Experiment: R2A with Cisplatin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS09030 and CA265_RS09035 are separated by 43 nucleotides CA265_RS09035 and CA265_RS09040 are separated by 70 nucleotides
CA265_RS09030: CA265_RS09030 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 2,251,243 to 2,252,187
_RS09030
CA265_RS09035: CA265_RS09035 - anti-anti-sigma factor, at 2,252,231 to 2,252,608
_RS09035
CA265_RS09040: CA265_RS09040 - ribonuclease Z, at 2,252,679 to 2,253,584
_RS09040
Position (kb)
2252
2253 Strain fitness (log2 ratio)
-1
0
1 at 2252.248 kb on + strand at 2252.261 kb on + strand at 2252.302 kb on + strand, within CA265_RS09035 at 2252.303 kb on - strand, within CA265_RS09035 at 2252.330 kb on + strand, within CA265_RS09035 at 2252.331 kb on - strand, within CA265_RS09035 at 2252.361 kb on + strand, within CA265_RS09035 at 2252.361 kb on + strand, within CA265_RS09035 at 2252.418 kb on + strand, within CA265_RS09035 at 2252.462 kb on - strand, within CA265_RS09035 at 2252.539 kb on + strand, within CA265_RS09035 at 2252.540 kb on - strand, within CA265_RS09035 at 2252.607 kb on - strand at 2252.607 kb on - strand at 2252.619 kb on - strand at 2252.666 kb on - strand at 2252.667 kb on + strand at 2252.773 kb on - strand, within CA265_RS09040 at 2252.799 kb on - strand, within CA265_RS09040 at 2252.820 kb on + strand, within CA265_RS09040 at 2252.829 kb on - strand, within CA265_RS09040 at 2252.849 kb on + strand, within CA265_RS09040 at 2252.866 kb on + strand, within CA265_RS09040 at 2252.866 kb on + strand, within CA265_RS09040 at 2252.944 kb on + strand, within CA265_RS09040 at 2252.962 kb on + strand, within CA265_RS09040 at 2252.963 kb on - strand, within CA265_RS09040 at 2253.076 kb on + strand, within CA265_RS09040 at 2253.114 kb on - strand, within CA265_RS09040 at 2253.116 kb on + strand, within CA265_RS09040 at 2253.116 kb on + strand, within CA265_RS09040 at 2253.192 kb on + strand, within CA265_RS09040 at 2253.196 kb on - strand, within CA265_RS09040 at 2253.198 kb on - strand, within CA265_RS09040 at 2253.262 kb on - strand, within CA265_RS09040 at 2253.263 kb on + strand, within CA265_RS09040 at 2253.263 kb on + strand, within CA265_RS09040 at 2253.298 kb on - strand, within CA265_RS09040 at 2253.428 kb on - strand, within CA265_RS09040 at 2253.546 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.005 mg/ml remove 2,252,248 + +1.3 2,252,261 + +0.3 2,252,302 + CA265_RS09035 0.19 +0.6 2,252,303 - CA265_RS09035 0.19 +0.7 2,252,330 + CA265_RS09035 0.26 +0.1 2,252,331 - CA265_RS09035 0.26 +0.3 2,252,361 + CA265_RS09035 0.34 +0.1 2,252,361 + CA265_RS09035 0.34 +0.0 2,252,418 + CA265_RS09035 0.49 +0.8 2,252,462 - CA265_RS09035 0.61 +0.1 2,252,539 + CA265_RS09035 0.81 +0.0 2,252,540 - CA265_RS09035 0.82 -1.7 2,252,607 - +0.5 2,252,607 - +0.3 2,252,619 - +1.4 2,252,666 - +0.0 2,252,667 + +0.2 2,252,773 - CA265_RS09040 0.10 -0.2 2,252,799 - CA265_RS09040 0.13 -0.6 2,252,820 + CA265_RS09040 0.16 +0.1 2,252,829 - CA265_RS09040 0.17 +0.2 2,252,849 + CA265_RS09040 0.19 -0.0 2,252,866 + CA265_RS09040 0.21 +0.4 2,252,866 + CA265_RS09040 0.21 +0.2 2,252,944 + CA265_RS09040 0.29 +0.4 2,252,962 + CA265_RS09040 0.31 -0.0 2,252,963 - CA265_RS09040 0.31 +0.2 2,253,076 + CA265_RS09040 0.44 +0.1 2,253,114 - CA265_RS09040 0.48 -1.2 2,253,116 + CA265_RS09040 0.48 -0.5 2,253,116 + CA265_RS09040 0.48 -0.4 2,253,192 + CA265_RS09040 0.57 -0.0 2,253,196 - CA265_RS09040 0.57 -1.0 2,253,198 - CA265_RS09040 0.57 -1.2 2,253,262 - CA265_RS09040 0.64 -0.4 2,253,263 + CA265_RS09040 0.64 -0.0 2,253,263 + CA265_RS09040 0.64 -0.2 2,253,298 - CA265_RS09040 0.68 -0.1 2,253,428 - CA265_RS09040 0.83 +0.5 2,253,546 - +0.3
Or see this region's nucleotide sequence