Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01932

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_01931 and H281DRAFT_01932 are separated by 39 nucleotidesH281DRAFT_01932 and H281DRAFT_01933 are separated by 23 nucleotides H281DRAFT_01931: H281DRAFT_01931 - UPF0042 nucleotide-binding protein, at 48,229 to 49,122 _01931 H281DRAFT_01932: H281DRAFT_01932 - hypothetical protein, at 49,162 to 49,797 _01932 H281DRAFT_01933: H281DRAFT_01933 - A/G-specific DNA-adenine glycosylase, at 49,821 to 50,969 _01933 Position (kb) 49 50Strain fitness (log2 ratio) -1 0 1 2at 48.199 kb on + strandat 48.199 kb on + strandat 48.199 kb on + strandat 48.200 kb on - strandat 48.200 kb on - strandat 48.200 kb on - strandat 48.200 kb on - strandat 48.254 kb on + strandat 48.305 kb on - strandat 48.305 kb on - strandat 48.305 kb on - strandat 48.307 kb on + strandat 48.308 kb on - strandat 48.356 kb on - strand, within H281DRAFT_01931at 48.797 kb on + strand, within H281DRAFT_01931at 48.798 kb on - strand, within H281DRAFT_01931at 48.798 kb on - strand, within H281DRAFT_01931at 48.798 kb on - strand, within H281DRAFT_01931at 48.817 kb on + strand, within H281DRAFT_01931at 48.990 kb on + strand, within H281DRAFT_01931at 48.991 kb on - strand, within H281DRAFT_01931at 48.991 kb on - strand, within H281DRAFT_01931at 49.050 kb on + strandat 49.050 kb on + strandat 49.171 kb on - strandat 49.171 kb on - strandat 49.171 kb on - strandat 49.171 kb on - strandat 49.171 kb on - strandat 49.176 kb on + strandat 49.176 kb on + strandat 49.176 kb on + strandat 49.177 kb on - strandat 49.177 kb on - strandat 49.212 kb on + strandat 49.213 kb on - strandat 49.213 kb on - strandat 49.265 kb on - strand, within H281DRAFT_01932at 49.504 kb on - strand, within H281DRAFT_01932at 49.536 kb on - strand, within H281DRAFT_01932at 49.542 kb on + strand, within H281DRAFT_01932at 49.542 kb on + strand, within H281DRAFT_01932at 49.542 kb on + strand, within H281DRAFT_01932at 49.543 kb on - strand, within H281DRAFT_01932at 49.691 kb on + strand, within H281DRAFT_01932at 49.692 kb on - strand, within H281DRAFT_01932at 49.771 kb on + strandat 49.771 kb on + strandat 49.772 kb on - strandat 49.772 kb on - strandat 49.773 kb on + strandat 49.773 kb on + strandat 49.773 kb on + strandat 49.773 kb on + strandat 49.774 kb on - strandat 49.774 kb on - strandat 49.774 kb on - strandat 49.774 kb on - strandat 49.774 kb on - strandat 49.795 kb on + strandat 49.795 kb on + strandat 49.796 kb on - strandat 49.796 kb on - strandat 49.927 kb on - strandat 49.949 kb on + strand, within H281DRAFT_01933at 49.949 kb on + strand, within H281DRAFT_01933at 50.338 kb on + strandat 50.338 kb on + strand, within H281DRAFT_01933at 50.338 kb on + strand, within H281DRAFT_01933at 50.339 kb on - strand, within H281DRAFT_01933at 50.339 kb on - strand, within H281DRAFT_01933at 50.457 kb on + strand, within H281DRAFT_01933at 50.458 kb on - strand, within H281DRAFT_01933at 50.641 kb on + strand, within H281DRAFT_01933at 50.641 kb on + strand, within H281DRAFT_01933at 50.642 kb on - strand, within H281DRAFT_01933at 50.642 kb on - strand, within H281DRAFT_01933at 50.642 kb on - strand, within H281DRAFT_01933at 50.644 kb on + strand, within H281DRAFT_01933at 50.734 kb on + strand, within H281DRAFT_01933at 50.734 kb on + strand, within H281DRAFT_01933at 50.734 kb on + strandat 50.735 kb on - strand, within H281DRAFT_01933at 50.735 kb on - strand, within H281DRAFT_01933

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
remove
48,199 + -0.3
48,199 + -0.0
48,199 + -0.3
48,200 - -0.0
48,200 - +2.4
48,200 - +0.5
48,200 - +0.8
48,254 + +0.9
48,305 - -0.3
48,305 - +0.0
48,305 - +0.9
48,307 + -1.4
48,308 - +0.3
48,356 - H281DRAFT_01931 0.14 -0.2
48,797 + H281DRAFT_01931 0.64 +0.0
48,798 - H281DRAFT_01931 0.64 -0.3
48,798 - H281DRAFT_01931 0.64 -0.3
48,798 - H281DRAFT_01931 0.64 +0.1
48,817 + H281DRAFT_01931 0.66 -0.4
48,990 + H281DRAFT_01931 0.85 -0.7
48,991 - H281DRAFT_01931 0.85 +1.7
48,991 - H281DRAFT_01931 0.85 +0.2
49,050 + +0.5
49,050 + -0.7
49,171 - +0.8
49,171 - +0.0
49,171 - +0.0
49,171 - +0.2
49,171 - +0.2
49,176 + +0.4
49,176 + +1.4
49,176 + +0.6
49,177 - -0.8
49,177 - +0.2
49,212 + +0.6
49,213 - -0.2
49,213 - +1.0
49,265 - H281DRAFT_01932 0.16 +1.4
49,504 - H281DRAFT_01932 0.54 +0.6
49,536 - H281DRAFT_01932 0.59 +0.1
49,542 + H281DRAFT_01932 0.60 -0.2
49,542 + H281DRAFT_01932 0.60 +0.5
49,542 + H281DRAFT_01932 0.60 +0.6
49,543 - H281DRAFT_01932 0.60 +0.5
49,691 + H281DRAFT_01932 0.83 +0.9
49,692 - H281DRAFT_01932 0.83 +0.3
49,771 + -0.1
49,771 + +0.2
49,772 - +1.0
49,772 - +0.2
49,773 + -0.1
49,773 + +0.7
49,773 + +0.6
49,773 + +0.6
49,774 - +0.2
49,774 - +0.3
49,774 - +2.0
49,774 - +0.4
49,774 - +1.0
49,795 + -0.4
49,795 + +0.5
49,796 - +0.6
49,796 - +0.8
49,927 - +0.4
49,949 + H281DRAFT_01933 0.11 -0.3
49,949 + H281DRAFT_01933 0.11 +0.4
50,338 + -1.0
50,338 + H281DRAFT_01933 0.45 +0.6
50,338 + H281DRAFT_01933 0.45 +0.3
50,339 - H281DRAFT_01933 0.45 +0.7
50,339 - H281DRAFT_01933 0.45 +1.2
50,457 + H281DRAFT_01933 0.55 -0.2
50,458 - H281DRAFT_01933 0.55 -1.1
50,641 + H281DRAFT_01933 0.71 -0.2
50,641 + H281DRAFT_01933 0.71 -0.3
50,642 - H281DRAFT_01933 0.71 +0.2
50,642 - H281DRAFT_01933 0.71 +0.5
50,642 - H281DRAFT_01933 0.71 +0.1
50,644 + H281DRAFT_01933 0.72 +0.4
50,734 + H281DRAFT_01933 0.79 +0.0
50,734 + H281DRAFT_01933 0.79 -0.3
50,734 + +1.4
50,735 - H281DRAFT_01933 0.80 +0.5
50,735 - H281DRAFT_01933 0.80 +0.2

Or see this region's nucleotide sequence