Experiment: D-Salicin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02511 and CCNA_02512 overlap by 4 nucleotides CCNA_02512 and CCNA_02513 are separated by 42 nucleotides CCNA_02513 and CCNA_02514 are separated by 85 nucleotides CCNA_02514 and CCNA_02515 are separated by 42 nucleotides
CCNA_02511: CCNA_02511 - polysaccharide polymerase hfsC, at 2,661,300 to 2,662,568
_02511
CCNA_02512: CCNA_02512 - polysaccharide autokinase-related protein hfsB, at 2,662,565 to 2,663,266
_02512
CCNA_02513: CCNA_02513 - holdfast synthesis protein HfsA, at 2,663,309 to 2,664,847
_02513
CCNA_02514: CCNA_02514 - polysaccharide secretin protein hfsD, at 2,664,933 to 2,665,673
_02514
CCNA_02515: CCNA_02515 - TPR repeat/SEL1 family protein, at 2,665,716 to 2,665,994
_02515
Position (kb)
2663
2664
2665 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 2662.316 kb on + strand, within CCNA_02511 at 2662.361 kb on + strand, within CCNA_02511 at 2662.373 kb on + strand, within CCNA_02511 at 2662.373 kb on + strand, within CCNA_02511 at 2662.381 kb on - strand, within CCNA_02511 at 2662.381 kb on - strand, within CCNA_02511 at 2662.415 kb on - strand, within CCNA_02511 at 2662.415 kb on - strand, within CCNA_02511 at 2662.440 kb on - strand, within CCNA_02511 at 2662.440 kb on - strand, within CCNA_02511 at 2662.449 kb on + strand at 2662.519 kb on + strand at 2662.527 kb on - strand at 2662.527 kb on - strand at 2662.527 kb on - strand at 2662.527 kb on - strand at 2662.527 kb on - strand at 2662.542 kb on + strand at 2662.542 kb on + strand at 2662.550 kb on - strand at 2662.550 kb on - strand at 2662.619 kb on + strand at 2662.624 kb on + strand at 2662.629 kb on + strand at 2662.632 kb on - strand at 2662.669 kb on - strand, within CCNA_02512 at 2662.669 kb on - strand, within CCNA_02512 at 2662.672 kb on - strand, within CCNA_02512 at 2662.677 kb on - strand, within CCNA_02512 at 2662.682 kb on - strand, within CCNA_02512 at 2662.723 kb on - strand, within CCNA_02512 at 2662.753 kb on + strand, within CCNA_02512 at 2662.775 kb on + strand, within CCNA_02512 at 2662.775 kb on + strand, within CCNA_02512 at 2662.783 kb on - strand, within CCNA_02512 at 2662.797 kb on + strand, within CCNA_02512 at 2662.807 kb on + strand, within CCNA_02512 at 2662.864 kb on - strand, within CCNA_02512 at 2662.947 kb on + strand, within CCNA_02512 at 2662.953 kb on + strand, within CCNA_02512 at 2662.956 kb on - strand, within CCNA_02512 at 2663.080 kb on + strand, within CCNA_02512 at 2663.088 kb on - strand, within CCNA_02512 at 2663.088 kb on - strand, within CCNA_02512 at 2663.210 kb on - strand at 2663.229 kb on + strand at 2663.229 kb on + strand at 2663.231 kb on + strand at 2663.237 kb on - strand at 2663.237 kb on - strand at 2663.237 kb on - strand at 2663.237 kb on - strand at 2663.246 kb on - strand at 2663.314 kb on - strand at 2663.320 kb on + strand at 2663.328 kb on - strand at 2663.344 kb on + strand at 2663.372 kb on + strand at 2663.376 kb on + strand at 2663.380 kb on - strand at 2663.407 kb on + strand at 2663.434 kb on + strand at 2663.442 kb on - strand at 2663.442 kb on - strand at 2663.442 kb on - strand at 2663.482 kb on + strand, within CCNA_02513 at 2663.490 kb on - strand, within CCNA_02513 at 2663.490 kb on - strand, within CCNA_02513 at 2663.497 kb on + strand, within CCNA_02513 at 2663.497 kb on + strand, within CCNA_02513 at 2663.521 kb on - strand, within CCNA_02513 at 2663.548 kb on - strand, within CCNA_02513 at 2663.621 kb on + strand, within CCNA_02513 at 2663.627 kb on + strand, within CCNA_02513 at 2663.629 kb on - strand, within CCNA_02513 at 2663.639 kb on - strand, within CCNA_02513 at 2663.715 kb on + strand, within CCNA_02513 at 2663.729 kb on + strand, within CCNA_02513 at 2663.745 kb on - strand, within CCNA_02513 at 2663.770 kb on + strand, within CCNA_02513 at 2663.774 kb on - strand, within CCNA_02513 at 2663.789 kb on - strand, within CCNA_02513 at 2663.805 kb on - strand, within CCNA_02513 at 2663.818 kb on + strand, within CCNA_02513 at 2663.833 kb on - strand, within CCNA_02513 at 2663.856 kb on - strand, within CCNA_02513 at 2663.858 kb on + strand, within CCNA_02513 at 2663.858 kb on + strand, within CCNA_02513 at 2663.903 kb on + strand, within CCNA_02513 at 2663.936 kb on - strand, within CCNA_02513 at 2663.950 kb on - strand, within CCNA_02513 at 2663.975 kb on - strand, within CCNA_02513 at 2664.035 kb on + strand, within CCNA_02513 at 2664.035 kb on + strand, within CCNA_02513 at 2664.035 kb on + strand, within CCNA_02513 at 2664.038 kb on - strand, within CCNA_02513 at 2664.055 kb on + strand, within CCNA_02513 at 2664.066 kb on - strand, within CCNA_02513 at 2664.069 kb on + strand, within CCNA_02513 at 2664.074 kb on + strand, within CCNA_02513 at 2664.098 kb on - strand, within CCNA_02513 at 2664.121 kb on - strand, within CCNA_02513 at 2664.170 kb on + strand, within CCNA_02513 at 2664.218 kb on - strand, within CCNA_02513 at 2664.248 kb on + strand, within CCNA_02513 at 2664.248 kb on + strand, within CCNA_02513 at 2664.278 kb on - strand, within CCNA_02513 at 2664.291 kb on + strand, within CCNA_02513 at 2664.301 kb on - strand, within CCNA_02513 at 2664.312 kb on - strand, within CCNA_02513 at 2664.320 kb on + strand, within CCNA_02513 at 2664.387 kb on - strand, within CCNA_02513 at 2664.403 kb on + strand, within CCNA_02513 at 2664.446 kb on + strand, within CCNA_02513 at 2664.521 kb on + strand, within CCNA_02513 at 2664.527 kb on + strand, within CCNA_02513 at 2664.529 kb on - strand, within CCNA_02513 at 2664.529 kb on - strand, within CCNA_02513 at 2664.643 kb on + strand, within CCNA_02513 at 2664.648 kb on + strand, within CCNA_02513 at 2664.664 kb on - strand, within CCNA_02513 at 2664.732 kb on + strand at 2664.732 kb on + strand at 2664.740 kb on - strand at 2664.745 kb on - strand at 2664.805 kb on + strand at 2664.812 kb on + strand at 2664.837 kb on + strand at 2664.861 kb on + strand at 2664.861 kb on + strand at 2664.869 kb on - strand at 2664.869 kb on - strand at 2664.873 kb on - strand at 2664.901 kb on - strand at 2664.901 kb on - strand at 2664.925 kb on + strand at 2664.928 kb on + strand at 2664.950 kb on + strand at 2664.950 kb on + strand at 2664.950 kb on + strand at 2664.958 kb on - strand at 2664.958 kb on - strand at 2664.958 kb on - strand at 2664.980 kb on - strand at 2664.982 kb on - strand at 2665.007 kb on + strand, within CCNA_02514 at 2665.007 kb on + strand, within CCNA_02514 at 2665.015 kb on - strand, within CCNA_02514 at 2665.015 kb on - strand, within CCNA_02514 at 2665.015 kb on - strand, within CCNA_02514 at 2665.022 kb on + strand, within CCNA_02514 at 2665.027 kb on + strand, within CCNA_02514 at 2665.030 kb on - strand, within CCNA_02514 at 2665.052 kb on - strand, within CCNA_02514 at 2665.082 kb on - strand, within CCNA_02514 at 2665.087 kb on - strand, within CCNA_02514 at 2665.126 kb on + strand, within CCNA_02514 at 2665.154 kb on + strand, within CCNA_02514 at 2665.250 kb on - strand, within CCNA_02514 at 2665.263 kb on + strand, within CCNA_02514 at 2665.270 kb on - strand, within CCNA_02514 at 2665.293 kb on - strand, within CCNA_02514 at 2665.298 kb on + strand, within CCNA_02514 at 2665.320 kb on + strand, within CCNA_02514 at 2665.321 kb on + strand, within CCNA_02514 at 2665.330 kb on - strand, within CCNA_02514 at 2665.399 kb on + strand, within CCNA_02514 at 2665.399 kb on + strand, within CCNA_02514 at 2665.403 kb on + strand, within CCNA_02514 at 2665.418 kb on + strand, within CCNA_02514 at 2665.466 kb on - strand, within CCNA_02514 at 2665.509 kb on + strand, within CCNA_02514 at 2665.514 kb on + strand, within CCNA_02514 at 2665.514 kb on + strand, within CCNA_02514 at 2665.562 kb on + strand, within CCNA_02514 at 2665.715 kb on - strand at 2665.719 kb on + strand at 2665.727 kb on - strand at 2665.746 kb on + strand, within CCNA_02515 at 2665.774 kb on + strand, within CCNA_02515 at 2665.782 kb on - strand, within CCNA_02515 at 2665.786 kb on - strand, within CCNA_02515 at 2665.798 kb on + strand, within CCNA_02515 at 2665.806 kb on - strand, within CCNA_02515 at 2665.812 kb on - strand, within CCNA_02515 at 2665.813 kb on - strand, within CCNA_02515 at 2665.824 kb on + strand, within CCNA_02515 at 2665.837 kb on + strand, within CCNA_02515 at 2665.845 kb on - strand, within CCNA_02515
Per-strain Table
Position Strand Gene LocusTag Fraction D-Salicin (C) remove 2,662,316 + CCNA_02511 0.80 -1.8 2,662,361 + CCNA_02511 0.84 -0.6 2,662,373 + CCNA_02511 0.85 -0.6 2,662,373 + CCNA_02511 0.85 -2.2 2,662,381 - CCNA_02511 0.85 -0.5 2,662,381 - CCNA_02511 0.85 -1.7 2,662,415 - CCNA_02511 0.88 +0.6 2,662,415 - CCNA_02511 0.88 +0.0 2,662,440 - CCNA_02511 0.90 -0.7 2,662,440 - CCNA_02511 0.90 +0.9 2,662,449 + +0.5 2,662,519 + -0.2 2,662,527 - +0.9 2,662,527 - +0.6 2,662,527 - +0.6 2,662,527 - +0.6 2,662,527 - +2.1 2,662,542 + -0.5 2,662,542 + +0.1 2,662,550 - +2.3 2,662,550 - +0.7 2,662,619 + +1.1 2,662,624 + -1.2 2,662,629 + -2.1 2,662,632 - +3.2 2,662,669 - CCNA_02512 0.15 +1.4 2,662,669 - CCNA_02512 0.15 +1.5 2,662,672 - CCNA_02512 0.15 +1.1 2,662,677 - CCNA_02512 0.16 +0.7 2,662,682 - CCNA_02512 0.17 +1.5 2,662,723 - CCNA_02512 0.23 +1.9 2,662,753 + CCNA_02512 0.27 -0.4 2,662,775 + CCNA_02512 0.30 -1.4 2,662,775 + CCNA_02512 0.30 +0.5 2,662,783 - CCNA_02512 0.31 +0.2 2,662,797 + CCNA_02512 0.33 +1.5 2,662,807 + CCNA_02512 0.34 +1.6 2,662,864 - CCNA_02512 0.43 +1.1 2,662,947 + CCNA_02512 0.54 -0.3 2,662,953 + CCNA_02512 0.55 +0.5 2,662,956 - CCNA_02512 0.56 +1.6 2,663,080 + CCNA_02512 0.73 -1.9 2,663,088 - CCNA_02512 0.75 +1.6 2,663,088 - CCNA_02512 0.75 +0.8 2,663,210 - +1.4 2,663,229 + +0.1 2,663,229 + +1.1 2,663,231 + +0.2 2,663,237 - +1.4 2,663,237 - -0.6 2,663,237 - +1.3 2,663,237 - +1.4 2,663,246 - +0.9 2,663,314 - +0.3 2,663,320 + -2.1 2,663,328 - +3.3 2,663,344 + -1.1 2,663,372 + -1.3 2,663,376 + -1.0 2,663,380 - +2.0 2,663,407 + -1.3 2,663,434 + +1.5 2,663,442 - +3.7 2,663,442 - +0.2 2,663,442 - +0.5 2,663,482 + CCNA_02513 0.11 -0.6 2,663,490 - CCNA_02513 0.12 +1.9 2,663,490 - CCNA_02513 0.12 +5.2 2,663,497 + CCNA_02513 0.12 +1.5 2,663,497 + CCNA_02513 0.12 -0.5 2,663,521 - CCNA_02513 0.14 +0.8 2,663,548 - CCNA_02513 0.16 +0.5 2,663,621 + CCNA_02513 0.20 +1.1 2,663,627 + CCNA_02513 0.21 -0.6 2,663,629 - CCNA_02513 0.21 +1.3 2,663,639 - CCNA_02513 0.21 +2.2 2,663,715 + CCNA_02513 0.26 -0.1 2,663,729 + CCNA_02513 0.27 +0.4 2,663,745 - CCNA_02513 0.28 +0.3 2,663,770 + CCNA_02513 0.30 -0.8 2,663,774 - CCNA_02513 0.30 +1.2 2,663,789 - CCNA_02513 0.31 +1.2 2,663,805 - CCNA_02513 0.32 +1.7 2,663,818 + CCNA_02513 0.33 -0.8 2,663,833 - CCNA_02513 0.34 +1.8 2,663,856 - CCNA_02513 0.36 +2.4 2,663,858 + CCNA_02513 0.36 -0.3 2,663,858 + CCNA_02513 0.36 -0.6 2,663,903 + CCNA_02513 0.39 +0.1 2,663,936 - CCNA_02513 0.41 +4.0 2,663,950 - CCNA_02513 0.42 +2.2 2,663,975 - CCNA_02513 0.43 +2.1 2,664,035 + CCNA_02513 0.47 +1.0 2,664,035 + CCNA_02513 0.47 -2.0 2,664,035 + CCNA_02513 0.47 -0.0 2,664,038 - CCNA_02513 0.47 +2.8 2,664,055 + CCNA_02513 0.48 +2.2 2,664,066 - CCNA_02513 0.49 +1.5 2,664,069 + CCNA_02513 0.49 -1.3 2,664,074 + CCNA_02513 0.50 -0.8 2,664,098 - CCNA_02513 0.51 +1.6 2,664,121 - CCNA_02513 0.53 +0.9 2,664,170 + CCNA_02513 0.56 -2.5 2,664,218 - CCNA_02513 0.59 -0.1 2,664,248 + CCNA_02513 0.61 -1.5 2,664,248 + CCNA_02513 0.61 +0.4 2,664,278 - CCNA_02513 0.63 +1.1 2,664,291 + CCNA_02513 0.64 -3.4 2,664,301 - CCNA_02513 0.64 +2.0 2,664,312 - CCNA_02513 0.65 +1.4 2,664,320 + CCNA_02513 0.66 -1.0 2,664,387 - CCNA_02513 0.70 -1.1 2,664,403 + CCNA_02513 0.71 -0.0 2,664,446 + CCNA_02513 0.74 -1.9 2,664,521 + CCNA_02513 0.79 -0.5 2,664,527 + CCNA_02513 0.79 -1.2 2,664,529 - CCNA_02513 0.79 +0.6 2,664,529 - CCNA_02513 0.79 +0.3 2,664,643 + CCNA_02513 0.87 +2.7 2,664,648 + CCNA_02513 0.87 +0.6 2,664,664 - CCNA_02513 0.88 -0.1 2,664,732 + +0.7 2,664,732 + -2.0 2,664,740 - -0.3 2,664,745 - +1.7 2,664,805 + -0.2 2,664,812 + -0.2 2,664,837 + -1.5 2,664,861 + -1.0 2,664,861 + -1.5 2,664,869 - +0.4 2,664,869 - -0.1 2,664,873 - +1.9 2,664,901 - +2.4 2,664,901 - +2.9 2,664,925 + +0.4 2,664,928 + +0.9 2,664,950 + +2.9 2,664,950 + +1.1 2,664,950 + +0.4 2,664,958 - -0.7 2,664,958 - -0.6 2,664,958 - -0.9 2,664,980 - -0.7 2,664,982 - -1.7 2,665,007 + CCNA_02514 0.10 -0.4 2,665,007 + CCNA_02514 0.10 +0.5 2,665,015 - CCNA_02514 0.11 -1.7 2,665,015 - CCNA_02514 0.11 +0.2 2,665,015 - CCNA_02514 0.11 -0.5 2,665,022 + CCNA_02514 0.12 -0.9 2,665,027 + CCNA_02514 0.13 +0.4 2,665,030 - CCNA_02514 0.13 +3.0 2,665,052 - CCNA_02514 0.16 -0.2 2,665,082 - CCNA_02514 0.20 +0.5 2,665,087 - CCNA_02514 0.21 +0.2 2,665,126 + CCNA_02514 0.26 -0.3 2,665,154 + CCNA_02514 0.30 +0.8 2,665,250 - CCNA_02514 0.43 +1.3 2,665,263 + CCNA_02514 0.45 +2.6 2,665,270 - CCNA_02514 0.45 -1.0 2,665,293 - CCNA_02514 0.49 -1.9 2,665,298 + CCNA_02514 0.49 -0.0 2,665,320 + CCNA_02514 0.52 +1.3 2,665,321 + CCNA_02514 0.52 +0.9 2,665,330 - CCNA_02514 0.54 +0.7 2,665,399 + CCNA_02514 0.63 +1.6 2,665,399 + CCNA_02514 0.63 +1.7 2,665,403 + CCNA_02514 0.63 -2.0 2,665,418 + CCNA_02514 0.65 +1.5 2,665,466 - CCNA_02514 0.72 -1.6 2,665,509 + CCNA_02514 0.78 +0.1 2,665,514 + CCNA_02514 0.78 -0.8 2,665,514 + CCNA_02514 0.78 +0.3 2,665,562 + CCNA_02514 0.85 +0.6 2,665,715 - -1.4 2,665,719 + -0.8 2,665,727 - -0.1 2,665,746 + CCNA_02515 0.11 -1.4 2,665,774 + CCNA_02515 0.21 -2.3 2,665,782 - CCNA_02515 0.24 +0.6 2,665,786 - CCNA_02515 0.25 +0.9 2,665,798 + CCNA_02515 0.29 -1.8 2,665,806 - CCNA_02515 0.32 +1.6 2,665,812 - CCNA_02515 0.34 +1.4 2,665,813 - CCNA_02515 0.35 +1.3 2,665,824 + CCNA_02515 0.39 -0.4 2,665,837 + CCNA_02515 0.43 -0.2 2,665,845 - CCNA_02515 0.46 -0.0
Or see this region's nucleotide sequence