Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1984

Experiment: Nickel (II) chloride 0.6 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_1983 and Ac3H11_1984 are separated by 146 nucleotidesAc3H11_1984 and Ac3H11_1985 are separated by 166 nucleotides Ac3H11_1983 - Thymidylate kinase (EC 2.7.4.9), at 198,778 to 200,040 _1983 Ac3H11_1984 - tRNA pseudouridine synthase A (EC 4.2.1.70), at 200,187 to 200,981 _1984 Ac3H11_1985 - Metallo-beta-lactamase family protein, at 201,148 to 202,854 _1985 Position (kb) 200 201Strain fitness (log2 ratio) -2 -1 0 1at 199.301 kb on + strand, within Ac3H11_1983at 199.301 kb on + strand, within Ac3H11_1983at 199.301 kb on + strand, within Ac3H11_1983at 199.301 kb on + strand, within Ac3H11_1983at 199.301 kb on + strand, within Ac3H11_1983at 199.302 kb on - strand, within Ac3H11_1983at 199.302 kb on - strand, within Ac3H11_1983at 199.302 kb on - strand, within Ac3H11_1983at 199.302 kb on - strand, within Ac3H11_1983at 199.371 kb on - strand, within Ac3H11_1983at 199.371 kb on - strand, within Ac3H11_1983at 199.580 kb on + strand, within Ac3H11_1983at 199.580 kb on + strand, within Ac3H11_1983at 199.580 kb on + strand, within Ac3H11_1983at 199.580 kb on + strand, within Ac3H11_1983at 199.581 kb on - strand, within Ac3H11_1983at 199.581 kb on - strand, within Ac3H11_1983at 199.581 kb on - strand, within Ac3H11_1983at 199.581 kb on - strand, within Ac3H11_1983at 199.581 kb on - strand, within Ac3H11_1983at 199.581 kb on - strand, within Ac3H11_1983at 199.581 kb on - strand, within Ac3H11_1983at 199.581 kb on - strand, within Ac3H11_1983at 199.745 kb on + strand, within Ac3H11_1983at 199.746 kb on - strand, within Ac3H11_1983at 199.844 kb on + strand, within Ac3H11_1983at 199.844 kb on + strand, within Ac3H11_1983at 199.844 kb on + strand, within Ac3H11_1983at 199.845 kb on - strand, within Ac3H11_1983at 199.845 kb on - strand, within Ac3H11_1983at 199.845 kb on - strand, within Ac3H11_1983at 199.851 kb on - strand, within Ac3H11_1983at 199.883 kb on + strand, within Ac3H11_1983at 199.883 kb on + strand, within Ac3H11_1983at 199.883 kb on + strand, within Ac3H11_1983at 199.884 kb on - strand, within Ac3H11_1983at 199.937 kb on + strandat 199.937 kb on + strandat 200.068 kb on + strandat 200.068 kb on + strandat 200.068 kb on + strandat 200.154 kb on - strandat 200.213 kb on - strandat 200.533 kb on + strand, within Ac3H11_1984at 200.533 kb on + strand, within Ac3H11_1984at 200.533 kb on + strand, within Ac3H11_1984at 200.533 kb on + strand, within Ac3H11_1984at 200.534 kb on - strand, within Ac3H11_1984at 201.138 kb on + strandat 201.138 kb on + strandat 201.139 kb on - strandat 201.139 kb on - strandat 201.139 kb on - strandat 201.242 kb on + strandat 201.242 kb on + strandat 201.243 kb on - strandat 201.243 kb on - strandat 201.253 kb on + strandat 201.254 kb on - strandat 201.379 kb on + strand, within Ac3H11_1985at 201.379 kb on + strand, within Ac3H11_1985at 201.379 kb on + strand, within Ac3H11_1985at 201.379 kb on + strand, within Ac3H11_1985at 201.380 kb on - strand, within Ac3H11_1985at 201.380 kb on - strand, within Ac3H11_1985at 201.380 kb on - strand, within Ac3H11_1985at 201.380 kb on - strand, within Ac3H11_1985at 201.383 kb on + strand, within Ac3H11_1985at 201.383 kb on + strand, within Ac3H11_1985at 201.383 kb on + strand, within Ac3H11_1985at 201.383 kb on + strand, within Ac3H11_1985at 201.383 kb on + strand, within Ac3H11_1985at 201.383 kb on + strand, within Ac3H11_1985at 201.383 kb on + strand, within Ac3H11_1985at 201.383 kb on + strand, within Ac3H11_1985at 201.383 kb on + strand, within Ac3H11_1985at 201.383 kb on + strand, within Ac3H11_1985at 201.384 kb on - strand, within Ac3H11_1985at 201.384 kb on - strand, within Ac3H11_1985at 201.384 kb on - strand, within Ac3H11_1985at 201.384 kb on - strand, within Ac3H11_1985at 201.384 kb on - strand, within Ac3H11_1985at 201.384 kb on - strand, within Ac3H11_1985at 201.384 kb on - strand, within Ac3H11_1985at 201.384 kb on - strand, within Ac3H11_1985at 201.459 kb on - strand, within Ac3H11_1985at 201.604 kb on - strand, within Ac3H11_1985at 201.631 kb on - strand, within Ac3H11_1985at 201.661 kb on + strand, within Ac3H11_1985at 201.923 kb on + strand, within Ac3H11_1985at 201.923 kb on + strand, within Ac3H11_1985at 201.924 kb on - strand, within Ac3H11_1985at 201.924 kb on - strand, within Ac3H11_1985

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.6 mM
remove
199,301 + Ac3H11_1983 0.41 +0.8
199,301 + Ac3H11_1983 0.41 -0.7
199,301 + Ac3H11_1983 0.41 -1.8
199,301 + Ac3H11_1983 0.41 -0.6
199,301 + Ac3H11_1983 0.41 -0.6
199,302 - Ac3H11_1983 0.41 +0.1
199,302 - Ac3H11_1983 0.41 +0.2
199,302 - Ac3H11_1983 0.41 -0.8
199,302 - Ac3H11_1983 0.41 +0.2
199,371 - Ac3H11_1983 0.47 -0.5
199,371 - Ac3H11_1983 0.47 -1.6
199,580 + Ac3H11_1983 0.63 -0.1
199,580 + Ac3H11_1983 0.63 +0.3
199,580 + Ac3H11_1983 0.63 -0.4
199,580 + Ac3H11_1983 0.63 -0.3
199,581 - Ac3H11_1983 0.64 -0.4
199,581 - Ac3H11_1983 0.64 -0.2
199,581 - Ac3H11_1983 0.64 +0.3
199,581 - Ac3H11_1983 0.64 +0.4
199,581 - Ac3H11_1983 0.64 -0.2
199,581 - Ac3H11_1983 0.64 -1.1
199,581 - Ac3H11_1983 0.64 +1.0
199,581 - Ac3H11_1983 0.64 -0.1
199,745 + Ac3H11_1983 0.77 -0.3
199,746 - Ac3H11_1983 0.77 -1.5
199,844 + Ac3H11_1983 0.84 -2.4
199,844 + Ac3H11_1983 0.84 -0.1
199,844 + Ac3H11_1983 0.84 -0.8
199,845 - Ac3H11_1983 0.84 -0.6
199,845 - Ac3H11_1983 0.84 -0.4
199,845 - Ac3H11_1983 0.84 -0.1
199,851 - Ac3H11_1983 0.85 -1.1
199,883 + Ac3H11_1983 0.87 -1.0
199,883 + Ac3H11_1983 0.87 +0.3
199,883 + Ac3H11_1983 0.87 +0.4
199,884 - Ac3H11_1983 0.88 +0.8
199,937 + -0.6
199,937 + +0.8
200,068 + -0.1
200,068 + -0.8
200,068 + +0.2
200,154 - -1.9
200,213 - +1.0
200,533 + Ac3H11_1984 0.44 -0.5
200,533 + Ac3H11_1984 0.44 -1.3
200,533 + Ac3H11_1984 0.44 -0.5
200,533 + Ac3H11_1984 0.44 +0.4
200,534 - Ac3H11_1984 0.44 -0.5
201,138 + +0.3
201,138 + -0.4
201,139 - +0.2
201,139 - -0.2
201,139 - -0.0
201,242 + -1.3
201,242 + +0.6
201,243 - -1.5
201,243 - +0.2
201,253 + -0.5
201,254 - -0.1
201,379 + Ac3H11_1985 0.14 +0.8
201,379 + Ac3H11_1985 0.14 -0.7
201,379 + Ac3H11_1985 0.14 +0.6
201,379 + Ac3H11_1985 0.14 -0.1
201,380 - Ac3H11_1985 0.14 +0.3
201,380 - Ac3H11_1985 0.14 +0.2
201,380 - Ac3H11_1985 0.14 +0.1
201,380 - Ac3H11_1985 0.14 +0.8
201,383 + Ac3H11_1985 0.14 +0.1
201,383 + Ac3H11_1985 0.14 +0.0
201,383 + Ac3H11_1985 0.14 +0.1
201,383 + Ac3H11_1985 0.14 -0.2
201,383 + Ac3H11_1985 0.14 +0.3
201,383 + Ac3H11_1985 0.14 -0.7
201,383 + Ac3H11_1985 0.14 -0.7
201,383 + Ac3H11_1985 0.14 -0.1
201,383 + Ac3H11_1985 0.14 +0.1
201,383 + Ac3H11_1985 0.14 +0.3
201,384 - Ac3H11_1985 0.14 +0.0
201,384 - Ac3H11_1985 0.14 +0.1
201,384 - Ac3H11_1985 0.14 -0.3
201,384 - Ac3H11_1985 0.14 -0.6
201,384 - Ac3H11_1985 0.14 +0.5
201,384 - Ac3H11_1985 0.14 -0.2
201,384 - Ac3H11_1985 0.14 -0.5
201,384 - Ac3H11_1985 0.14 -0.5
201,459 - Ac3H11_1985 0.18 +0.3
201,604 - Ac3H11_1985 0.27 +0.2
201,631 - Ac3H11_1985 0.28 +0.5
201,661 + Ac3H11_1985 0.30 +0.4
201,923 + Ac3H11_1985 0.45 -1.1
201,923 + Ac3H11_1985 0.45 -0.4
201,924 - Ac3H11_1985 0.45 -0.1
201,924 - Ac3H11_1985 0.45 +0.8

Or see this region's nucleotide sequence