Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01135

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01134 and H281DRAFT_01135 are separated by 48 nucleotidesH281DRAFT_01135 and H281DRAFT_01136 are separated by 79 nucleotides H281DRAFT_01134: H281DRAFT_01134 - transcriptional regulator, LysR family, at 1,279,566 to 1,280,477 _01134 H281DRAFT_01135: H281DRAFT_01135 - Sugar phosphate permease, at 1,280,526 to 1,281,911 _01135 H281DRAFT_01136: H281DRAFT_01136 - 5-(hydroxymethyl)furfural/furfural oxidase, at 1,281,991 to 1,283,739 _01136 Position (kb) 1280 1281 1282Strain fitness (log2 ratio) -1 0 1at 1279.539 kb on + strandat 1279.540 kb on - strandat 1279.587 kb on + strandat 1280.207 kb on - strand, within H281DRAFT_01134at 1280.825 kb on - strand, within H281DRAFT_01135at 1281.445 kb on + strand, within H281DRAFT_01135at 1281.477 kb on - strand, within H281DRAFT_01135at 1281.843 kb on + strandat 1281.844 kb on - strandat 1282.718 kb on + strand, within H281DRAFT_01136

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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1,279,539 + +0.3
1,279,540 - -0.1
1,279,587 + -0.2
1,280,207 - H281DRAFT_01134 0.70 +0.4
1,280,825 - H281DRAFT_01135 0.22 -0.6
1,281,445 + H281DRAFT_01135 0.66 -0.3
1,281,477 - H281DRAFT_01135 0.69 +0.3
1,281,843 + +0.5
1,281,844 - -0.5
1,282,718 + H281DRAFT_01136 0.42 +0.1

Or see this region's nucleotide sequence