Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4755

Experiment: Nickel (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4753 and Ac3H11_4754 are separated by 51 nucleotidesAc3H11_4754 and Ac3H11_4829 are separated by 49 nucleotidesAc3H11_4829 and Ac3H11_4755 are separated by 47 nucleotidesAc3H11_4755 and Ac3H11_4756 are separated by 32 nucleotides Ac3H11_4753 - Stringent starvation protein A, at 54,160 to 54,771 _4753 Ac3H11_4754 - ClpXP protease specificity-enhancing factor / Stringent starvation protein B, at 54,823 to 55,350 _4754 Ac3H11_4829 - tRNA-Thr-TGT, at 55,400 to 55,472 _4829 Ac3H11_4755 - Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives, at 55,520 to 55,819 _4755 Ac3H11_4756 - Peptidase, M23/M37 family, at 55,852 to 56,814 _4756 Position (kb) 55 56Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 54.769 kb on + strandat 54.769 kb on + strandat 54.769 kb on + strandat 54.769 kb on + strandat 54.769 kb on + strandat 54.770 kb on - strandat 54.770 kb on - strandat 54.770 kb on - strandat 54.770 kb on - strandat 54.785 kb on + strandat 54.785 kb on + strandat 54.785 kb on + strandat 54.785 kb on + strandat 54.785 kb on + strandat 54.785 kb on + strandat 54.785 kb on + strandat 54.786 kb on - strandat 54.786 kb on - strandat 54.786 kb on - strandat 54.797 kb on + strandat 54.797 kb on + strandat 55.348 kb on + strandat 55.378 kb on + strandat 55.378 kb on + strandat 55.385 kb on + strandat 55.850 kb on + strandat 55.850 kb on + strandat 55.851 kb on - strandat 55.851 kb on - strandat 55.911 kb on + strandat 55.912 kb on - strandat 55.975 kb on + strand, within Ac3H11_4756at 55.975 kb on + strand, within Ac3H11_4756at 55.975 kb on + strand, within Ac3H11_4756at 55.975 kb on + strand, within Ac3H11_4756at 55.975 kb on + strand, within Ac3H11_4756at 55.976 kb on - strand, within Ac3H11_4756at 55.976 kb on - strand, within Ac3H11_4756at 55.976 kb on - strand, within Ac3H11_4756at 55.976 kb on - strand, within Ac3H11_4756at 55.976 kb on - strand, within Ac3H11_4756at 56.193 kb on + strand, within Ac3H11_4756at 56.193 kb on + strand, within Ac3H11_4756at 56.193 kb on + strand, within Ac3H11_4756at 56.193 kb on + strand, within Ac3H11_4756at 56.193 kb on + strand, within Ac3H11_4756at 56.193 kb on + strand, within Ac3H11_4756at 56.193 kb on + strand, within Ac3H11_4756at 56.193 kb on + strand, within Ac3H11_4756at 56.194 kb on - strand, within Ac3H11_4756at 56.194 kb on - strand, within Ac3H11_4756at 56.194 kb on - strand, within Ac3H11_4756at 56.194 kb on - strand, within Ac3H11_4756at 56.527 kb on + strand, within Ac3H11_4756at 56.527 kb on + strand, within Ac3H11_4756at 56.527 kb on + strand, within Ac3H11_4756at 56.528 kb on - strand, within Ac3H11_4756at 56.528 kb on - strand, within Ac3H11_4756at 56.528 kb on - strand, within Ac3H11_4756at 56.528 kb on - strand, within Ac3H11_4756at 56.540 kb on - strand, within Ac3H11_4756at 56.604 kb on + strand, within Ac3H11_4756at 56.605 kb on - strand, within Ac3H11_4756at 56.812 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.6 mM
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54,769 + +0.2
54,769 + -0.4
54,769 + +0.3
54,769 + -0.6
54,769 + -0.2
54,770 - -0.0
54,770 - -1.7
54,770 - +0.9
54,770 - -1.5
54,785 + -0.1
54,785 + +0.5
54,785 + +0.1
54,785 + -0.4
54,785 + -0.1
54,785 + -2.2
54,785 + -1.8
54,786 - +0.2
54,786 - -1.4
54,786 - -1.1
54,797 + -0.4
54,797 + +0.4
55,348 + +0.8
55,378 + -0.8
55,378 + -0.1
55,385 + -0.7
55,850 + +0.7
55,850 + -0.1
55,851 - -0.8
55,851 - +0.5
55,911 + +2.0
55,912 - -1.0
55,975 + Ac3H11_4756 0.13 -0.5
55,975 + Ac3H11_4756 0.13 +0.6
55,975 + Ac3H11_4756 0.13 -0.0
55,975 + Ac3H11_4756 0.13 +1.1
55,975 + Ac3H11_4756 0.13 -0.7
55,976 - Ac3H11_4756 0.13 -1.5
55,976 - Ac3H11_4756 0.13 -1.1
55,976 - Ac3H11_4756 0.13 -0.3
55,976 - Ac3H11_4756 0.13 -0.8
55,976 - Ac3H11_4756 0.13 -0.8
56,193 + Ac3H11_4756 0.35 +0.2
56,193 + Ac3H11_4756 0.35 -1.5
56,193 + Ac3H11_4756 0.35 +1.8
56,193 + Ac3H11_4756 0.35 -0.1
56,193 + Ac3H11_4756 0.35 -0.3
56,193 + Ac3H11_4756 0.35 +0.3
56,193 + Ac3H11_4756 0.35 +0.1
56,193 + Ac3H11_4756 0.35 +0.6
56,194 - Ac3H11_4756 0.36 +0.2
56,194 - Ac3H11_4756 0.36 +0.6
56,194 - Ac3H11_4756 0.36 +0.3
56,194 - Ac3H11_4756 0.36 -3.2
56,527 + Ac3H11_4756 0.70 +0.3
56,527 + Ac3H11_4756 0.70 +0.2
56,527 + Ac3H11_4756 0.70 -2.0
56,528 - Ac3H11_4756 0.70 +1.0
56,528 - Ac3H11_4756 0.70 -0.6
56,528 - Ac3H11_4756 0.70 +1.8
56,528 - Ac3H11_4756 0.70 -0.8
56,540 - Ac3H11_4756 0.71 +0.2
56,604 + Ac3H11_4756 0.78 -0.6
56,605 - Ac3H11_4756 0.78 -0.1
56,812 + -1.4

Or see this region's nucleotide sequence