Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00911

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00909 and H281DRAFT_00910 are separated by 164 nucleotidesH281DRAFT_00910 and H281DRAFT_00911 are separated by 10 nucleotidesH281DRAFT_00911 and H281DRAFT_00912 are separated by 1 nucleotidesH281DRAFT_00912 and H281DRAFT_00913 are separated by 388 nucleotides H281DRAFT_00909: H281DRAFT_00909 - phosphoribosylformylglycinamidine synthase, at 1,008,216 to 1,012,487 _00909 H281DRAFT_00910: H281DRAFT_00910 - peptidyl-prolyl cis-trans isomerase C, at 1,012,652 to 1,013,431 _00910 H281DRAFT_00911: H281DRAFT_00911 - transcriptional regulator, BolA protein family, at 1,013,442 to 1,013,753 _00911 H281DRAFT_00912: H281DRAFT_00912 - intracellular septation protein, at 1,013,755 to 1,014,285 _00912 H281DRAFT_00913: H281DRAFT_00913 - peptide-methionine (R)-S-oxide reductase, at 1,014,674 to 1,015,096 _00913 Position (kb) 1013 1014Strain fitness (log2 ratio) -1 0 1at 1012.625 kb on - strandat 1012.647 kb on - strandat 1012.654 kb on - strandat 1012.875 kb on + strand, within H281DRAFT_00910at 1012.875 kb on + strand, within H281DRAFT_00910at 1012.875 kb on + strand, within H281DRAFT_00910at 1012.875 kb on + strand, within H281DRAFT_00910at 1012.875 kb on + strand, within H281DRAFT_00910at 1012.876 kb on - strand, within H281DRAFT_00910at 1012.876 kb on - strand, within H281DRAFT_00910at 1012.876 kb on - strand, within H281DRAFT_00910at 1012.876 kb on - strand, within H281DRAFT_00910at 1013.038 kb on - strand, within H281DRAFT_00910at 1013.477 kb on - strand, within H281DRAFT_00911at 1013.477 kb on - strand, within H281DRAFT_00911at 1013.534 kb on - strand, within H281DRAFT_00911at 1013.691 kb on - strand, within H281DRAFT_00911at 1013.744 kb on + strandat 1013.771 kb on + strandat 1014.692 kb on + strandat 1014.692 kb on + strandat 1014.692 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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1,012,625 - +0.1
1,012,647 - +0.2
1,012,654 - +0.6
1,012,875 + H281DRAFT_00910 0.29 +0.1
1,012,875 + H281DRAFT_00910 0.29 +0.5
1,012,875 + H281DRAFT_00910 0.29 -0.8
1,012,875 + H281DRAFT_00910 0.29 -1.0
1,012,875 + H281DRAFT_00910 0.29 -0.5
1,012,876 - H281DRAFT_00910 0.29 -0.3
1,012,876 - H281DRAFT_00910 0.29 +0.8
1,012,876 - H281DRAFT_00910 0.29 +1.0
1,012,876 - H281DRAFT_00910 0.29 -1.5
1,013,038 - H281DRAFT_00910 0.49 -0.0
1,013,477 - H281DRAFT_00911 0.11 +0.7
1,013,477 - H281DRAFT_00911 0.11 +0.3
1,013,534 - H281DRAFT_00911 0.29 +0.5
1,013,691 - H281DRAFT_00911 0.80 +0.1
1,013,744 + +0.5
1,013,771 + +0.8
1,014,692 + +0.5
1,014,692 + +0.2
1,014,692 + +0.3

Or see this region's nucleotide sequence