Experiment: D-Salicin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03760 and CCNA_03761 overlap by 4 nucleotides CCNA_03761 and CCNA_03762 are separated by 215 nucleotides CCNA_03762 and CCNA_03763 are separated by 81 nucleotides
CCNA_03760: CCNA_03760 - PaaI-family thioesterase, at 3,930,450 to 3,930,950
_03760
CCNA_03761: CCNA_03761 - PaaI-family thioesterase, at 3,930,947 to 3,931,366
_03761
CCNA_03762: CCNA_03762 - acetolactate synthase-related protein, at 3,931,582 to 3,931,680
_03762
CCNA_03763: CCNA_03763 - deacetylase, at 3,931,762 to 3,932,676
_03763
Position (kb)
3931
3932 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 3930.584 kb on + strand, within CCNA_03760 at 3930.624 kb on + strand, within CCNA_03760 at 3930.627 kb on + strand, within CCNA_03760 at 3930.670 kb on - strand, within CCNA_03760 at 3930.690 kb on - strand, within CCNA_03760 at 3930.717 kb on + strand, within CCNA_03760 at 3930.718 kb on + strand at 3930.750 kb on - strand, within CCNA_03760 at 3930.769 kb on + strand, within CCNA_03760 at 3930.774 kb on + strand, within CCNA_03760 at 3930.777 kb on - strand, within CCNA_03760 at 3930.782 kb on - strand, within CCNA_03760 at 3930.846 kb on + strand, within CCNA_03760 at 3930.846 kb on + strand, within CCNA_03760 at 3930.866 kb on + strand, within CCNA_03760 at 3930.876 kb on - strand, within CCNA_03760 at 3930.876 kb on - strand, within CCNA_03760 at 3930.887 kb on + strand, within CCNA_03760 at 3930.895 kb on - strand, within CCNA_03760 at 3930.908 kb on - strand at 3930.937 kb on + strand at 3930.977 kb on + strand at 3931.017 kb on + strand, within CCNA_03761 at 3931.020 kb on - strand, within CCNA_03761 at 3931.025 kb on - strand, within CCNA_03761 at 3931.069 kb on - strand, within CCNA_03761 at 3931.129 kb on + strand, within CCNA_03761 at 3931.141 kb on + strand, within CCNA_03761 at 3931.150 kb on - strand, within CCNA_03761 at 3931.207 kb on + strand, within CCNA_03761 at 3931.221 kb on - strand, within CCNA_03761 at 3931.240 kb on - strand, within CCNA_03761 at 3931.293 kb on - strand, within CCNA_03761 at 3931.339 kb on + strand at 3931.339 kb on + strand at 3931.347 kb on - strand at 3931.361 kb on + strand at 3931.361 kb on + strand at 3931.369 kb on - strand at 3931.369 kb on - strand at 3931.398 kb on - strand at 3931.520 kb on - strand at 3931.524 kb on + strand at 3931.524 kb on + strand at 3931.532 kb on - strand at 3931.532 kb on - strand at 3931.593 kb on + strand, within CCNA_03762 at 3931.593 kb on + strand, within CCNA_03762 at 3931.667 kb on + strand, within CCNA_03762 at 3931.675 kb on - strand at 3931.721 kb on + strand at 3931.893 kb on + strand, within CCNA_03763 at 3931.901 kb on - strand, within CCNA_03763 at 3931.902 kb on - strand, within CCNA_03763 at 3931.903 kb on - strand, within CCNA_03763 at 3931.935 kb on - strand, within CCNA_03763 at 3931.946 kb on + strand, within CCNA_03763 at 3931.954 kb on - strand, within CCNA_03763 at 3931.954 kb on - strand, within CCNA_03763 at 3932.011 kb on - strand, within CCNA_03763 at 3932.031 kb on + strand, within CCNA_03763 at 3932.107 kb on - strand, within CCNA_03763 at 3932.140 kb on + strand, within CCNA_03763 at 3932.148 kb on - strand, within CCNA_03763 at 3932.175 kb on - strand, within CCNA_03763 at 3932.175 kb on - strand, within CCNA_03763 at 3932.204 kb on - strand, within CCNA_03763 at 3932.371 kb on - strand, within CCNA_03763 at 3932.425 kb on - strand, within CCNA_03763 at 3932.474 kb on - strand, within CCNA_03763 at 3932.474 kb on - strand, within CCNA_03763 at 3932.506 kb on - strand, within CCNA_03763 at 3932.525 kb on + strand, within CCNA_03763 at 3932.525 kb on + strand, within CCNA_03763 at 3932.533 kb on - strand, within CCNA_03763 at 3932.533 kb on - strand, within CCNA_03763 at 3932.535 kb on + strand, within CCNA_03763 at 3932.535 kb on + strand, within CCNA_03763 at 3932.575 kb on - strand, within CCNA_03763 at 3932.575 kb on - strand, within CCNA_03763 at 3932.575 kb on - strand, within CCNA_03763 at 3932.575 kb on - strand, within CCNA_03763 at 3932.579 kb on - strand, within CCNA_03763 at 3932.640 kb on + strand at 3932.679 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Salicin (C) remove 3,930,584 + CCNA_03760 0.27 +1.1 3,930,624 + CCNA_03760 0.35 -0.5 3,930,627 + CCNA_03760 0.35 +1.2 3,930,670 - CCNA_03760 0.44 +0.3 3,930,690 - CCNA_03760 0.48 -1.1 3,930,717 + CCNA_03760 0.53 +0.8 3,930,718 + +4.3 3,930,750 - CCNA_03760 0.60 -0.8 3,930,769 + CCNA_03760 0.64 -0.5 3,930,774 + CCNA_03760 0.65 +0.7 3,930,777 - CCNA_03760 0.65 -0.7 3,930,782 - CCNA_03760 0.66 -0.1 3,930,846 + CCNA_03760 0.79 +1.2 3,930,846 + CCNA_03760 0.79 +0.4 3,930,866 + CCNA_03760 0.83 +0.5 3,930,876 - CCNA_03760 0.85 +0.8 3,930,876 - CCNA_03760 0.85 +0.6 3,930,887 + CCNA_03760 0.87 -0.2 3,930,895 - CCNA_03760 0.89 +0.6 3,930,908 - -1.4 3,930,937 + +1.2 3,930,977 + +0.5 3,931,017 + CCNA_03761 0.17 +3.1 3,931,020 - CCNA_03761 0.17 -1.1 3,931,025 - CCNA_03761 0.19 -0.9 3,931,069 - CCNA_03761 0.29 -1.6 3,931,129 + CCNA_03761 0.43 +1.8 3,931,141 + CCNA_03761 0.46 +0.4 3,931,150 - CCNA_03761 0.48 -0.2 3,931,207 + CCNA_03761 0.62 +1.2 3,931,221 - CCNA_03761 0.65 -0.5 3,931,240 - CCNA_03761 0.70 -0.9 3,931,293 - CCNA_03761 0.82 +0.7 3,931,339 + +0.4 3,931,339 + +0.2 3,931,347 - +1.4 3,931,361 + +1.1 3,931,361 + +2.8 3,931,369 - -1.5 3,931,369 - +0.7 3,931,398 - -1.3 3,931,520 - -1.7 3,931,524 + +1.1 3,931,524 + +1.0 3,931,532 - +1.0 3,931,532 - -0.7 3,931,593 + CCNA_03762 0.11 +2.3 3,931,593 + CCNA_03762 0.11 +2.3 3,931,667 + CCNA_03762 0.86 +1.6 3,931,675 - +1.3 3,931,721 + +1.5 3,931,893 + CCNA_03763 0.14 +0.6 3,931,901 - CCNA_03763 0.15 +1.0 3,931,902 - CCNA_03763 0.15 -0.8 3,931,903 - CCNA_03763 0.15 +0.0 3,931,935 - CCNA_03763 0.19 +1.4 3,931,946 + CCNA_03763 0.20 -0.5 3,931,954 - CCNA_03763 0.21 +0.2 3,931,954 - CCNA_03763 0.21 +0.6 3,932,011 - CCNA_03763 0.27 +0.5 3,932,031 + CCNA_03763 0.29 -0.1 3,932,107 - CCNA_03763 0.38 +0.1 3,932,140 + CCNA_03763 0.41 -0.1 3,932,148 - CCNA_03763 0.42 +0.2 3,932,175 - CCNA_03763 0.45 +0.1 3,932,175 - CCNA_03763 0.45 +0.7 3,932,204 - CCNA_03763 0.48 -1.7 3,932,371 - CCNA_03763 0.67 -0.3 3,932,425 - CCNA_03763 0.72 +0.1 3,932,474 - CCNA_03763 0.78 -0.9 3,932,474 - CCNA_03763 0.78 +0.9 3,932,506 - CCNA_03763 0.81 +0.1 3,932,525 + CCNA_03763 0.83 -0.7 3,932,525 + CCNA_03763 0.83 -0.1 3,932,533 - CCNA_03763 0.84 +1.1 3,932,533 - CCNA_03763 0.84 -0.3 3,932,535 + CCNA_03763 0.84 +0.5 3,932,535 + CCNA_03763 0.84 +0.4 3,932,575 - CCNA_03763 0.89 -0.8 3,932,575 - CCNA_03763 0.89 +0.4 3,932,575 - CCNA_03763 0.89 -0.3 3,932,575 - CCNA_03763 0.89 +0.4 3,932,579 - CCNA_03763 0.89 +0.1 3,932,640 + -1.6 3,932,679 - +1.4
Or see this region's nucleotide sequence