Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1641

Experiment: Nickel (II) chloride 0.6 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_1640 and Ac3H11_1641 are separated by 151 nucleotidesAc3H11_1641 and Ac3H11_1642 are separated by 12 nucleotides Ac3H11_1640 - Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4), at 232,203 to 233,105 _1640 Ac3H11_1641 - Aspartate racemase (EC 5.1.1.13), at 233,257 to 234,051 _1641 Ac3H11_1642 - Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4), at 234,064 to 234,954 _1642 Position (kb) 233 234 235Strain fitness (log2 ratio) -3 -2 -1 0 1at 232.315 kb on + strand, within Ac3H11_1640at 232.483 kb on + strand, within Ac3H11_1640at 232.484 kb on - strand, within Ac3H11_1640at 232.918 kb on + strand, within Ac3H11_1640at 232.918 kb on + strand, within Ac3H11_1640at 232.945 kb on + strand, within Ac3H11_1640at 232.945 kb on + strand, within Ac3H11_1640at 232.945 kb on + strand, within Ac3H11_1640at 232.945 kb on + strand, within Ac3H11_1640at 232.945 kb on + strand, within Ac3H11_1640at 232.945 kb on + strand, within Ac3H11_1640at 232.945 kb on + strand, within Ac3H11_1640at 232.945 kb on + strand, within Ac3H11_1640at 232.945 kb on + strand, within Ac3H11_1640at 232.945 kb on + strand, within Ac3H11_1640at 232.945 kb on + strand, within Ac3H11_1640at 232.946 kb on - strand, within Ac3H11_1640at 232.946 kb on - strand, within Ac3H11_1640at 232.946 kb on - strand, within Ac3H11_1640at 232.946 kb on - strand, within Ac3H11_1640at 232.946 kb on - strand, within Ac3H11_1640at 232.946 kb on - strand, within Ac3H11_1640at 232.946 kb on - strand, within Ac3H11_1640at 232.946 kb on - strand, within Ac3H11_1640at 232.946 kb on - strand, within Ac3H11_1640at 232.946 kb on - strand, within Ac3H11_1640at 233.282 kb on + strandat 233.283 kb on - strandat 233.283 kb on - strandat 233.283 kb on - strandat 233.301 kb on - strandat 233.301 kb on - strandat 233.301 kb on - strandat 233.301 kb on - strandat 233.353 kb on + strand, within Ac3H11_1641at 233.354 kb on - strand, within Ac3H11_1641at 233.354 kb on - strand, within Ac3H11_1641at 233.483 kb on + strand, within Ac3H11_1641at 233.484 kb on - strand, within Ac3H11_1641at 233.484 kb on - strand, within Ac3H11_1641at 233.507 kb on + strand, within Ac3H11_1641at 233.507 kb on + strand, within Ac3H11_1641at 233.507 kb on + strand, within Ac3H11_1641at 233.507 kb on + strand, within Ac3H11_1641at 233.508 kb on - strand, within Ac3H11_1641at 233.508 kb on - strand, within Ac3H11_1641at 233.508 kb on - strand, within Ac3H11_1641at 233.588 kb on + strand, within Ac3H11_1641at 233.588 kb on + strand, within Ac3H11_1641at 233.603 kb on + strand, within Ac3H11_1641at 233.604 kb on - strand, within Ac3H11_1641at 233.894 kb on + strand, within Ac3H11_1641at 233.916 kb on + strand, within Ac3H11_1641at 234.066 kb on - strandat 234.066 kb on - strandat 234.174 kb on + strand, within Ac3H11_1642at 234.175 kb on - strand, within Ac3H11_1642at 234.175 kb on - strand, within Ac3H11_1642at 234.175 kb on - strand, within Ac3H11_1642at 234.176 kb on + strand, within Ac3H11_1642at 234.176 kb on + strand, within Ac3H11_1642at 234.177 kb on - strand, within Ac3H11_1642at 234.273 kb on - strand, within Ac3H11_1642at 234.273 kb on - strand, within Ac3H11_1642at 234.273 kb on - strand, within Ac3H11_1642at 234.461 kb on + strand, within Ac3H11_1642at 234.461 kb on + strand, within Ac3H11_1642at 234.462 kb on - strand, within Ac3H11_1642at 234.499 kb on - strand, within Ac3H11_1642at 234.531 kb on - strand, within Ac3H11_1642at 234.531 kb on - strand, within Ac3H11_1642at 234.531 kb on - strand, within Ac3H11_1642at 234.531 kb on - strand, within Ac3H11_1642at 234.578 kb on + strand, within Ac3H11_1642at 234.584 kb on + strand, within Ac3H11_1642at 234.584 kb on + strand, within Ac3H11_1642at 234.584 kb on + strand, within Ac3H11_1642at 234.584 kb on + strand, within Ac3H11_1642at 234.584 kb on + strand, within Ac3H11_1642at 234.584 kb on + strand, within Ac3H11_1642at 234.585 kb on - strand, within Ac3H11_1642at 234.585 kb on - strand, within Ac3H11_1642at 234.585 kb on - strand, within Ac3H11_1642at 234.809 kb on + strand, within Ac3H11_1642at 234.810 kb on - strand, within Ac3H11_1642

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.6 mM
remove
232,315 + Ac3H11_1640 0.12 -1.2
232,483 + Ac3H11_1640 0.31 +0.6
232,484 - Ac3H11_1640 0.31 +0.1
232,918 + Ac3H11_1640 0.79 -1.8
232,918 + Ac3H11_1640 0.79 +0.2
232,945 + Ac3H11_1640 0.82 -0.7
232,945 + Ac3H11_1640 0.82 -1.4
232,945 + Ac3H11_1640 0.82 -0.6
232,945 + Ac3H11_1640 0.82 +0.6
232,945 + Ac3H11_1640 0.82 +1.7
232,945 + Ac3H11_1640 0.82 +0.6
232,945 + Ac3H11_1640 0.82 -0.3
232,945 + Ac3H11_1640 0.82 -0.2
232,945 + Ac3H11_1640 0.82 +0.4
232,945 + Ac3H11_1640 0.82 -0.6
232,945 + Ac3H11_1640 0.82 -0.3
232,946 - Ac3H11_1640 0.82 +0.1
232,946 - Ac3H11_1640 0.82 -0.7
232,946 - Ac3H11_1640 0.82 -0.5
232,946 - Ac3H11_1640 0.82 -0.3
232,946 - Ac3H11_1640 0.82 -0.2
232,946 - Ac3H11_1640 0.82 +0.1
232,946 - Ac3H11_1640 0.82 -2.6
232,946 - Ac3H11_1640 0.82 -0.8
232,946 - Ac3H11_1640 0.82 -0.2
232,946 - Ac3H11_1640 0.82 -1.4
233,282 + +0.2
233,283 - -1.6
233,283 - +0.8
233,283 - -2.8
233,301 - +0.4
233,301 - +0.5
233,301 - +0.3
233,301 - +0.1
233,353 + Ac3H11_1641 0.12 +0.1
233,354 - Ac3H11_1641 0.12 -0.6
233,354 - Ac3H11_1641 0.12 -0.1
233,483 + Ac3H11_1641 0.28 +0.5
233,484 - Ac3H11_1641 0.29 -0.2
233,484 - Ac3H11_1641 0.29 -0.6
233,507 + Ac3H11_1641 0.31 -0.1
233,507 + Ac3H11_1641 0.31 -0.7
233,507 + Ac3H11_1641 0.31 +0.3
233,507 + Ac3H11_1641 0.31 +0.1
233,508 - Ac3H11_1641 0.32 -0.6
233,508 - Ac3H11_1641 0.32 -0.0
233,508 - Ac3H11_1641 0.32 +0.4
233,588 + Ac3H11_1641 0.42 +0.0
233,588 + Ac3H11_1641 0.42 +0.1
233,603 + Ac3H11_1641 0.44 -0.8
233,604 - Ac3H11_1641 0.44 +0.1
233,894 + Ac3H11_1641 0.80 -0.7
233,916 + Ac3H11_1641 0.83 +0.0
234,066 - -1.4
234,066 - -0.1
234,174 + Ac3H11_1642 0.12 +0.5
234,175 - Ac3H11_1642 0.12 -1.8
234,175 - Ac3H11_1642 0.12 +0.2
234,175 - Ac3H11_1642 0.12 -0.4
234,176 + Ac3H11_1642 0.13 -2.5
234,176 + Ac3H11_1642 0.13 -0.1
234,177 - Ac3H11_1642 0.13 +1.0
234,273 - Ac3H11_1642 0.23 +0.4
234,273 - Ac3H11_1642 0.23 +0.8
234,273 - Ac3H11_1642 0.23 -0.6
234,461 + Ac3H11_1642 0.45 -0.9
234,461 + Ac3H11_1642 0.45 +0.6
234,462 - Ac3H11_1642 0.45 +1.0
234,499 - Ac3H11_1642 0.49 +0.1
234,531 - Ac3H11_1642 0.52 +0.0
234,531 - Ac3H11_1642 0.52 +0.1
234,531 - Ac3H11_1642 0.52 -0.7
234,531 - Ac3H11_1642 0.52 -1.2
234,578 + Ac3H11_1642 0.58 +0.9
234,584 + Ac3H11_1642 0.58 +0.6
234,584 + Ac3H11_1642 0.58 +0.1
234,584 + Ac3H11_1642 0.58 -0.2
234,584 + Ac3H11_1642 0.58 -0.3
234,584 + Ac3H11_1642 0.58 -0.0
234,584 + Ac3H11_1642 0.58 +1.1
234,585 - Ac3H11_1642 0.58 +0.3
234,585 - Ac3H11_1642 0.58 -0.9
234,585 - Ac3H11_1642 0.58 -0.6
234,809 + Ac3H11_1642 0.84 -1.7
234,810 - Ac3H11_1642 0.84 +0.0

Or see this region's nucleotide sequence