Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01964

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01963 and H281DRAFT_01964 are separated by 74 nucleotidesH281DRAFT_01964 and H281DRAFT_01965 are separated by 52 nucleotidesH281DRAFT_01965 and H281DRAFT_01966 are separated by 145 nucleotides H281DRAFT_01963: H281DRAFT_01963 - Reverse gyrase, at 82,420 to 83,820 _01963 H281DRAFT_01964: H281DRAFT_01964 - hypothetical protein, at 83,895 to 84,338 _01964 H281DRAFT_01965: H281DRAFT_01965 - hypothetical protein, at 84,391 to 84,558 _01965 H281DRAFT_01966: H281DRAFT_01966 - Site-specific recombinase XerD, at 84,704 to 85,690 _01966 Position (kb) 83 84 85Strain fitness (log2 ratio) -2 -1 0 1 2at 82.921 kb on + strand, within H281DRAFT_01963at 82.922 kb on - strand, within H281DRAFT_01963at 82.922 kb on - strand, within H281DRAFT_01963at 82.922 kb on - strand, within H281DRAFT_01963at 82.922 kb on - strand, within H281DRAFT_01963at 82.946 kb on - strand, within H281DRAFT_01963at 82.946 kb on - strand, within H281DRAFT_01963at 82.975 kb on + strand, within H281DRAFT_01963at 82.975 kb on + strand, within H281DRAFT_01963at 82.975 kb on + strand, within H281DRAFT_01963at 82.975 kb on + strand, within H281DRAFT_01963at 82.976 kb on - strand, within H281DRAFT_01963at 82.993 kb on + strand, within H281DRAFT_01963at 82.993 kb on + strand, within H281DRAFT_01963at 82.994 kb on - strand, within H281DRAFT_01963at 82.994 kb on - strand, within H281DRAFT_01963at 82.994 kb on - strand, within H281DRAFT_01963at 82.994 kb on - strand, within H281DRAFT_01963at 82.994 kb on - strand, within H281DRAFT_01963at 83.055 kb on + strand, within H281DRAFT_01963at 83.055 kb on + strand, within H281DRAFT_01963at 83.069 kb on + strand, within H281DRAFT_01963at 83.069 kb on + strand, within H281DRAFT_01963at 83.070 kb on - strand, within H281DRAFT_01963at 83.070 kb on - strand, within H281DRAFT_01963at 83.095 kb on + strand, within H281DRAFT_01963at 83.096 kb on - strand, within H281DRAFT_01963at 83.141 kb on + strand, within H281DRAFT_01963at 83.141 kb on + strand, within H281DRAFT_01963at 83.141 kb on + strand, within H281DRAFT_01963at 83.142 kb on - strand, within H281DRAFT_01963at 83.142 kb on - strand, within H281DRAFT_01963at 83.143 kb on + strand, within H281DRAFT_01963at 83.143 kb on + strand, within H281DRAFT_01963at 83.143 kb on + strand, within H281DRAFT_01963at 83.144 kb on - strand, within H281DRAFT_01963at 83.144 kb on - strand, within H281DRAFT_01963at 83.144 kb on - strand, within H281DRAFT_01963at 83.245 kb on + strand, within H281DRAFT_01963at 83.245 kb on + strand, within H281DRAFT_01963at 83.246 kb on - strand, within H281DRAFT_01963at 83.246 kb on - strand, within H281DRAFT_01963at 83.246 kb on - strand, within H281DRAFT_01963at 83.289 kb on + strand, within H281DRAFT_01963at 83.290 kb on - strand, within H281DRAFT_01963at 83.290 kb on - strand, within H281DRAFT_01963at 83.290 kb on - strand, within H281DRAFT_01963at 83.290 kb on - strand, within H281DRAFT_01963at 83.290 kb on - strand, within H281DRAFT_01963at 83.304 kb on + strand, within H281DRAFT_01963at 83.305 kb on - strand, within H281DRAFT_01963at 83.356 kb on + strand, within H281DRAFT_01963at 83.356 kb on + strand, within H281DRAFT_01963at 83.356 kb on + strand, within H281DRAFT_01963at 83.357 kb on - strand, within H281DRAFT_01963at 83.357 kb on - strand, within H281DRAFT_01963at 83.357 kb on - strand, within H281DRAFT_01963at 83.357 kb on - strand, within H281DRAFT_01963at 83.363 kb on - strand, within H281DRAFT_01963at 83.363 kb on - strand, within H281DRAFT_01963at 83.420 kb on + strand, within H281DRAFT_01963at 83.420 kb on + strand, within H281DRAFT_01963at 83.420 kb on + strand, within H281DRAFT_01963at 83.420 kb on + strand, within H281DRAFT_01963at 83.420 kb on + strand, within H281DRAFT_01963at 83.420 kb on + strand, within H281DRAFT_01963at 83.420 kb on + strand, within H281DRAFT_01963at 83.420 kb on + strand, within H281DRAFT_01963at 83.421 kb on - strand, within H281DRAFT_01963at 83.421 kb on - strand, within H281DRAFT_01963at 83.421 kb on - strand, within H281DRAFT_01963at 83.440 kb on + strand, within H281DRAFT_01963at 83.440 kb on + strand, within H281DRAFT_01963at 83.441 kb on - strand, within H281DRAFT_01963at 83.441 kb on - strand, within H281DRAFT_01963at 83.488 kb on + strand, within H281DRAFT_01963at 83.488 kb on + strand, within H281DRAFT_01963at 83.488 kb on + strand, within H281DRAFT_01963at 83.489 kb on - strand, within H281DRAFT_01963at 83.489 kb on - strand, within H281DRAFT_01963at 83.489 kb on - strand, within H281DRAFT_01963at 83.489 kb on - strand, within H281DRAFT_01963at 83.566 kb on + strand, within H281DRAFT_01963at 83.567 kb on - strand, within H281DRAFT_01963at 83.586 kb on + strand, within H281DRAFT_01963at 83.586 kb on + strand, within H281DRAFT_01963at 83.587 kb on - strand, within H281DRAFT_01963at 83.653 kb on + strand, within H281DRAFT_01963at 83.653 kb on + strand, within H281DRAFT_01963at 83.665 kb on + strand, within H281DRAFT_01963at 83.666 kb on - strand, within H281DRAFT_01963at 83.892 kb on + strandat 83.893 kb on - strandat 83.893 kb on - strandat 83.893 kb on - strandat 83.909 kb on + strandat 84.152 kb on + strand, within H281DRAFT_01964at 84.152 kb on + strand, within H281DRAFT_01964at 84.152 kb on + strand, within H281DRAFT_01964at 84.152 kb on + strand, within H281DRAFT_01964at 84.165 kb on + strand, within H281DRAFT_01964at 84.166 kb on - strand, within H281DRAFT_01964at 84.284 kb on + strand, within H281DRAFT_01964at 84.302 kb on + strandat 84.302 kb on + strandat 84.311 kb on + strandat 84.312 kb on - strandat 84.312 kb on - strandat 84.312 kb on - strandat 84.312 kb on - strandat 84.312 kb on - strandat 84.312 kb on - strandat 84.365 kb on + strandat 84.366 kb on - strandat 84.366 kb on - strandat 84.369 kb on + strandat 84.369 kb on + strandat 84.370 kb on - strandat 84.383 kb on + strandat 84.384 kb on - strandat 84.397 kb on + strandat 84.397 kb on + strandat 84.397 kb on + strandat 84.397 kb on + strandat 84.398 kb on - strandat 84.398 kb on - strandat 84.403 kb on + strandat 84.503 kb on + strand, within H281DRAFT_01965at 84.504 kb on - strand, within H281DRAFT_01965at 84.509 kb on + strand, within H281DRAFT_01965at 84.616 kb on + strandat 84.653 kb on - strandat 84.659 kb on + strandat 84.659 kb on + strandat 84.659 kb on + strandat 84.670 kb on - strandat 84.671 kb on + strandat 84.671 kb on + strandat 84.672 kb on - strandat 84.744 kb on + strandat 84.744 kb on + strandat 84.745 kb on - strandat 84.983 kb on - strand, within H281DRAFT_01966at 85.025 kb on + strand, within H281DRAFT_01966at 85.025 kb on + strand, within H281DRAFT_01966at 85.025 kb on + strand, within H281DRAFT_01966at 85.025 kb on + strand, within H281DRAFT_01966at 85.025 kb on + strand, within H281DRAFT_01966at 85.026 kb on - strand, within H281DRAFT_01966at 85.026 kb on - strand, within H281DRAFT_01966at 85.029 kb on + strand, within H281DRAFT_01966at 85.029 kb on + strand, within H281DRAFT_01966at 85.029 kb on + strand, within H281DRAFT_01966

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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82,921 + H281DRAFT_01963 0.36 -0.1
82,922 - H281DRAFT_01963 0.36 +0.1
82,922 - H281DRAFT_01963 0.36 +1.0
82,922 - H281DRAFT_01963 0.36 +0.7
82,922 - H281DRAFT_01963 0.36 -0.2
82,946 - H281DRAFT_01963 0.38 +0.6
82,946 - H281DRAFT_01963 0.38 +0.2
82,975 + H281DRAFT_01963 0.40 +0.2
82,975 + H281DRAFT_01963 0.40 -0.4
82,975 + H281DRAFT_01963 0.40 -0.5
82,975 + H281DRAFT_01963 0.40 +0.5
82,976 - H281DRAFT_01963 0.40 +0.1
82,993 + H281DRAFT_01963 0.41 +0.5
82,993 + H281DRAFT_01963 0.41 -0.1
82,994 - H281DRAFT_01963 0.41 +1.4
82,994 - H281DRAFT_01963 0.41 +0.2
82,994 - H281DRAFT_01963 0.41 +0.1
82,994 - H281DRAFT_01963 0.41 -0.6
82,994 - H281DRAFT_01963 0.41 +0.0
83,055 + H281DRAFT_01963 0.45 -0.4
83,055 + H281DRAFT_01963 0.45 +0.8
83,069 + H281DRAFT_01963 0.46 +1.0
83,069 + H281DRAFT_01963 0.46 +0.8
83,070 - H281DRAFT_01963 0.46 +0.5
83,070 - H281DRAFT_01963 0.46 +0.5
83,095 + H281DRAFT_01963 0.48 -0.2
83,096 - H281DRAFT_01963 0.48 +0.8
83,141 + H281DRAFT_01963 0.51 +0.6
83,141 + H281DRAFT_01963 0.51 +0.1
83,141 + H281DRAFT_01963 0.51 +2.2
83,142 - H281DRAFT_01963 0.52 +0.3
83,142 - H281DRAFT_01963 0.52 -0.4
83,143 + H281DRAFT_01963 0.52 +0.2
83,143 + H281DRAFT_01963 0.52 -0.0
83,143 + H281DRAFT_01963 0.52 +0.2
83,144 - H281DRAFT_01963 0.52 -0.1
83,144 - H281DRAFT_01963 0.52 +0.5
83,144 - H281DRAFT_01963 0.52 -0.6
83,245 + H281DRAFT_01963 0.59 -0.5
83,245 + H281DRAFT_01963 0.59 +1.5
83,246 - H281DRAFT_01963 0.59 +0.3
83,246 - H281DRAFT_01963 0.59 +0.7
83,246 - H281DRAFT_01963 0.59 +0.9
83,289 + H281DRAFT_01963 0.62 +0.6
83,290 - H281DRAFT_01963 0.62 -0.5
83,290 - H281DRAFT_01963 0.62 -0.2
83,290 - H281DRAFT_01963 0.62 -0.2
83,290 - H281DRAFT_01963 0.62 +0.8
83,290 - H281DRAFT_01963 0.62 +0.6
83,304 + H281DRAFT_01963 0.63 +0.4
83,305 - H281DRAFT_01963 0.63 +1.2
83,356 + H281DRAFT_01963 0.67 -0.5
83,356 + H281DRAFT_01963 0.67 -0.5
83,356 + H281DRAFT_01963 0.67 -0.1
83,357 - H281DRAFT_01963 0.67 -0.1
83,357 - H281DRAFT_01963 0.67 +0.0
83,357 - H281DRAFT_01963 0.67 +0.2
83,357 - H281DRAFT_01963 0.67 +0.4
83,363 - H281DRAFT_01963 0.67 +0.2
83,363 - H281DRAFT_01963 0.67 -0.1
83,420 + H281DRAFT_01963 0.71 +0.5
83,420 + H281DRAFT_01963 0.71 +0.1
83,420 + H281DRAFT_01963 0.71 -0.1
83,420 + H281DRAFT_01963 0.71 +0.1
83,420 + H281DRAFT_01963 0.71 -0.3
83,420 + H281DRAFT_01963 0.71 +0.5
83,420 + H281DRAFT_01963 0.71 -0.1
83,420 + H281DRAFT_01963 0.71 +0.0
83,421 - H281DRAFT_01963 0.71 -0.8
83,421 - H281DRAFT_01963 0.71 -0.2
83,421 - H281DRAFT_01963 0.71 -0.6
83,440 + H281DRAFT_01963 0.73 -0.0
83,440 + H281DRAFT_01963 0.73 +0.2
83,441 - H281DRAFT_01963 0.73 -0.2
83,441 - H281DRAFT_01963 0.73 -0.4
83,488 + H281DRAFT_01963 0.76 +0.8
83,488 + H281DRAFT_01963 0.76 -0.3
83,488 + H281DRAFT_01963 0.76 +1.1
83,489 - H281DRAFT_01963 0.76 +0.1
83,489 - H281DRAFT_01963 0.76 -0.1
83,489 - H281DRAFT_01963 0.76 +0.7
83,489 - H281DRAFT_01963 0.76 -1.3
83,566 + H281DRAFT_01963 0.82 +0.6
83,567 - H281DRAFT_01963 0.82 -0.0
83,586 + H281DRAFT_01963 0.83 +0.3
83,586 + H281DRAFT_01963 0.83 +0.6
83,587 - H281DRAFT_01963 0.83 +0.4
83,653 + H281DRAFT_01963 0.88 +0.2
83,653 + H281DRAFT_01963 0.88 -1.0
83,665 + H281DRAFT_01963 0.89 +0.8
83,666 - H281DRAFT_01963 0.89 +0.2
83,892 + +0.3
83,893 - -0.9
83,893 - +0.3
83,893 - -0.1
83,909 + -0.3
84,152 + H281DRAFT_01964 0.58 -0.0
84,152 + H281DRAFT_01964 0.58 +0.6
84,152 + H281DRAFT_01964 0.58 +0.5
84,152 + H281DRAFT_01964 0.58 +0.1
84,165 + H281DRAFT_01964 0.61 -0.2
84,166 - H281DRAFT_01964 0.61 +1.4
84,284 + H281DRAFT_01964 0.88 +1.3
84,302 + -0.1
84,302 + -0.3
84,311 + -0.3
84,312 - -0.0
84,312 - -0.2
84,312 - -0.3
84,312 - +0.0
84,312 - -0.3
84,312 - -0.0
84,365 + +0.6
84,366 - +0.7
84,366 - -0.0
84,369 + +0.2
84,369 + +0.7
84,370 - -1.0
84,383 + -0.2
84,384 - -0.3
84,397 + +0.2
84,397 + +0.7
84,397 + -0.1
84,397 + +0.2
84,398 - +1.1
84,398 - +0.4
84,403 + +0.0
84,503 + H281DRAFT_01965 0.67 -0.2
84,504 - H281DRAFT_01965 0.67 +0.4
84,509 + H281DRAFT_01965 0.70 -2.4
84,616 + +0.2
84,653 - -0.6
84,659 + +1.0
84,659 + -0.2
84,659 + -0.3
84,670 - -0.2
84,671 + +0.6
84,671 + -0.1
84,672 - +0.3
84,744 + -0.6
84,744 + +0.1
84,745 - +0.2
84,983 - H281DRAFT_01966 0.28 -0.3
85,025 + H281DRAFT_01966 0.33 -1.8
85,025 + H281DRAFT_01966 0.33 +0.7
85,025 + H281DRAFT_01966 0.33 -0.3
85,025 + H281DRAFT_01966 0.33 -0.1
85,025 + H281DRAFT_01966 0.33 +0.3
85,026 - H281DRAFT_01966 0.33 -1.4
85,026 - H281DRAFT_01966 0.33 -0.3
85,029 + H281DRAFT_01966 0.33 +0.8
85,029 + H281DRAFT_01966 0.33 -0.1
85,029 + H281DRAFT_01966 0.33 +1.0

Or see this region's nucleotide sequence