Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03762

Experiment: D-Salicin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03760 and CCNA_03761 overlap by 4 nucleotidesCCNA_03761 and CCNA_03762 are separated by 215 nucleotidesCCNA_03762 and CCNA_03763 are separated by 81 nucleotides CCNA_03760: CCNA_03760 - PaaI-family thioesterase, at 3,930,450 to 3,930,950 _03760 CCNA_03761: CCNA_03761 - PaaI-family thioesterase, at 3,930,947 to 3,931,366 _03761 CCNA_03762: CCNA_03762 - acetolactate synthase-related protein, at 3,931,582 to 3,931,680 _03762 CCNA_03763: CCNA_03763 - deacetylase, at 3,931,762 to 3,932,676 _03763 Position (kb) 3931 3932Strain fitness (log2 ratio) -1 0 1 2 3 4at 3930.584 kb on + strand, within CCNA_03760at 3930.624 kb on + strand, within CCNA_03760at 3930.627 kb on + strand, within CCNA_03760at 3930.670 kb on - strand, within CCNA_03760at 3930.690 kb on - strand, within CCNA_03760at 3930.717 kb on + strand, within CCNA_03760at 3930.718 kb on + strandat 3930.750 kb on - strand, within CCNA_03760at 3930.769 kb on + strand, within CCNA_03760at 3930.774 kb on + strand, within CCNA_03760at 3930.777 kb on - strand, within CCNA_03760at 3930.782 kb on - strand, within CCNA_03760at 3930.846 kb on + strand, within CCNA_03760at 3930.846 kb on + strand, within CCNA_03760at 3930.866 kb on + strand, within CCNA_03760at 3930.876 kb on - strand, within CCNA_03760at 3930.876 kb on - strand, within CCNA_03760at 3930.887 kb on + strand, within CCNA_03760at 3930.895 kb on - strand, within CCNA_03760at 3930.908 kb on - strandat 3930.937 kb on + strandat 3930.977 kb on + strandat 3931.017 kb on + strand, within CCNA_03761at 3931.020 kb on - strand, within CCNA_03761at 3931.025 kb on - strand, within CCNA_03761at 3931.069 kb on - strand, within CCNA_03761at 3931.129 kb on + strand, within CCNA_03761at 3931.141 kb on + strand, within CCNA_03761at 3931.150 kb on - strand, within CCNA_03761at 3931.207 kb on + strand, within CCNA_03761at 3931.221 kb on - strand, within CCNA_03761at 3931.240 kb on - strand, within CCNA_03761at 3931.293 kb on - strand, within CCNA_03761at 3931.339 kb on + strandat 3931.339 kb on + strandat 3931.347 kb on - strandat 3931.361 kb on + strandat 3931.361 kb on + strandat 3931.369 kb on - strandat 3931.369 kb on - strandat 3931.398 kb on - strandat 3931.520 kb on - strandat 3931.524 kb on + strandat 3931.524 kb on + strandat 3931.532 kb on - strandat 3931.532 kb on - strandat 3931.593 kb on + strand, within CCNA_03762at 3931.593 kb on + strand, within CCNA_03762at 3931.667 kb on + strand, within CCNA_03762at 3931.675 kb on - strandat 3931.721 kb on + strandat 3931.893 kb on + strand, within CCNA_03763at 3931.901 kb on - strand, within CCNA_03763at 3931.902 kb on - strand, within CCNA_03763at 3931.903 kb on - strand, within CCNA_03763at 3931.935 kb on - strand, within CCNA_03763at 3931.946 kb on + strand, within CCNA_03763at 3931.954 kb on - strand, within CCNA_03763at 3931.954 kb on - strand, within CCNA_03763at 3932.011 kb on - strand, within CCNA_03763at 3932.031 kb on + strand, within CCNA_03763at 3932.107 kb on - strand, within CCNA_03763at 3932.140 kb on + strand, within CCNA_03763at 3932.148 kb on - strand, within CCNA_03763at 3932.175 kb on - strand, within CCNA_03763at 3932.175 kb on - strand, within CCNA_03763at 3932.204 kb on - strand, within CCNA_03763at 3932.371 kb on - strand, within CCNA_03763at 3932.425 kb on - strand, within CCNA_03763at 3932.474 kb on - strand, within CCNA_03763at 3932.474 kb on - strand, within CCNA_03763at 3932.506 kb on - strand, within CCNA_03763at 3932.525 kb on + strand, within CCNA_03763at 3932.525 kb on + strand, within CCNA_03763at 3932.533 kb on - strand, within CCNA_03763at 3932.533 kb on - strand, within CCNA_03763at 3932.535 kb on + strand, within CCNA_03763at 3932.535 kb on + strand, within CCNA_03763at 3932.575 kb on - strand, within CCNA_03763at 3932.575 kb on - strand, within CCNA_03763at 3932.575 kb on - strand, within CCNA_03763at 3932.575 kb on - strand, within CCNA_03763at 3932.579 kb on - strand, within CCNA_03763at 3932.640 kb on + strandat 3932.679 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Salicin (C)
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3,930,584 + CCNA_03760 0.27 +1.1
3,930,624 + CCNA_03760 0.35 -0.5
3,930,627 + CCNA_03760 0.35 +1.2
3,930,670 - CCNA_03760 0.44 +0.3
3,930,690 - CCNA_03760 0.48 -1.1
3,930,717 + CCNA_03760 0.53 +0.8
3,930,718 + +4.3
3,930,750 - CCNA_03760 0.60 -0.8
3,930,769 + CCNA_03760 0.64 -0.5
3,930,774 + CCNA_03760 0.65 +0.7
3,930,777 - CCNA_03760 0.65 -0.7
3,930,782 - CCNA_03760 0.66 -0.1
3,930,846 + CCNA_03760 0.79 +1.2
3,930,846 + CCNA_03760 0.79 +0.4
3,930,866 + CCNA_03760 0.83 +0.5
3,930,876 - CCNA_03760 0.85 +0.8
3,930,876 - CCNA_03760 0.85 +0.6
3,930,887 + CCNA_03760 0.87 -0.2
3,930,895 - CCNA_03760 0.89 +0.6
3,930,908 - -1.4
3,930,937 + +1.2
3,930,977 + +0.5
3,931,017 + CCNA_03761 0.17 +3.1
3,931,020 - CCNA_03761 0.17 -1.1
3,931,025 - CCNA_03761 0.19 -0.9
3,931,069 - CCNA_03761 0.29 -1.6
3,931,129 + CCNA_03761 0.43 +1.8
3,931,141 + CCNA_03761 0.46 +0.4
3,931,150 - CCNA_03761 0.48 -0.2
3,931,207 + CCNA_03761 0.62 +1.2
3,931,221 - CCNA_03761 0.65 -0.5
3,931,240 - CCNA_03761 0.70 -0.9
3,931,293 - CCNA_03761 0.82 +0.7
3,931,339 + +0.4
3,931,339 + +0.2
3,931,347 - +1.4
3,931,361 + +1.1
3,931,361 + +2.8
3,931,369 - -1.5
3,931,369 - +0.7
3,931,398 - -1.3
3,931,520 - -1.7
3,931,524 + +1.1
3,931,524 + +1.0
3,931,532 - +1.0
3,931,532 - -0.7
3,931,593 + CCNA_03762 0.11 +2.3
3,931,593 + CCNA_03762 0.11 +2.3
3,931,667 + CCNA_03762 0.86 +1.6
3,931,675 - +1.3
3,931,721 + +1.5
3,931,893 + CCNA_03763 0.14 +0.6
3,931,901 - CCNA_03763 0.15 +1.0
3,931,902 - CCNA_03763 0.15 -0.8
3,931,903 - CCNA_03763 0.15 +0.0
3,931,935 - CCNA_03763 0.19 +1.4
3,931,946 + CCNA_03763 0.20 -0.5
3,931,954 - CCNA_03763 0.21 +0.2
3,931,954 - CCNA_03763 0.21 +0.6
3,932,011 - CCNA_03763 0.27 +0.5
3,932,031 + CCNA_03763 0.29 -0.1
3,932,107 - CCNA_03763 0.38 +0.1
3,932,140 + CCNA_03763 0.41 -0.1
3,932,148 - CCNA_03763 0.42 +0.2
3,932,175 - CCNA_03763 0.45 +0.1
3,932,175 - CCNA_03763 0.45 +0.7
3,932,204 - CCNA_03763 0.48 -1.7
3,932,371 - CCNA_03763 0.67 -0.3
3,932,425 - CCNA_03763 0.72 +0.1
3,932,474 - CCNA_03763 0.78 -0.9
3,932,474 - CCNA_03763 0.78 +0.9
3,932,506 - CCNA_03763 0.81 +0.1
3,932,525 + CCNA_03763 0.83 -0.7
3,932,525 + CCNA_03763 0.83 -0.1
3,932,533 - CCNA_03763 0.84 +1.1
3,932,533 - CCNA_03763 0.84 -0.3
3,932,535 + CCNA_03763 0.84 +0.5
3,932,535 + CCNA_03763 0.84 +0.4
3,932,575 - CCNA_03763 0.89 -0.8
3,932,575 - CCNA_03763 0.89 +0.4
3,932,575 - CCNA_03763 0.89 -0.3
3,932,575 - CCNA_03763 0.89 +0.4
3,932,579 - CCNA_03763 0.89 +0.1
3,932,640 + -1.6
3,932,679 - +1.4

Or see this region's nucleotide sequence