Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01069

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01067 and H281DRAFT_01068 overlap by 4 nucleotidesH281DRAFT_01068 and H281DRAFT_01069 are separated by 10 nucleotidesH281DRAFT_01069 and H281DRAFT_01070 are separated by 336 nucleotides H281DRAFT_01067: H281DRAFT_01067 - NitT/TauT family transport system ATP-binding protein, at 1,198,616 to 1,199,440 _01067 H281DRAFT_01068: H281DRAFT_01068 - NitT/TauT family transport system permease protein, at 1,199,437 to 1,200,285 _01068 H281DRAFT_01069: H281DRAFT_01069 - Cytosine/adenosine deaminase, at 1,200,296 to 1,201,720 _01069 H281DRAFT_01070: H281DRAFT_01070 - methyl-accepting chemotaxis sensory transducer with Cache sensor, at 1,202,057 to 1,203,943 _01070 Position (kb) 1200 1201 1202Strain fitness (log2 ratio) -1 0 1at 1199.558 kb on + strand, within H281DRAFT_01068at 1199.911 kb on - strand, within H281DRAFT_01068at 1200.683 kb on + strand, within H281DRAFT_01069at 1200.845 kb on + strand, within H281DRAFT_01069at 1201.719 kb on - strandat 1201.790 kb on + strandat 1201.791 kb on - strandat 1202.016 kb on + strandat 1202.315 kb on + strand, within H281DRAFT_01070at 1202.489 kb on + strand, within H281DRAFT_01070

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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1,199,558 + H281DRAFT_01068 0.14 +0.7
1,199,911 - H281DRAFT_01068 0.56 +0.1
1,200,683 + H281DRAFT_01069 0.27 +1.1
1,200,845 + H281DRAFT_01069 0.39 +0.5
1,201,719 - -0.6
1,201,790 + -0.2
1,201,791 - -0.2
1,202,016 + +0.1
1,202,315 + H281DRAFT_01070 0.14 -0.2
1,202,489 + H281DRAFT_01070 0.23 -0.3

Or see this region's nucleotide sequence