Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS09035

Experiment: R2A with Cisplatin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS09030 and CA265_RS09035 are separated by 43 nucleotidesCA265_RS09035 and CA265_RS09040 are separated by 70 nucleotides CA265_RS09030: CA265_RS09030 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 2,251,243 to 2,252,187 _RS09030 CA265_RS09035: CA265_RS09035 - anti-anti-sigma factor, at 2,252,231 to 2,252,608 _RS09035 CA265_RS09040: CA265_RS09040 - ribonuclease Z, at 2,252,679 to 2,253,584 _RS09040 Position (kb) 2252 2253Strain fitness (log2 ratio) -1 0 1at 2252.248 kb on + strandat 2252.261 kb on + strandat 2252.302 kb on + strand, within CA265_RS09035at 2252.303 kb on - strand, within CA265_RS09035at 2252.330 kb on + strand, within CA265_RS09035at 2252.331 kb on - strand, within CA265_RS09035at 2252.361 kb on + strand, within CA265_RS09035at 2252.361 kb on + strand, within CA265_RS09035at 2252.418 kb on + strand, within CA265_RS09035at 2252.462 kb on - strand, within CA265_RS09035at 2252.539 kb on + strand, within CA265_RS09035at 2252.540 kb on - strand, within CA265_RS09035at 2252.607 kb on - strandat 2252.607 kb on - strandat 2252.619 kb on - strandat 2252.666 kb on - strandat 2252.667 kb on + strandat 2252.773 kb on - strand, within CA265_RS09040at 2252.799 kb on - strand, within CA265_RS09040at 2252.820 kb on + strand, within CA265_RS09040at 2252.829 kb on - strand, within CA265_RS09040at 2252.849 kb on + strand, within CA265_RS09040at 2252.866 kb on + strand, within CA265_RS09040at 2252.866 kb on + strand, within CA265_RS09040at 2252.944 kb on + strand, within CA265_RS09040at 2252.962 kb on + strand, within CA265_RS09040at 2252.963 kb on - strand, within CA265_RS09040at 2253.076 kb on + strand, within CA265_RS09040at 2253.114 kb on - strand, within CA265_RS09040at 2253.116 kb on + strand, within CA265_RS09040at 2253.116 kb on + strand, within CA265_RS09040at 2253.192 kb on + strand, within CA265_RS09040at 2253.196 kb on - strand, within CA265_RS09040at 2253.198 kb on - strand, within CA265_RS09040at 2253.262 kb on - strand, within CA265_RS09040at 2253.263 kb on + strand, within CA265_RS09040at 2253.263 kb on + strand, within CA265_RS09040at 2253.298 kb on - strand, within CA265_RS09040at 2253.428 kb on - strand, within CA265_RS09040at 2253.546 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.005 mg/ml
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2,252,248 + +1.3
2,252,261 + +0.3
2,252,302 + CA265_RS09035 0.19 +0.6
2,252,303 - CA265_RS09035 0.19 +0.7
2,252,330 + CA265_RS09035 0.26 +0.1
2,252,331 - CA265_RS09035 0.26 +0.3
2,252,361 + CA265_RS09035 0.34 +0.1
2,252,361 + CA265_RS09035 0.34 +0.0
2,252,418 + CA265_RS09035 0.49 +0.8
2,252,462 - CA265_RS09035 0.61 +0.1
2,252,539 + CA265_RS09035 0.81 +0.0
2,252,540 - CA265_RS09035 0.82 -1.7
2,252,607 - +0.5
2,252,607 - +0.3
2,252,619 - +1.4
2,252,666 - +0.0
2,252,667 + +0.2
2,252,773 - CA265_RS09040 0.10 -0.2
2,252,799 - CA265_RS09040 0.13 -0.6
2,252,820 + CA265_RS09040 0.16 +0.1
2,252,829 - CA265_RS09040 0.17 +0.2
2,252,849 + CA265_RS09040 0.19 -0.0
2,252,866 + CA265_RS09040 0.21 +0.4
2,252,866 + CA265_RS09040 0.21 +0.2
2,252,944 + CA265_RS09040 0.29 +0.4
2,252,962 + CA265_RS09040 0.31 -0.0
2,252,963 - CA265_RS09040 0.31 +0.2
2,253,076 + CA265_RS09040 0.44 +0.1
2,253,114 - CA265_RS09040 0.48 -1.2
2,253,116 + CA265_RS09040 0.48 -0.5
2,253,116 + CA265_RS09040 0.48 -0.4
2,253,192 + CA265_RS09040 0.57 -0.0
2,253,196 - CA265_RS09040 0.57 -1.0
2,253,198 - CA265_RS09040 0.57 -1.2
2,253,262 - CA265_RS09040 0.64 -0.4
2,253,263 + CA265_RS09040 0.64 -0.0
2,253,263 + CA265_RS09040 0.64 -0.2
2,253,298 - CA265_RS09040 0.68 -0.1
2,253,428 - CA265_RS09040 0.83 +0.5
2,253,546 - +0.3

Or see this region's nucleotide sequence