strand, within H281DRAFT_02007at 124.935 kb on - strand, within H281DRAFT_02007at 124.935 kb on - strand, within H281DRAFT_02007at 125.082 kb on + strand, within H281DRAFT_02007at 125.082 kb on + strand, within H281DRAFT_02007at 125.082 kb on + strand, within H281DRAFT_02007at 125.082 kb on + strand, within H281DRAFT_02007at 125.082 kb on + strand, within H281DRAFT_02007at 125.082 kb on + strand, within H281DRAFT_02007at 125.082 kb on + strand, within H281DRAFT_02007at 125.083 kb on - strand, within H281DRAFT_02007at 125.092 kb on - strand, within H281DRAFT_02007at 125.092 kb on - strand, within H281DRAFT_02007at 125.092 kb on - strand, within H281DRAFT_02007at 125.092 kb on - strand, within H281DRAFT_02007at 125.092 kb on - strand, within H281DRAFT_02007at 125.136 kb on + strand, within H281DRAFT_02007at 125.137 kb on - strand, within H281DRAFT_02007at 125.137 kb on - strand, within H281DRAFT_02007at 125.294 kb on + strand, within H281DRAFT_02007at 125.294 kb on + strand, within H281DRAFT_02007at 125.366 kb on + strand, within H281DRAFT_02007at 125.367 kb on - strand, within H281DRAFT_02007at 125.434 kb on + strand, within H281DRAFT_02007at 125.434 kb on + strand, within H281DRAFT_02007at 125.434 kb on + strand, within H281DRAFT_02007at 125.435 kb on - strand, within H281DRAFT_02007at 125.435 kb on - strand, within H281DRAFT_02007at 125.435 kb on - strand, within H281DRAFT_02007at 125.574 kb on - strandat 125.574 kb on - strandat 125.581 kb on + strandat 125.581 kb on + strandat 125.581 kb on + strandat 125.582 kb on - strandat 125.609 kb on + strandat 125.609 kb on + strandat 125.609 kb on + strandat 125.609 kb on + strandat 125.610 kb on - strandat 125.610 kb on - strandat 125.629 kb on - strandat 125.680 kb on + strandat 125.680 kb on + strandat 125.680 kb on + strandat 125.680 kb on + strandat 125.681 kb on - strandat 125.681 kb on - strandat 125.681 kb on - strandat 125.736 kb on - strandat 125.737 kb on + strandat 125.738 kb on - strandat 125.797 kb on + strandat 125.844 kb on + strandat 125.899 kb on + strandat 125.899 kb on + strandat 125.899 kb on + strandat 125.899 kb on + strandat 125.900 kb on - strandat 125.937 kb on - strandat 126.045 kb on - strand, within H281DRAFT_02008at 126.062 kb on + strand, within H281DRAFT_02008at 126.100 kb on + strand, within H281DRAFT_02008at 126.100 kb on + strand, within H281DRAFT_02008at 126.100 kb on + strand, within H281DRAFT_02008at 126.100 kb on + strand, within H281DRAFT_02008at 126.101 kb on - strand, within H281DRAFT_02008at 126.101 kb on - strand, within H281DRAFT_02008at 126.101 kb on - strand, within H281DRAFT_02008at 126.101 kb on - strand, within H281DRAFT_02008at 126.101 kb on - strand, within H281DRAFT_02008at 126.101 kb on - strand, within H281DRAFT_02008at 126.164 kb on + strandat 126.206 kb on + strandat 126.206 kb on + strandat 126.207 kb on - strandat 126.207 kb on - strandat 126.240 kb on + strandat 126.241 kb on - strandat 126.241 kb on - strandat 126.241 kb on - strandat 126.244 kb on + strandat 126.245 kb on - strandat 126.245 kb on - strandat 126.245 kb on - strandat 126.245 kb on - strandat 126.245 kb on - strandat 126.684 kb on + strand, within H281DRAFT_02009at 126.956 kb on + strandat 126.957 kb on - strandat 126.957 kb on - strandat 126.990 kb on + strandat 126.990 kb on + strandat 126.990 kb on + strandat 126.991 kb on - strandat 126.991 kb on - strandat 126.991 kb on - strandat 127.012 kb on - strandat 127.057 kb on + strandat 127.057 kb on + strandat 127.058 kb on - strandat 127.058 kb on - strandat 127.058 kb on - strandat 127.058 kb on - strandat 127.058 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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124,934 + H281DRAFT_02007 0.58 -0.2
124,934 + H281DRAFT_02007 0.58 -0.2
124,934 + H281DRAFT_02007 0.58 -0.2
124,934 + +1.0
124,935 - H281DRAFT_02007 0.58 +0.3
124,935 - H281DRAFT_02007 0.58 -1.8
124,935 - H281DRAFT_02007 0.58 -0.9
125,082 + H281DRAFT_02007 0.66 +0.2
125,082 + H281DRAFT_02007 0.66 -1.1
125,082 + H281DRAFT_02007 0.66 -0.0
125,082 + H281DRAFT_02007 0.66 +0.5
125,082 + H281DRAFT_02007 0.66 +0.5
125,082 + H281DRAFT_02007 0.66 -0.6
125,082 + H281DRAFT_02007 0.66 +0.6
125,083 - H281DRAFT_02007 0.67 -0.1
125,092 - H281DRAFT_02007 0.67 -0.4
125,092 - H281DRAFT_02007 0.67 -0.4
125,092 - H281DRAFT_02007 0.67 -0.2
125,092 - H281DRAFT_02007 0.67 -1.4
125,092 - H281DRAFT_02007 0.67 +0.5
125,136 + H281DRAFT_02007 0.70 +0.1
125,137 - H281DRAFT_02007 0.70 +0.5
125,137 - H281DRAFT_02007 0.70 -0.2
125,294 + H281DRAFT_02007 0.79 +0.1
125,294 + H281DRAFT_02007 0.79 +0.2
125,366 + H281DRAFT_02007 0.83 -0.5
125,367 - H281DRAFT_02007 0.83 -0.2
125,434 + H281DRAFT_02007 0.87 -0.2
125,434 + H281DRAFT_02007 0.87 -0.2
125,434 + H281DRAFT_02007 0.87 +0.3
125,435 - H281DRAFT_02007 0.87 -1.0
125,435 - H281DRAFT_02007 0.87 +0.0
125,435 - H281DRAFT_02007 0.87 -0.4
125,574 - -0.3
125,574 - +0.5
125,581 + -0.3
125,581 + -1.4
125,581 + -0.5
125,582 - -0.6
125,609 + +0.0
125,609 + +1.3
125,609 + +0.2
125,609 + +0.3
125,610 - -1.0
125,610 - -0.2
125,629 - -0.7
125,680 + +0.1
125,680 + -0.2
125,680 + -0.4
125,680 + +0.1
125,681 - -0.3
125,681 - -0.8
125,681 - -0.6
125,736 - -0.2
125,737 + +1.0
125,738 - -0.2
125,797 + +0.3
125,844 + -0.5
125,899 + +0.5
125,899 + -0.6
125,899 + -0.0
125,899 + +1.0
125,900 - -0.7
125,937 - +0.5
126,045 - H281DRAFT_02008 0.48 -3.8
126,062 + H281DRAFT_02008 0.54 -1.9
126,100 + H281DRAFT_02008 0.68 -2.6
126,100 + H281DRAFT_02008 0.68 -3.0
126,100 + H281DRAFT_02008 0.68 -1.0
126,100 + H281DRAFT_02008 0.68 -1.9
126,101 - H281DRAFT_02008 0.69 -2.7
126,101 - H281DRAFT_02008 0.69 -4.2
126,101 - H281DRAFT_02008 0.69 -3.1
126,101 - H281DRAFT_02008 0.69 -2.4
126,101 - H281DRAFT_02008 0.69 -5.9
126,101 - H281DRAFT_02008 0.69 -2.4
126,164 + -4.2
126,206 + -0.5
126,206 + -0.0
126,207 - -1.3
126,207 - -0.7
126,240 + +0.4
126,241 - +0.1
126,241 - -0.4
126,241 - +0.1
126,244 + -0.3
126,245 - +0.3
126,245 - +2.6
126,245 - +0.3
126,245 - +1.0
126,245 - -0.6
126,684 + H281DRAFT_02009 0.85 -1.4
126,956 + -2.8
126,957 - +0.1
126,957 - +0.2
126,990 + -1.0
126,990 + -0.7
126,990 + -0.3
126,991 - +0.3
126,991 - +0.0
126,991 - +0.0
127,012 - -0.5
127,057 + +0.8
127,057 + -0.4
127,058 - +0.2
127,058 - +0.5
127,058 - -0.0
127,058 - -0.3
127,058 - -0.4

Or see this region's nucleotide sequence