Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00307

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00306 and H281DRAFT_00307 are separated by 60 nucleotidesH281DRAFT_00307 and H281DRAFT_00308 are separated by 349 nucleotides H281DRAFT_00306: H281DRAFT_00306 - acetolactate synthase-1/2/3 large subunit, at 328,922 to 330,574 _00306 H281DRAFT_00307: H281DRAFT_00307 - Acyl-CoA reductase, at 330,635 to 332,071 _00307 H281DRAFT_00308: H281DRAFT_00308 - Superfamily II DNA and RNA helicase, at 332,421 to 333,881 _00308 Position (kb) 330 331 332 333Strain fitness (log2 ratio) -1 0 1at 329.647 kb on + strand, within H281DRAFT_00306at 329.648 kb on - strand, within H281DRAFT_00306at 329.648 kb on - strand, within H281DRAFT_00306at 329.835 kb on - strand, within H281DRAFT_00306at 329.886 kb on + strand, within H281DRAFT_00306at 329.886 kb on + strand, within H281DRAFT_00306at 330.029 kb on + strand, within H281DRAFT_00306at 330.030 kb on - strand, within H281DRAFT_00306at 330.411 kb on - strandat 330.516 kb on - strandat 330.615 kb on + strandat 330.616 kb on - strandat 330.650 kb on + strandat 330.657 kb on - strandat 330.659 kb on + strandat 330.660 kb on - strandat 331.046 kb on + strand, within H281DRAFT_00307at 331.436 kb on + strand, within H281DRAFT_00307at 331.436 kb on + strand, within H281DRAFT_00307at 331.436 kb on + strand, within H281DRAFT_00307at 331.437 kb on - strand, within H281DRAFT_00307at 331.437 kb on - strand, within H281DRAFT_00307at 331.437 kb on - strand, within H281DRAFT_00307at 331.469 kb on + strand, within H281DRAFT_00307at 331.469 kb on + strand, within H281DRAFT_00307at 331.470 kb on - strand, within H281DRAFT_00307at 331.526 kb on + strand, within H281DRAFT_00307at 331.526 kb on + strand, within H281DRAFT_00307at 331.526 kb on + strand, within H281DRAFT_00307at 331.527 kb on - strand, within H281DRAFT_00307at 331.527 kb on - strand, within H281DRAFT_00307at 331.527 kb on - strand, within H281DRAFT_00307at 331.741 kb on + strand, within H281DRAFT_00307at 331.961 kb on - strandat 332.015 kb on + strandat 332.015 kb on + strandat 332.016 kb on - strandat 332.139 kb on + strandat 332.203 kb on - strandat 332.511 kb on + strandat 332.748 kb on + strandat 332.749 kb on - strand, within H281DRAFT_00308at 332.749 kb on - strand, within H281DRAFT_00308at 332.749 kb on - strand, within H281DRAFT_00308at 333.057 kb on + strand, within H281DRAFT_00308at 333.058 kb on - strand, within H281DRAFT_00308at 333.058 kb on - strand, within H281DRAFT_00308at 333.058 kb on - strand, within H281DRAFT_00308

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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329,647 + H281DRAFT_00306 0.44 -0.4
329,648 - H281DRAFT_00306 0.44 +1.0
329,648 - H281DRAFT_00306 0.44 -0.1
329,835 - H281DRAFT_00306 0.55 +0.3
329,886 + H281DRAFT_00306 0.58 -0.1
329,886 + H281DRAFT_00306 0.58 +0.1
330,029 + H281DRAFT_00306 0.67 -0.9
330,030 - H281DRAFT_00306 0.67 +0.4
330,411 - -0.2
330,516 - -0.3
330,615 + -1.6
330,616 - -0.0
330,650 + +0.1
330,657 - +0.1
330,659 + -0.6
330,660 - +0.3
331,046 + H281DRAFT_00307 0.29 -0.1
331,436 + H281DRAFT_00307 0.56 -0.2
331,436 + H281DRAFT_00307 0.56 -0.3
331,436 + H281DRAFT_00307 0.56 -0.0
331,437 - H281DRAFT_00307 0.56 +0.2
331,437 - H281DRAFT_00307 0.56 +0.8
331,437 - H281DRAFT_00307 0.56 +0.4
331,469 + H281DRAFT_00307 0.58 -0.2
331,469 + H281DRAFT_00307 0.58 +0.5
331,470 - H281DRAFT_00307 0.58 -1.5
331,526 + H281DRAFT_00307 0.62 +1.0
331,526 + H281DRAFT_00307 0.62 -0.2
331,526 + H281DRAFT_00307 0.62 -1.2
331,527 - H281DRAFT_00307 0.62 +0.0
331,527 - H281DRAFT_00307 0.62 -0.1
331,527 - H281DRAFT_00307 0.62 +0.1
331,741 + H281DRAFT_00307 0.77 -0.4
331,961 - -0.7
332,015 + +0.1
332,015 + +0.1
332,016 - +0.8
332,139 + +0.2
332,203 - -0.1
332,511 + -0.5
332,748 + +0.5
332,749 - H281DRAFT_00308 0.22 -0.4
332,749 - H281DRAFT_00308 0.22 -0.3
332,749 - H281DRAFT_00308 0.22 -0.5
333,057 + H281DRAFT_00308 0.44 -0.2
333,058 - H281DRAFT_00308 0.44 +0.1
333,058 - H281DRAFT_00308 0.44 -1.2
333,058 - H281DRAFT_00308 0.44 +0.5

Or see this region's nucleotide sequence