Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01195

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01194 and H281DRAFT_01195 are separated by 310 nucleotidesH281DRAFT_01195 and H281DRAFT_01196 are separated by 410 nucleotides H281DRAFT_01194: H281DRAFT_01194 - amino acid/amide ABC transporter substrate-binding protein, HAAT family (TC 3.A.1.4.-), at 30,655 to 31,806 _01194 H281DRAFT_01195: H281DRAFT_01195 - 4-hydroxy-tetrahydrodipicolinate synthase, at 32,117 to 33,061 _01195 H281DRAFT_01196: H281DRAFT_01196 - transcriptional regulator, PadR family, at 33,472 to 34,284 _01196 Position (kb) 32 33 34Strain fitness (log2 ratio) -1 0 1 2at 31.119 kb on - strandat 31.119 kb on - strand, within H281DRAFT_01194at 31.194 kb on - strand, within H281DRAFT_01194at 31.194 kb on - strand, within H281DRAFT_01194at 31.398 kb on - strand, within H281DRAFT_01194at 31.445 kb on + strand, within H281DRAFT_01194at 31.915 kb on + strandat 31.917 kb on + strandat 31.917 kb on + strandat 31.917 kb on + strandat 31.917 kb on + strandat 31.918 kb on - strandat 31.918 kb on - strandat 31.978 kb on + strandat 32.149 kb on - strandat 32.170 kb on - strandat 32.170 kb on - strandat 32.271 kb on + strand, within H281DRAFT_01195at 32.271 kb on + strand, within H281DRAFT_01195at 32.434 kb on + strand, within H281DRAFT_01195at 32.437 kb on + strand, within H281DRAFT_01195at 32.438 kb on - strand, within H281DRAFT_01195at 32.541 kb on + strand, within H281DRAFT_01195at 32.541 kb on + strand, within H281DRAFT_01195at 32.643 kb on + strand, within H281DRAFT_01195at 32.655 kb on + strand, within H281DRAFT_01195at 32.655 kb on + strand, within H281DRAFT_01195at 32.655 kb on + strand, within H281DRAFT_01195at 32.655 kb on + strand, within H281DRAFT_01195at 32.656 kb on - strand, within H281DRAFT_01195at 32.656 kb on - strand, within H281DRAFT_01195at 32.989 kb on - strandat 33.113 kb on + strandat 33.191 kb on + strandat 33.216 kb on + strandat 33.216 kb on + strandat 33.217 kb on - strandat 33.217 kb on - strandat 33.217 kb on - strandat 33.221 kb on - strandat 33.246 kb on - strandat 33.381 kb on + strandat 33.382 kb on - strandat 33.391 kb on + strandat 33.392 kb on - strandat 33.515 kb on - strandat 33.901 kb on + strand, within H281DRAFT_01196at 33.901 kb on + strand, within H281DRAFT_01196at 33.920 kb on - strand, within H281DRAFT_01196

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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31,119 - +0.1
31,119 - H281DRAFT_01194 0.40 +0.5
31,194 - H281DRAFT_01194 0.47 +0.1
31,194 - H281DRAFT_01194 0.47 +0.2
31,398 - H281DRAFT_01194 0.64 +0.4
31,445 + H281DRAFT_01194 0.69 -0.0
31,915 + -0.1
31,917 + -0.3
31,917 + -0.0
31,917 + +0.0
31,917 + +0.1
31,918 - -0.2
31,918 - -0.8
31,978 + +1.6
32,149 - +0.6
32,170 - -0.2
32,170 - -0.2
32,271 + H281DRAFT_01195 0.16 -0.7
32,271 + H281DRAFT_01195 0.16 -0.8
32,434 + H281DRAFT_01195 0.34 -0.0
32,437 + H281DRAFT_01195 0.34 +0.8
32,438 - H281DRAFT_01195 0.34 -0.7
32,541 + H281DRAFT_01195 0.45 +0.1
32,541 + H281DRAFT_01195 0.45 +0.1
32,643 + H281DRAFT_01195 0.56 -0.6
32,655 + H281DRAFT_01195 0.57 +0.3
32,655 + H281DRAFT_01195 0.57 +0.1
32,655 + H281DRAFT_01195 0.57 +1.3
32,655 + H281DRAFT_01195 0.57 +0.2
32,656 - H281DRAFT_01195 0.57 -0.6
32,656 - H281DRAFT_01195 0.57 +1.9
32,989 - -0.0
33,113 + -0.4
33,191 + +0.6
33,216 + +0.8
33,216 + +0.6
33,217 - -0.5
33,217 - +0.1
33,217 - -0.7
33,221 - +0.0
33,246 - -0.4
33,381 + +0.1
33,382 - +0.1
33,391 + -0.5
33,392 - -0.6
33,515 - -0.7
33,901 + H281DRAFT_01196 0.53 +0.4
33,901 + H281DRAFT_01196 0.53 -1.0
33,920 - H281DRAFT_01196 0.55 +0.8

Or see this region's nucleotide sequence