Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1935

Experiment: Nickel (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1934 and Ac3H11_1935 are separated by 204 nucleotidesAc3H11_1935 and Ac3H11_1936 are separated by 7 nucleotidesAc3H11_1936 and Ac3H11_1937 overlap by 4 nucleotides Ac3H11_1934 - Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1), at 148,982 to 150,148 _1934 Ac3H11_1935 - Acetyl-coenzyme A synthetase (EC 6.2.1.1), at 150,353 to 152,209 _1935 Ac3H11_1936 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 152,217 to 153,035 _1936 Ac3H11_1937 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 153,032 to 153,871 _1937 Position (kb) 150 151 152 153Strain fitness (log2 ratio) -3 -2 -1 0 1at 149.373 kb on + strand, within Ac3H11_1934at 149.374 kb on - strand, within Ac3H11_1934at 149.535 kb on + strand, within Ac3H11_1934at 149.535 kb on + strand, within Ac3H11_1934at 149.535 kb on + strand, within Ac3H11_1934at 149.535 kb on + strand, within Ac3H11_1934at 149.536 kb on - strand, within Ac3H11_1934at 149.536 kb on - strand, within Ac3H11_1934at 149.625 kb on + strand, within Ac3H11_1934at 149.626 kb on - strand, within Ac3H11_1934at 149.626 kb on - strand, within Ac3H11_1934at 149.626 kb on - strand, within Ac3H11_1934at 149.626 kb on - strand, within Ac3H11_1934at 149.694 kb on + strand, within Ac3H11_1934at 149.694 kb on + strand, within Ac3H11_1934at 149.694 kb on + strand, within Ac3H11_1934at 149.694 kb on + strand, within Ac3H11_1934at 149.695 kb on - strand, within Ac3H11_1934at 149.695 kb on - strand, within Ac3H11_1934at 149.695 kb on - strand, within Ac3H11_1934at 149.697 kb on + strand, within Ac3H11_1934at 149.697 kb on + strand, within Ac3H11_1934at 149.697 kb on + strand, within Ac3H11_1934at 149.697 kb on + strand, within Ac3H11_1934at 149.698 kb on - strand, within Ac3H11_1934at 149.698 kb on - strand, within Ac3H11_1934at 149.698 kb on - strand, within Ac3H11_1934at 149.698 kb on - strand, within Ac3H11_1934at 149.698 kb on - strand, within Ac3H11_1934at 149.698 kb on - strand, within Ac3H11_1934at 149.715 kb on + strand, within Ac3H11_1934at 149.739 kb on + strand, within Ac3H11_1934at 149.739 kb on + strand, within Ac3H11_1934at 149.739 kb on + strand, within Ac3H11_1934at 149.739 kb on + strand, within Ac3H11_1934at 149.739 kb on + strand, within Ac3H11_1934at 149.739 kb on + strand, within Ac3H11_1934at 149.740 kb on - strand, within Ac3H11_1934at 149.905 kb on - strand, within Ac3H11_1934at 149.923 kb on + strand, within Ac3H11_1934at 149.924 kb on - strand, within Ac3H11_1934at 149.924 kb on - strand, within Ac3H11_1934at 150.194 kb on - strandat 150.195 kb on + strandat 150.195 kb on + strandat 150.195 kb on + strandat 150.196 kb on - strandat 150.196 kb on - strandat 150.354 kb on + strandat 150.360 kb on + strandat 150.361 kb on - strandat 150.361 kb on - strandat 150.361 kb on - strandat 150.384 kb on + strandat 150.385 kb on - strandat 150.570 kb on + strand, within Ac3H11_1935at 150.571 kb on - strand, within Ac3H11_1935at 150.649 kb on - strand, within Ac3H11_1935at 150.687 kb on + strand, within Ac3H11_1935at 150.687 kb on + strand, within Ac3H11_1935at 150.687 kb on + strand, within Ac3H11_1935at 150.688 kb on - strand, within Ac3H11_1935at 150.688 kb on - strand, within Ac3H11_1935at 150.688 kb on - strand, within Ac3H11_1935at 150.688 kb on - strand, within Ac3H11_1935at 150.877 kb on - strand, within Ac3H11_1935at 151.032 kb on - strand, within Ac3H11_1935at 151.062 kb on + strand, within Ac3H11_1935at 151.062 kb on + strand, within Ac3H11_1935at 151.260 kb on + strand, within Ac3H11_1935at 151.315 kb on - strand, within Ac3H11_1935at 151.315 kb on - strand, within Ac3H11_1935at 151.425 kb on + strand, within Ac3H11_1935at 151.425 kb on + strand, within Ac3H11_1935at 151.539 kb on + strand, within Ac3H11_1935at 151.540 kb on - strand, within Ac3H11_1935at 151.600 kb on - strand, within Ac3H11_1935at 151.600 kb on - strand, within Ac3H11_1935at 151.863 kb on + strand, within Ac3H11_1935at 151.863 kb on + strand, within Ac3H11_1935at 151.893 kb on + strand, within Ac3H11_1935at 151.894 kb on - strand, within Ac3H11_1935at 152.182 kb on + strandat 152.209 kb on + strandat 152.210 kb on - strandat 152.285 kb on - strandat 152.362 kb on + strand, within Ac3H11_1936at 152.362 kb on + strand, within Ac3H11_1936at 152.362 kb on + strand, within Ac3H11_1936at 152.363 kb on - strand, within Ac3H11_1936at 152.369 kb on - strand, within Ac3H11_1936at 152.369 kb on - strand, within Ac3H11_1936at 152.577 kb on + strand, within Ac3H11_1936at 152.578 kb on - strand, within Ac3H11_1936at 152.621 kb on - strand, within Ac3H11_1936at 152.674 kb on + strand, within Ac3H11_1936at 152.675 kb on - strand, within Ac3H11_1936at 152.675 kb on - strand, within Ac3H11_1936at 152.675 kb on - strand, within Ac3H11_1936at 152.997 kb on + strandat 153.102 kb on + strandat 153.102 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.6 mM
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149,373 + Ac3H11_1934 0.34 +0.2
149,374 - Ac3H11_1934 0.34 -1.0
149,535 + Ac3H11_1934 0.47 +0.2
149,535 + Ac3H11_1934 0.47 +0.3
149,535 + Ac3H11_1934 0.47 +0.6
149,535 + Ac3H11_1934 0.47 -3.0
149,536 - Ac3H11_1934 0.47 -0.6
149,536 - Ac3H11_1934 0.47 +0.9
149,625 + Ac3H11_1934 0.55 +0.6
149,626 - Ac3H11_1934 0.55 +0.5
149,626 - Ac3H11_1934 0.55 -1.0
149,626 - Ac3H11_1934 0.55 +0.6
149,626 - Ac3H11_1934 0.55 -0.4
149,694 + Ac3H11_1934 0.61 +0.1
149,694 + Ac3H11_1934 0.61 +0.1
149,694 + Ac3H11_1934 0.61 -2.2
149,694 + Ac3H11_1934 0.61 +0.2
149,695 - Ac3H11_1934 0.61 -0.2
149,695 - Ac3H11_1934 0.61 +0.9
149,695 - Ac3H11_1934 0.61 -0.5
149,697 + Ac3H11_1934 0.61 -1.0
149,697 + Ac3H11_1934 0.61 +0.2
149,697 + Ac3H11_1934 0.61 +1.2
149,697 + Ac3H11_1934 0.61 +0.3
149,698 - Ac3H11_1934 0.61 +1.1
149,698 - Ac3H11_1934 0.61 -0.1
149,698 - Ac3H11_1934 0.61 -1.2
149,698 - Ac3H11_1934 0.61 -0.4
149,698 - Ac3H11_1934 0.61 -1.0
149,698 - Ac3H11_1934 0.61 +0.6
149,715 + Ac3H11_1934 0.63 +1.0
149,739 + Ac3H11_1934 0.65 +0.7
149,739 + Ac3H11_1934 0.65 +0.7
149,739 + Ac3H11_1934 0.65 +0.3
149,739 + Ac3H11_1934 0.65 -0.6
149,739 + Ac3H11_1934 0.65 -1.4
149,739 + Ac3H11_1934 0.65 +0.3
149,740 - Ac3H11_1934 0.65 +1.0
149,905 - Ac3H11_1934 0.79 +0.6
149,923 + Ac3H11_1934 0.81 +1.1
149,924 - Ac3H11_1934 0.81 +0.9
149,924 - Ac3H11_1934 0.81 -1.2
150,194 - -1.3
150,195 + +0.1
150,195 + -1.3
150,195 + -1.2
150,196 - +0.1
150,196 - -1.1
150,354 + +0.1
150,360 + +1.3
150,361 - -0.1
150,361 - -0.4
150,361 - +0.1
150,384 + +0.2
150,385 - -2.2
150,570 + Ac3H11_1935 0.12 +0.5
150,571 - Ac3H11_1935 0.12 +1.0
150,649 - Ac3H11_1935 0.16 -0.2
150,687 + Ac3H11_1935 0.18 -1.2
150,687 + Ac3H11_1935 0.18 -0.7
150,687 + Ac3H11_1935 0.18 +0.4
150,688 - Ac3H11_1935 0.18 -0.1
150,688 - Ac3H11_1935 0.18 -0.0
150,688 - Ac3H11_1935 0.18 -2.0
150,688 - Ac3H11_1935 0.18 +1.2
150,877 - Ac3H11_1935 0.28 +0.0
151,032 - Ac3H11_1935 0.37 -1.1
151,062 + Ac3H11_1935 0.38 +0.0
151,062 + Ac3H11_1935 0.38 -0.6
151,260 + Ac3H11_1935 0.49 +0.8
151,315 - Ac3H11_1935 0.52 -0.3
151,315 - Ac3H11_1935 0.52 -2.2
151,425 + Ac3H11_1935 0.58 -0.9
151,425 + Ac3H11_1935 0.58 +0.8
151,539 + Ac3H11_1935 0.64 +0.1
151,540 - Ac3H11_1935 0.64 -0.5
151,600 - Ac3H11_1935 0.67 +0.6
151,600 - Ac3H11_1935 0.67 +0.1
151,863 + Ac3H11_1935 0.81 -0.1
151,863 + Ac3H11_1935 0.81 -0.7
151,893 + Ac3H11_1935 0.83 -0.1
151,894 - Ac3H11_1935 0.83 -0.0
152,182 + -0.3
152,209 + +0.5
152,210 - -0.3
152,285 - +0.1
152,362 + Ac3H11_1936 0.18 +0.5
152,362 + Ac3H11_1936 0.18 +0.0
152,362 + Ac3H11_1936 0.18 -1.4
152,363 - Ac3H11_1936 0.18 -1.2
152,369 - Ac3H11_1936 0.19 -0.5
152,369 - Ac3H11_1936 0.19 +0.0
152,577 + Ac3H11_1936 0.44 -0.2
152,578 - Ac3H11_1936 0.44 +1.3
152,621 - Ac3H11_1936 0.49 +0.6
152,674 + Ac3H11_1936 0.56 +0.6
152,675 - Ac3H11_1936 0.56 +1.1
152,675 - Ac3H11_1936 0.56 +0.4
152,675 - Ac3H11_1936 0.56 +0.8
152,997 + -1.5
153,102 + +0.2
153,102 + +1.2

Or see this region's nucleotide sequence