Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4988

Experiment: Nickel (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4986 and Ac3H11_4987 are separated by 13 nucleotidesAc3H11_4987 and Ac3H11_4988 overlap by 4 nucleotidesAc3H11_4988 and Ac3H11_4989 are separated by 101 nucleotides Ac3H11_4986 - High-affinity leucine-specific transport system, periplasmic binding protein LivK (TC 3.A.1.4.1), at 149,922 to 151,103 _4986 Ac3H11_4987 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 151,117 to 151,935 _4987 Ac3H11_4988 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 151,932 to 153,734 _4988 Ac3H11_4989 - Enoyl-CoA hydratase (EC 4.2.1.17), at 153,836 to 154,636 _4989 Position (kb) 151 152 153 154Strain fitness (log2 ratio) -3 -2 -1 0 1at 151.171 kb on + strandat 151.171 kb on + strandat 151.171 kb on + strandat 151.171 kb on + strandat 151.171 kb on + strandat 151.172 kb on - strandat 151.172 kb on - strandat 151.172 kb on - strandat 151.462 kb on + strand, within Ac3H11_4987at 151.462 kb on + strand, within Ac3H11_4987at 151.462 kb on + strand, within Ac3H11_4987at 151.462 kb on + strand, within Ac3H11_4987at 151.462 kb on + strand, within Ac3H11_4987at 151.462 kb on + strand, within Ac3H11_4987at 151.462 kb on + strand, within Ac3H11_4987at 151.463 kb on - strand, within Ac3H11_4987at 151.463 kb on - strand, within Ac3H11_4987at 151.463 kb on - strand, within Ac3H11_4987at 151.463 kb on - strand, within Ac3H11_4987at 151.463 kb on - strand, within Ac3H11_4987at 151.463 kb on - strand, within Ac3H11_4987at 151.463 kb on - strand, within Ac3H11_4987at 151.485 kb on + strand, within Ac3H11_4987at 151.485 kb on + strand, within Ac3H11_4987at 151.485 kb on + strand, within Ac3H11_4987at 151.486 kb on - strand, within Ac3H11_4987at 151.486 kb on - strand, within Ac3H11_4987at 151.510 kb on + strand, within Ac3H11_4987at 151.510 kb on + strand, within Ac3H11_4987at 151.510 kb on + strand, within Ac3H11_4987at 151.511 kb on - strand, within Ac3H11_4987at 151.511 kb on - strand, within Ac3H11_4987at 151.516 kb on + strand, within Ac3H11_4987at 151.516 kb on + strand, within Ac3H11_4987at 151.516 kb on + strand, within Ac3H11_4987at 151.516 kb on + strand, within Ac3H11_4987at 151.516 kb on + strand, within Ac3H11_4987at 151.516 kb on + strand, within Ac3H11_4987at 151.516 kb on + strand, within Ac3H11_4987at 151.517 kb on - strand, within Ac3H11_4987at 151.559 kb on - strand, within Ac3H11_4987at 151.676 kb on + strand, within Ac3H11_4987at 151.676 kb on + strand, within Ac3H11_4987at 151.676 kb on + strand, within Ac3H11_4987at 151.676 kb on + strand, within Ac3H11_4987at 151.676 kb on + strand, within Ac3H11_4987at 151.676 kb on + strand, within Ac3H11_4987at 151.676 kb on + strand, within Ac3H11_4987at 151.677 kb on - strand, within Ac3H11_4987at 151.677 kb on - strand, within Ac3H11_4987at 151.677 kb on - strand, within Ac3H11_4987at 151.677 kb on - strand, within Ac3H11_4987at 151.677 kb on - strand, within Ac3H11_4987at 151.677 kb on - strand, within Ac3H11_4987at 151.677 kb on - strand, within Ac3H11_4987at 151.677 kb on - strand, within Ac3H11_4987at 151.677 kb on - strand, within Ac3H11_4987at 151.677 kb on - strand, within Ac3H11_4987at 151.677 kb on - strand, within Ac3H11_4987at 151.677 kb on - strand, within Ac3H11_4987at 151.774 kb on + strand, within Ac3H11_4987at 151.775 kb on - strand, within Ac3H11_4987at 151.852 kb on + strand, within Ac3H11_4987at 151.906 kb on + strandat 151.906 kb on + strandat 151.907 kb on - strandat 151.907 kb on - strandat 151.907 kb on - strandat 151.907 kb on - strandat 151.907 kb on - strandat 152.055 kb on + strandat 152.206 kb on - strand, within Ac3H11_4988at 152.206 kb on - strand, within Ac3H11_4988at 152.235 kb on + strand, within Ac3H11_4988at 152.235 kb on + strand, within Ac3H11_4988at 152.235 kb on + strand, within Ac3H11_4988at 152.235 kb on + strand, within Ac3H11_4988at 152.235 kb on + strand, within Ac3H11_4988at 152.236 kb on - strand, within Ac3H11_4988at 152.236 kb on - strand, within Ac3H11_4988at 152.236 kb on - strand, within Ac3H11_4988at 152.502 kb on + strand, within Ac3H11_4988at 152.502 kb on + strand, within Ac3H11_4988at 152.502 kb on + strand, within Ac3H11_4988at 152.503 kb on - strand, within Ac3H11_4988at 152.503 kb on - strand, within Ac3H11_4988at 152.503 kb on - strand, within Ac3H11_4988at 152.623 kb on - strand, within Ac3H11_4988at 152.623 kb on - strand, within Ac3H11_4988at 152.623 kb on - strand, within Ac3H11_4988at 152.854 kb on - strand, within Ac3H11_4988at 152.919 kb on + strand, within Ac3H11_4988at 152.919 kb on + strand, within Ac3H11_4988at 152.920 kb on - strand, within Ac3H11_4988at 152.931 kb on + strand, within Ac3H11_4988at 152.931 kb on + strand, within Ac3H11_4988at 152.931 kb on + strand, within Ac3H11_4988at 152.932 kb on - strand, within Ac3H11_4988at 152.932 kb on - strand, within Ac3H11_4988at 153.066 kb on + strand, within Ac3H11_4988at 153.066 kb on + strand, within Ac3H11_4988at 153.066 kb on + strand, within Ac3H11_4988at 153.066 kb on + strand, within Ac3H11_4988at 153.066 kb on + strand, within Ac3H11_4988at 153.067 kb on - strand, within Ac3H11_4988at 153.067 kb on - strand, within Ac3H11_4988at 153.067 kb on - strand, within Ac3H11_4988at 153.067 kb on - strand, within Ac3H11_4988at 153.067 kb on - strand, within Ac3H11_4988at 153.067 kb on - strand, within Ac3H11_4988at 153.219 kb on + strand, within Ac3H11_4988at 153.220 kb on - strand, within Ac3H11_4988at 153.220 kb on - strand, within Ac3H11_4988at 153.220 kb on - strand, within Ac3H11_4988at 153.220 kb on - strand, within Ac3H11_4988at 153.516 kb on + strand, within Ac3H11_4988at 153.693 kb on + strandat 153.693 kb on + strandat 153.693 kb on + strandat 153.694 kb on - strandat 153.694 kb on - strandat 153.702 kb on + strandat 153.702 kb on + strandat 153.702 kb on + strandat 153.703 kb on - strandat 153.703 kb on - strandat 153.726 kb on + strandat 153.726 kb on + strandat 153.727 kb on - strandat 153.796 kb on + strandat 153.797 kb on - strandat 154.214 kb on + strand, within Ac3H11_4989at 154.214 kb on + strand, within Ac3H11_4989at 154.214 kb on + strand, within Ac3H11_4989at 154.215 kb on - strand, within Ac3H11_4989at 154.253 kb on + strand, within Ac3H11_4989at 154.253 kb on + strand, within Ac3H11_4989at 154.254 kb on - strand, within Ac3H11_4989at 154.254 kb on - strand, within Ac3H11_4989at 154.472 kb on + strand, within Ac3H11_4989at 154.726 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.6 mM
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151,171 + +0.8
151,171 + -0.8
151,171 + +0.7
151,171 + -2.5
151,171 + -1.8
151,172 - -0.0
151,172 - -2.5
151,172 - -0.3
151,462 + Ac3H11_4987 0.42 -0.8
151,462 + Ac3H11_4987 0.42 -0.5
151,462 + Ac3H11_4987 0.42 -1.8
151,462 + Ac3H11_4987 0.42 -0.8
151,462 + Ac3H11_4987 0.42 -0.7
151,462 + Ac3H11_4987 0.42 +1.1
151,462 + Ac3H11_4987 0.42 -0.7
151,463 - Ac3H11_4987 0.42 -0.1
151,463 - Ac3H11_4987 0.42 +0.6
151,463 - Ac3H11_4987 0.42 -0.1
151,463 - Ac3H11_4987 0.42 +0.2
151,463 - Ac3H11_4987 0.42 +1.0
151,463 - Ac3H11_4987 0.42 +0.9
151,463 - Ac3H11_4987 0.42 +1.7
151,485 + Ac3H11_4987 0.45 -0.2
151,485 + Ac3H11_4987 0.45 -0.4
151,485 + Ac3H11_4987 0.45 +0.9
151,486 - Ac3H11_4987 0.45 +1.1
151,486 - Ac3H11_4987 0.45 +0.1
151,510 + Ac3H11_4987 0.48 +1.2
151,510 + Ac3H11_4987 0.48 -0.1
151,510 + Ac3H11_4987 0.48 -3.6
151,511 - Ac3H11_4987 0.48 -0.1
151,511 - Ac3H11_4987 0.48 +0.0
151,516 + Ac3H11_4987 0.49 -0.4
151,516 + Ac3H11_4987 0.49 +0.3
151,516 + Ac3H11_4987 0.49 +0.9
151,516 + Ac3H11_4987 0.49 -0.5
151,516 + Ac3H11_4987 0.49 -1.0
151,516 + Ac3H11_4987 0.49 +0.5
151,516 + Ac3H11_4987 0.49 -0.0
151,517 - Ac3H11_4987 0.49 -0.1
151,559 - Ac3H11_4987 0.54 -0.2
151,676 + Ac3H11_4987 0.68 -0.3
151,676 + Ac3H11_4987 0.68 +0.6
151,676 + Ac3H11_4987 0.68 -1.2
151,676 + Ac3H11_4987 0.68 -0.1
151,676 + Ac3H11_4987 0.68 -0.4
151,676 + Ac3H11_4987 0.68 +0.3
151,676 + Ac3H11_4987 0.68 +0.6
151,677 - Ac3H11_4987 0.68 -0.5
151,677 - Ac3H11_4987 0.68 +0.4
151,677 - Ac3H11_4987 0.68 -0.0
151,677 - Ac3H11_4987 0.68 -1.2
151,677 - Ac3H11_4987 0.68 +0.4
151,677 - Ac3H11_4987 0.68 -1.5
151,677 - Ac3H11_4987 0.68 +0.3
151,677 - Ac3H11_4987 0.68 -0.1
151,677 - Ac3H11_4987 0.68 -1.9
151,677 - Ac3H11_4987 0.68 +0.2
151,677 - Ac3H11_4987 0.68 +0.2
151,677 - Ac3H11_4987 0.68 -0.1
151,774 + Ac3H11_4987 0.80 +0.7
151,775 - Ac3H11_4987 0.80 +0.5
151,852 + Ac3H11_4987 0.90 +0.8
151,906 + -0.6
151,906 + +0.8
151,907 - -0.0
151,907 - -1.2
151,907 - -0.3
151,907 - +0.3
151,907 - -1.2
152,055 + +1.0
152,206 - Ac3H11_4988 0.15 +0.1
152,206 - Ac3H11_4988 0.15 -0.4
152,235 + Ac3H11_4988 0.17 +0.4
152,235 + Ac3H11_4988 0.17 -0.9
152,235 + Ac3H11_4988 0.17 -0.0
152,235 + Ac3H11_4988 0.17 -0.0
152,235 + Ac3H11_4988 0.17 -0.1
152,236 - Ac3H11_4988 0.17 -0.2
152,236 - Ac3H11_4988 0.17 -0.2
152,236 - Ac3H11_4988 0.17 +0.1
152,502 + Ac3H11_4988 0.32 -0.9
152,502 + Ac3H11_4988 0.32 +0.1
152,502 + Ac3H11_4988 0.32 -0.8
152,503 - Ac3H11_4988 0.32 +0.4
152,503 - Ac3H11_4988 0.32 -0.1
152,503 - Ac3H11_4988 0.32 -0.7
152,623 - Ac3H11_4988 0.38 -0.0
152,623 - Ac3H11_4988 0.38 +0.5
152,623 - Ac3H11_4988 0.38 +0.3
152,854 - Ac3H11_4988 0.51 +0.6
152,919 + Ac3H11_4988 0.55 -0.0
152,919 + Ac3H11_4988 0.55 +0.3
152,920 - Ac3H11_4988 0.55 -0.1
152,931 + Ac3H11_4988 0.55 +0.2
152,931 + Ac3H11_4988 0.55 +0.4
152,931 + Ac3H11_4988 0.55 -0.6
152,932 - Ac3H11_4988 0.55 -0.1
152,932 - Ac3H11_4988 0.55 +0.2
153,066 + Ac3H11_4988 0.63 -1.4
153,066 + Ac3H11_4988 0.63 +0.4
153,066 + Ac3H11_4988 0.63 +0.2
153,066 + Ac3H11_4988 0.63 -2.5
153,066 + Ac3H11_4988 0.63 -0.3
153,067 - Ac3H11_4988 0.63 -0.6
153,067 - Ac3H11_4988 0.63 -0.3
153,067 - Ac3H11_4988 0.63 -0.1
153,067 - Ac3H11_4988 0.63 -1.5
153,067 - Ac3H11_4988 0.63 -0.7
153,067 - Ac3H11_4988 0.63 +0.3
153,219 + Ac3H11_4988 0.71 +0.7
153,220 - Ac3H11_4988 0.71 -0.3
153,220 - Ac3H11_4988 0.71 -0.7
153,220 - Ac3H11_4988 0.71 +0.0
153,220 - Ac3H11_4988 0.71 +0.6
153,516 + Ac3H11_4988 0.88 -0.9
153,693 + -0.5
153,693 + +0.1
153,693 + +0.8
153,694 - -0.1
153,694 - +0.7
153,702 + -0.6
153,702 + -0.2
153,702 + -0.4
153,703 - +0.0
153,703 - -0.0
153,726 + +0.5
153,726 + +0.9
153,727 - -2.2
153,796 + -1.6
153,797 - -0.2
154,214 + Ac3H11_4989 0.47 -0.5
154,214 + Ac3H11_4989 0.47 -0.8
154,214 + Ac3H11_4989 0.47 +0.5
154,215 - Ac3H11_4989 0.47 -0.2
154,253 + Ac3H11_4989 0.52 -0.1
154,253 + Ac3H11_4989 0.52 -0.8
154,254 - Ac3H11_4989 0.52 +0.0
154,254 - Ac3H11_4989 0.52 +0.5
154,472 + Ac3H11_4989 0.79 -1.2
154,726 - -0.3

Or see this region's nucleotide sequence