Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00922

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00920 and H281DRAFT_00921 are separated by 228 nucleotidesH281DRAFT_00921 and H281DRAFT_00922 are separated by 138 nucleotidesH281DRAFT_00922 and H281DRAFT_00923 are separated by 97 nucleotides H281DRAFT_00920: H281DRAFT_00920 - transcriptional regulator, GntR family, at 1,023,457 to 1,024,980 _00920 H281DRAFT_00921: H281DRAFT_00921 - uncharacterized domain 1-containing protein, at 1,025,209 to 1,025,694 _00921 H281DRAFT_00922: H281DRAFT_00922 - hypothetical protein, at 1,025,833 to 1,026,831 _00922 H281DRAFT_00923: H281DRAFT_00923 - NADP-dependent 3-hydroxy acid dehydrogenase YdfG, at 1,026,929 to 1,027,822 _00923 Position (kb) 1025 1026 1027Strain fitness (log2 ratio) -1 0 1at 1025.095 kb on - strandat 1025.101 kb on + strandat 1025.343 kb on + strand, within H281DRAFT_00921at 1025.343 kb on + strand, within H281DRAFT_00921at 1025.344 kb on - strand, within H281DRAFT_00921at 1025.344 kb on - strand, within H281DRAFT_00921at 1025.375 kb on + strand, within H281DRAFT_00921at 1025.605 kb on + strand, within H281DRAFT_00921at 1025.682 kb on + strandat 1025.759 kb on + strandat 1025.819 kb on - strandat 1025.956 kb on - strand, within H281DRAFT_00922at 1025.962 kb on + strand, within H281DRAFT_00922at 1025.963 kb on - strand, within H281DRAFT_00922at 1025.963 kb on - strand, within H281DRAFT_00922at 1025.980 kb on + strand, within H281DRAFT_00922at 1025.981 kb on - strand, within H281DRAFT_00922at 1025.981 kb on - strand, within H281DRAFT_00922at 1026.014 kb on - strand, within H281DRAFT_00922at 1026.137 kb on - strand, within H281DRAFT_00922at 1026.199 kb on + strand, within H281DRAFT_00922at 1026.388 kb on + strand, within H281DRAFT_00922at 1026.427 kb on + strand, within H281DRAFT_00922at 1026.446 kb on - strand, within H281DRAFT_00922at 1026.568 kb on + strand, within H281DRAFT_00922at 1026.868 kb on - strandat 1027.072 kb on + strand, within H281DRAFT_00923at 1027.196 kb on - strand, within H281DRAFT_00923at 1027.257 kb on + strand, within H281DRAFT_00923at 1027.272 kb on + strand, within H281DRAFT_00923at 1027.272 kb on + strand, within H281DRAFT_00923at 1027.339 kb on + strand, within H281DRAFT_00923at 1027.394 kb on + strand, within H281DRAFT_00923at 1027.395 kb on - strand, within H281DRAFT_00923at 1027.439 kb on + strand, within H281DRAFT_00923at 1027.439 kb on + strand, within H281DRAFT_00923at 1027.697 kb on + strand, within H281DRAFT_00923at 1027.697 kb on + strand, within H281DRAFT_00923at 1027.698 kb on - strand, within H281DRAFT_00923at 1027.698 kb on - strand, within H281DRAFT_00923at 1027.698 kb on - strand, within H281DRAFT_00923at 1027.698 kb on - strand, within H281DRAFT_00923

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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1,025,095 - +0.7
1,025,101 + -0.8
1,025,343 + H281DRAFT_00921 0.28 -0.0
1,025,343 + H281DRAFT_00921 0.28 +0.3
1,025,344 - H281DRAFT_00921 0.28 -0.2
1,025,344 - H281DRAFT_00921 0.28 -0.1
1,025,375 + H281DRAFT_00921 0.34 +0.6
1,025,605 + H281DRAFT_00921 0.81 +0.7
1,025,682 + +0.0
1,025,759 + -0.3
1,025,819 - -0.3
1,025,956 - H281DRAFT_00922 0.12 +0.2
1,025,962 + H281DRAFT_00922 0.13 +0.4
1,025,963 - H281DRAFT_00922 0.13 +0.2
1,025,963 - H281DRAFT_00922 0.13 +0.5
1,025,980 + H281DRAFT_00922 0.15 -0.2
1,025,981 - H281DRAFT_00922 0.15 +0.2
1,025,981 - H281DRAFT_00922 0.15 +0.6
1,026,014 - H281DRAFT_00922 0.18 +1.0
1,026,137 - H281DRAFT_00922 0.30 -0.2
1,026,199 + H281DRAFT_00922 0.37 +0.1
1,026,388 + H281DRAFT_00922 0.56 +0.8
1,026,427 + H281DRAFT_00922 0.59 -0.1
1,026,446 - H281DRAFT_00922 0.61 +0.8
1,026,568 + H281DRAFT_00922 0.74 +0.8
1,026,868 - -0.5
1,027,072 + H281DRAFT_00923 0.16 +1.1
1,027,196 - H281DRAFT_00923 0.30 -0.8
1,027,257 + H281DRAFT_00923 0.37 -0.4
1,027,272 + H281DRAFT_00923 0.38 -0.2
1,027,272 + H281DRAFT_00923 0.38 -1.3
1,027,339 + H281DRAFT_00923 0.46 -0.7
1,027,394 + H281DRAFT_00923 0.52 +0.5
1,027,395 - H281DRAFT_00923 0.52 +0.3
1,027,439 + H281DRAFT_00923 0.57 -0.4
1,027,439 + H281DRAFT_00923 0.57 +0.0
1,027,697 + H281DRAFT_00923 0.86 -0.1
1,027,697 + H281DRAFT_00923 0.86 +0.9
1,027,698 - H281DRAFT_00923 0.86 +0.9
1,027,698 - H281DRAFT_00923 0.86 -0.1
1,027,698 - H281DRAFT_00923 0.86 +0.1
1,027,698 - H281DRAFT_00923 0.86 -0.2

Or see this region's nucleotide sequence