Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01514

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01513 and H281DRAFT_01514 are separated by 97 nucleotidesH281DRAFT_01514 and H281DRAFT_01515 are separated by 80 nucleotides H281DRAFT_01513: H281DRAFT_01513 - hippurate hydrolase, at 383,305 to 384,495 _01513 H281DRAFT_01514: H281DRAFT_01514 - ribose 1,5-bisphosphokinase, at 384,593 to 385,144 _01514 H281DRAFT_01515: H281DRAFT_01515 - transcriptional regulator, GntR family, at 385,225 to 386,058 _01515 Position (kb) 384 385 386Strain fitness (log2 ratio) -1 0 1at 383.598 kb on + strand, within H281DRAFT_01513at 383.625 kb on - strand, within H281DRAFT_01513at 383.902 kb on + strand, within H281DRAFT_01513at 384.287 kb on - strand, within H281DRAFT_01513at 384.392 kb on + strandat 384.551 kb on - strandat 384.594 kb on + strandat 385.028 kb on - strand, within H281DRAFT_01514at 385.032 kb on + strand, within H281DRAFT_01514at 385.126 kb on - strandat 385.674 kb on + strand, within H281DRAFT_01515

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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383,598 + H281DRAFT_01513 0.25 -0.1
383,625 - H281DRAFT_01513 0.27 +0.1
383,902 + H281DRAFT_01513 0.50 -0.5
384,287 - H281DRAFT_01513 0.82 -0.1
384,392 + +0.2
384,551 - -0.1
384,594 + -0.3
385,028 - H281DRAFT_01514 0.79 -0.1
385,032 + H281DRAFT_01514 0.80 +1.1
385,126 - -0.8
385,674 + H281DRAFT_01515 0.54 +0.3

Or see this region's nucleotide sequence