Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01996

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01994 and H281DRAFT_01995 are separated by 73 nucleotidesH281DRAFT_01995 and H281DRAFT_01996 are separated by 326 nucleotidesH281DRAFT_01996 and H281DRAFT_01997 are separated by 167 nucleotidesH281DRAFT_01997 and H281DRAFT_01998 are separated by 18 nucleotides H281DRAFT_01994: H281DRAFT_01994 - cytochrome c oxidase subunit 2, at 112,384 to 114,018 _01994 H281DRAFT_01995: H281DRAFT_01995 - Uncharacterized membrane protein, at 114,092 to 114,565 _01995 H281DRAFT_01996: H281DRAFT_01996 - malonyl-CoA O-methyltransferase, at 114,892 to 115,857 _01996 H281DRAFT_01997: H281DRAFT_01997 - comF family protein, at 116,025 to 116,726 _01997 H281DRAFT_01998: H281DRAFT_01998 - tRNA (cytidine/uridine-2'-O-)-methyltransferase, at 116,745 to 117,215 _01998 Position (kb) 114 115 116Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 113.994 kb on + strandat 113.995 kb on - strandat 114.112 kb on + strandat 114.113 kb on - strandat 114.113 kb on - strandat 114.113 kb on - strandat 114.291 kb on - strand, within H281DRAFT_01995at 114.291 kb on - strand, within H281DRAFT_01995at 114.291 kb on - strand, within H281DRAFT_01995at 114.345 kb on + strand, within H281DRAFT_01995at 114.345 kb on + strand, within H281DRAFT_01995at 114.345 kb on + strand, within H281DRAFT_01995at 114.345 kb on + strand, within H281DRAFT_01995at 114.346 kb on - strand, within H281DRAFT_01995at 114.346 kb on - strand, within H281DRAFT_01995at 114.346 kb on - strand, within H281DRAFT_01995at 114.346 kb on - strand, within H281DRAFT_01995at 114.346 kb on - strand, within H281DRAFT_01995at 114.346 kb on - strand, within H281DRAFT_01995at 114.465 kb on + strand, within H281DRAFT_01995at 114.465 kb on + strand, within H281DRAFT_01995at 114.465 kb on + strand, within H281DRAFT_01995at 114.465 kb on + strand, within H281DRAFT_01995at 114.466 kb on - strand, within H281DRAFT_01995at 114.466 kb on - strand, within H281DRAFT_01995at 114.466 kb on - strand, within H281DRAFT_01995at 114.466 kb on - strand, within H281DRAFT_01995at 114.466 kb on - strand, within H281DRAFT_01995at 114.466 kb on - strand, within H281DRAFT_01995at 114.648 kb on - strandat 114.751 kb on - strandat 114.869 kb on + strandat 114.869 kb on + strandat 114.870 kb on - strandat 114.870 kb on - strandat 114.870 kb on - strandat 114.870 kb on - strandat 114.885 kb on + strandat 114.886 kb on - strandat 114.886 kb on - strandat 114.886 kb on - strandat 114.886 kb on - strandat 115.886 kb on + strandat 115.886 kb on + strandat 115.886 kb on + strandat 115.887 kb on - strandat 115.887 kb on - strandat 115.956 kb on + strandat 115.956 kb on + strandat 115.957 kb on - strandat 115.957 kb on - strandat 116.106 kb on + strand, within H281DRAFT_01997at 116.184 kb on + strand, within H281DRAFT_01997at 116.184 kb on + strand, within H281DRAFT_01997at 116.184 kb on + strand, within H281DRAFT_01997at 116.427 kb on + strand, within H281DRAFT_01997at 116.428 kb on - strand, within H281DRAFT_01997at 116.429 kb on + strand, within H281DRAFT_01997at 116.429 kb on + strand, within H281DRAFT_01997at 116.605 kb on + strand, within H281DRAFT_01997at 116.605 kb on + strand, within H281DRAFT_01997at 116.606 kb on - strand, within H281DRAFT_01997at 116.606 kb on - strand, within H281DRAFT_01997at 116.606 kb on - strand, within H281DRAFT_01997at 116.606 kb on - strand, within H281DRAFT_01997at 116.623 kb on + strand, within H281DRAFT_01997at 116.623 kb on + strand, within H281DRAFT_01997at 116.623 kb on + strand, within H281DRAFT_01997at 116.623 kb on + strand, within H281DRAFT_01997at 116.624 kb on - strand, within H281DRAFT_01997at 116.624 kb on - strand, within H281DRAFT_01997at 116.624 kb on - strand, within H281DRAFT_01997at 116.624 kb on - strand, within H281DRAFT_01997at 116.725 kb on - strandat 116.731 kb on + strandat 116.732 kb on - strandat 116.744 kb on + strandat 116.744 kb on + strandat 116.744 kb on + strandat 116.744 kb on + strandat 116.744 kb on + strandat 116.745 kb on - strandat 116.745 kb on - strandat 116.745 kb on - strandat 116.745 kb on - strandat 116.806 kb on + strand, within H281DRAFT_01998

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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113,994 + -0.8
113,995 - -0.4
114,112 + -0.0
114,113 - +1.0
114,113 - +0.0
114,113 - -0.1
114,291 - H281DRAFT_01995 0.42 -0.0
114,291 - H281DRAFT_01995 0.42 +0.5
114,291 - H281DRAFT_01995 0.42 -0.0
114,345 + H281DRAFT_01995 0.53 -2.3
114,345 + H281DRAFT_01995 0.53 -1.1
114,345 + H281DRAFT_01995 0.53 -1.0
114,345 + H281DRAFT_01995 0.53 -2.9
114,346 - H281DRAFT_01995 0.54 +0.3
114,346 - H281DRAFT_01995 0.54 -0.2
114,346 - H281DRAFT_01995 0.54 +0.1
114,346 - H281DRAFT_01995 0.54 +0.0
114,346 - H281DRAFT_01995 0.54 -0.2
114,346 - H281DRAFT_01995 0.54 -0.1
114,465 + H281DRAFT_01995 0.79 -2.9
114,465 + H281DRAFT_01995 0.79 -1.2
114,465 + H281DRAFT_01995 0.79 -3.4
114,465 + H281DRAFT_01995 0.79 -1.3
114,466 - H281DRAFT_01995 0.79 -0.1
114,466 - H281DRAFT_01995 0.79 -0.0
114,466 - H281DRAFT_01995 0.79 +0.0
114,466 - H281DRAFT_01995 0.79 +0.5
114,466 - H281DRAFT_01995 0.79 +0.5
114,466 - H281DRAFT_01995 0.79 -0.6
114,648 - -0.3
114,751 - -0.4
114,869 + +0.4
114,869 + +0.2
114,870 - -0.0
114,870 - +0.2
114,870 - -0.4
114,870 - +0.3
114,885 + -0.2
114,886 - -0.6
114,886 - -0.4
114,886 - -0.7
114,886 - +0.6
115,886 + -0.7
115,886 + +0.4
115,886 + +0.2
115,887 - +0.6
115,887 - -0.5
115,956 + -0.1
115,956 + -0.2
115,957 - +0.7
115,957 - +1.0
116,106 + H281DRAFT_01997 0.12 -1.0
116,184 + H281DRAFT_01997 0.23 +1.0
116,184 + H281DRAFT_01997 0.23 -0.0
116,184 + H281DRAFT_01997 0.23 -0.3
116,427 + H281DRAFT_01997 0.57 -0.7
116,428 - H281DRAFT_01997 0.57 +0.1
116,429 + H281DRAFT_01997 0.58 -0.0
116,429 + H281DRAFT_01997 0.58 +0.5
116,605 + H281DRAFT_01997 0.83 +0.4
116,605 + H281DRAFT_01997 0.83 -0.0
116,606 - H281DRAFT_01997 0.83 -0.2
116,606 - H281DRAFT_01997 0.83 +0.0
116,606 - H281DRAFT_01997 0.83 +0.6
116,606 - H281DRAFT_01997 0.83 -0.5
116,623 + H281DRAFT_01997 0.85 +0.4
116,623 + H281DRAFT_01997 0.85 +0.6
116,623 + H281DRAFT_01997 0.85 -0.0
116,623 + H281DRAFT_01997 0.85 -0.1
116,624 - H281DRAFT_01997 0.85 -0.5
116,624 - H281DRAFT_01997 0.85 +0.0
116,624 - H281DRAFT_01997 0.85 -0.0
116,624 - H281DRAFT_01997 0.85 +0.3
116,725 - +0.3
116,731 + -1.0
116,732 - -0.5
116,744 + -1.6
116,744 + +0.2
116,744 + +2.6
116,744 + +0.2
116,744 + -0.1
116,745 - -0.8
116,745 - +0.4
116,745 - +0.8
116,745 - -0.2
116,806 + H281DRAFT_01998 0.13 -0.0

Or see this region's nucleotide sequence