Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS02795

Experiment: R2A with Cisplatin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS02790 and CA265_RS02795 are separated by 340 nucleotidesCA265_RS02795 and CA265_RS02800 are separated by 298 nucleotidesCA265_RS02800 and CA265_RS02805 are separated by 115 nucleotides CA265_RS02790: CA265_RS02790 - hypothetical protein, at 701,720 to 703,315 _RS02790 CA265_RS02795: CA265_RS02795 - hypothetical protein, at 703,656 to 703,961 _RS02795 CA265_RS02800: CA265_RS02800 - hypothetical protein, at 704,260 to 704,535 _RS02800 CA265_RS02805: CA265_RS02805 - hypothetical protein, at 704,651 to 705,805 _RS02805 Position (kb) 703 704Strain fitness (log2 ratio) -2 -1 0 1at 702.674 kb on - strand, within CA265_RS02790at 702.697 kb on - strand, within CA265_RS02790at 702.735 kb on - strand, within CA265_RS02790at 702.749 kb on - strand, within CA265_RS02790at 702.759 kb on + strand, within CA265_RS02790at 702.821 kb on + strand, within CA265_RS02790at 702.822 kb on - strand, within CA265_RS02790at 702.860 kb on + strand, within CA265_RS02790at 702.867 kb on + strand, within CA265_RS02790at 702.867 kb on + strand, within CA265_RS02790at 702.963 kb on + strand, within CA265_RS02790at 702.964 kb on - strand, within CA265_RS02790at 702.970 kb on - strand, within CA265_RS02790at 702.970 kb on - strand, within CA265_RS02790at 702.975 kb on - strand, within CA265_RS02790at 702.986 kb on + strand, within CA265_RS02790at 703.024 kb on - strand, within CA265_RS02790at 703.139 kb on - strand, within CA265_RS02790at 703.139 kb on - strand, within CA265_RS02790at 703.144 kb on + strand, within CA265_RS02790at 703.145 kb on - strand, within CA265_RS02790at 703.175 kb on + strandat 703.177 kb on + strandat 703.177 kb on + strandat 703.178 kb on - strandat 703.178 kb on - strandat 703.196 kb on + strandat 703.197 kb on - strandat 703.233 kb on - strandat 703.235 kb on - strandat 703.235 kb on - strandat 703.297 kb on + strandat 703.310 kb on - strandat 703.327 kb on + strandat 703.328 kb on - strandat 703.330 kb on - strandat 703.353 kb on - strandat 703.390 kb on - strandat 703.411 kb on - strandat 703.436 kb on + strandat 703.439 kb on + strandat 703.440 kb on - strandat 703.452 kb on + strandat 703.452 kb on + strandat 703.456 kb on - strandat 703.520 kb on - strandat 703.545 kb on + strandat 703.582 kb on - strandat 703.754 kb on + strand, within CA265_RS02795at 703.755 kb on - strand, within CA265_RS02795at 703.755 kb on - strand, within CA265_RS02795at 703.767 kb on - strand, within CA265_RS02795at 703.950 kb on - strandat 703.950 kb on - strandat 704.016 kb on + strandat 704.027 kb on + strandat 704.087 kb on - strandat 704.087 kb on - strandat 704.153 kb on - strandat 704.166 kb on - strandat 704.299 kb on + strand, within CA265_RS02800at 704.300 kb on - strand, within CA265_RS02800at 704.300 kb on - strand, within CA265_RS02800at 704.304 kb on + strand, within CA265_RS02800at 704.324 kb on + strand, within CA265_RS02800at 704.325 kb on - strand, within CA265_RS02800at 704.333 kb on - strand, within CA265_RS02800at 704.355 kb on - strand, within CA265_RS02800at 704.361 kb on + strand, within CA265_RS02800at 704.362 kb on - strand, within CA265_RS02800at 704.452 kb on - strand, within CA265_RS02800at 704.460 kb on + strand, within CA265_RS02800at 704.519 kb on + strandat 704.520 kb on - strandat 704.535 kb on + strandat 704.536 kb on - strandat 704.562 kb on - strandat 704.564 kb on - strandat 704.583 kb on - strandat 704.635 kb on - strandat 704.676 kb on + strandat 704.780 kb on - strand, within CA265_RS02805at 704.780 kb on - strand, within CA265_RS02805at 704.781 kb on + strand, within CA265_RS02805at 704.782 kb on - strand, within CA265_RS02805at 704.837 kb on - strand, within CA265_RS02805at 704.842 kb on - strand, within CA265_RS02805at 704.867 kb on - strand, within CA265_RS02805at 704.868 kb on + strand, within CA265_RS02805at 704.870 kb on + strand, within CA265_RS02805at 704.922 kb on + strand, within CA265_RS02805

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.005 mg/ml
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702,674 - CA265_RS02790 0.60 +0.1
702,697 - CA265_RS02790 0.61 +0.2
702,735 - CA265_RS02790 0.64 -0.5
702,749 - CA265_RS02790 0.64 -0.1
702,759 + CA265_RS02790 0.65 -0.8
702,821 + CA265_RS02790 0.69 -0.3
702,822 - CA265_RS02790 0.69 +0.3
702,860 + CA265_RS02790 0.71 -1.1
702,867 + CA265_RS02790 0.72 -0.3
702,867 + CA265_RS02790 0.72 -0.7
702,963 + CA265_RS02790 0.78 -0.7
702,964 - CA265_RS02790 0.78 +0.4
702,970 - CA265_RS02790 0.78 -0.5
702,970 - CA265_RS02790 0.78 +0.0
702,975 - CA265_RS02790 0.79 -0.0
702,986 + CA265_RS02790 0.79 -1.1
703,024 - CA265_RS02790 0.82 +0.2
703,139 - CA265_RS02790 0.89 +0.4
703,139 - CA265_RS02790 0.89 -0.1
703,144 + CA265_RS02790 0.89 -0.4
703,145 - CA265_RS02790 0.89 -0.4
703,175 + -0.5
703,177 + -0.9
703,177 + +0.5
703,178 - +0.3
703,178 - +0.1
703,196 + -0.5
703,197 - -0.2
703,233 - -0.0
703,235 - -0.3
703,235 - +0.2
703,297 + -1.8
703,310 - -0.9
703,327 + -0.1
703,328 - +0.1
703,330 - +0.2
703,353 - +0.0
703,390 - +0.2
703,411 - +1.6
703,436 + -1.2
703,439 + +0.6
703,440 - -0.9
703,452 + -0.9
703,452 + +0.2
703,456 - +0.1
703,520 - +1.6
703,545 + -2.5
703,582 - -0.3
703,754 + CA265_RS02795 0.32 +0.8
703,755 - CA265_RS02795 0.32 +1.1
703,755 - CA265_RS02795 0.32 +0.5
703,767 - CA265_RS02795 0.36 -0.6
703,950 - -0.7
703,950 - +0.2
704,016 + -1.4
704,027 + -0.3
704,087 - +0.3
704,087 - +0.2
704,153 - +0.3
704,166 - -0.4
704,299 + CA265_RS02800 0.14 +0.1
704,300 - CA265_RS02800 0.14 -0.6
704,300 - CA265_RS02800 0.14 +0.3
704,304 + CA265_RS02800 0.16 +0.0
704,324 + CA265_RS02800 0.23 +0.3
704,325 - CA265_RS02800 0.24 -0.9
704,333 - CA265_RS02800 0.26 +0.4
704,355 - CA265_RS02800 0.34 -0.7
704,361 + CA265_RS02800 0.37 +0.3
704,362 - CA265_RS02800 0.37 +0.3
704,452 - CA265_RS02800 0.70 +0.1
704,460 + CA265_RS02800 0.72 -0.3
704,519 + -0.2
704,520 - -1.0
704,535 + +1.7
704,536 - +0.5
704,562 - +0.8
704,564 - +0.7
704,583 - -0.6
704,635 - -0.1
704,676 + -0.0
704,780 - CA265_RS02805 0.11 +0.2
704,780 - CA265_RS02805 0.11 -0.5
704,781 + CA265_RS02805 0.11 +0.4
704,782 - CA265_RS02805 0.11 -0.6
704,837 - CA265_RS02805 0.16 +0.2
704,842 - CA265_RS02805 0.17 -1.1
704,867 - CA265_RS02805 0.19 -0.2
704,868 + CA265_RS02805 0.19 +0.2
704,870 + CA265_RS02805 0.19 +0.5
704,922 + CA265_RS02805 0.23 +0.4

Or see this region's nucleotide sequence