Experiment: Nickel (II) chloride 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS17290 and AZOBR_RS17295 are separated by 88 nucleotides AZOBR_RS17295 and AZOBR_RS17300 are separated by 154 nucleotides AZOBR_RS17300 and AZOBR_RS17305 are separated by 1 nucleotides AZOBR_RS17305 and AZOBR_RS17310 are separated by 99 nucleotides AZOBR_RS17310 and AZOBR_RS17315 are separated by 35 nucleotides AZOBR_RS17315 and AZOBR_RS17320 are separated by 1 nucleotides AZOBR_RS17320 and AZOBR_RS17325 are separated by 153 nucleotides
AZOBR_RS17290: AZOBR_RS17290 - membrane protein, at 629,294 to 629,767
_RS17290
AZOBR_RS17295: AZOBR_RS17295 - hypothetical protein, at 629,856 to 631,229
_RS17295
AZOBR_RS17300: AZOBR_RS17300 - tRNA-Thr, at 631,384 to 631,458
_RS17300
AZOBR_RS17305: AZOBR_RS17305 - tRNA-Ala, at 631,460 to 631,535
_RS17305
AZOBR_RS17310: AZOBR_RS17310 - tRNA-Asp, at 631,635 to 631,711
_RS17310
AZOBR_RS17315: AZOBR_RS17315 - tRNA-Val, at 631,747 to 631,821
_RS17315
AZOBR_RS17320: AZOBR_RS17320 - tRNA-Gln, at 631,823 to 631,896
_RS17320
AZOBR_RS17325: AZOBR_RS17325 - hypothetical protein, at 632,050 to 632,259
_RS17325
Position (kb) 629
630
631
632 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 628.906 kb on + strand at 629.006 kb on - strand at 629.006 kb on - strand at 629.006 kb on - strand at 629.077 kb on + strand at 629.077 kb on + strand at 629.077 kb on + strand at 629.078 kb on - strand at 629.166 kb on - strand at 629.210 kb on + strand at 629.211 kb on - strand at 629.211 kb on - strand at 629.239 kb on + strand at 629.252 kb on + strand at 629.252 kb on + strand at 629.252 kb on + strand at 629.252 kb on + strand at 629.253 kb on - strand at 629.253 kb on - strand at 629.253 kb on - strand at 629.267 kb on + strand at 629.267 kb on + strand at 629.267 kb on + strand at 629.268 kb on - strand at 629.269 kb on + strand at 629.270 kb on - strand at 629.486 kb on + strand, within AZOBR_RS17290 at 629.487 kb on - strand, within AZOBR_RS17290 at 629.663 kb on + strand, within AZOBR_RS17290 at 629.664 kb on - strand, within AZOBR_RS17290 at 629.690 kb on + strand, within AZOBR_RS17290 at 629.765 kb on + strand at 629.765 kb on + strand at 629.766 kb on - strand at 629.969 kb on - strand at 630.076 kb on + strand, within AZOBR_RS17295 at 630.076 kb on + strand, within AZOBR_RS17295 at 630.077 kb on - strand, within AZOBR_RS17295 at 630.077 kb on - strand, within AZOBR_RS17295 at 630.077 kb on - strand, within AZOBR_RS17295 at 630.077 kb on - strand, within AZOBR_RS17295 at 630.077 kb on - strand, within AZOBR_RS17295 at 630.077 kb on - strand, within AZOBR_RS17295 at 630.077 kb on - strand, within AZOBR_RS17295 at 630.494 kb on - strand, within AZOBR_RS17295 at 630.494 kb on - strand, within AZOBR_RS17295 at 630.494 kb on - strand, within AZOBR_RS17295 at 630.535 kb on + strand, within AZOBR_RS17295 at 630.535 kb on + strand, within AZOBR_RS17295 at 630.536 kb on - strand, within AZOBR_RS17295 at 630.557 kb on - strand, within AZOBR_RS17295 at 630.637 kb on - strand, within AZOBR_RS17295 at 630.754 kb on + strand, within AZOBR_RS17295 at 630.820 kb on + strand, within AZOBR_RS17295 at 630.821 kb on - strand, within AZOBR_RS17295 at 630.821 kb on - strand, within AZOBR_RS17295 at 630.821 kb on - strand, within AZOBR_RS17295 at 630.821 kb on - strand, within AZOBR_RS17295 at 630.954 kb on - strand, within AZOBR_RS17295 at 630.958 kb on + strand, within AZOBR_RS17295 at 630.958 kb on + strand, within AZOBR_RS17295 at 630.959 kb on - strand, within AZOBR_RS17295 at 630.959 kb on - strand, within AZOBR_RS17295 at 630.959 kb on - strand, within AZOBR_RS17295 at 631.207 kb on - strand at 631.392 kb on - strand, within AZOBR_RS17300 at 631.730 kb on + strand at 631.773 kb on + strand, within AZOBR_RS17315 at 631.841 kb on + strand, within AZOBR_RS17320 at 632.131 kb on + strand, within AZOBR_RS17325 at 632.131 kb on + strand, within AZOBR_RS17325 at 632.131 kb on + strand, within AZOBR_RS17325 at 632.131 kb on + strand at 632.132 kb on - strand, within AZOBR_RS17325 at 632.168 kb on - strand, within AZOBR_RS17325 at 632.168 kb on - strand, within AZOBR_RS17325
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.5 mM remove 628,906 + +1.5 629,006 - +0.3 629,006 - -0.8 629,006 - +0.3 629,077 + +1.3 629,077 + +0.6 629,077 + +0.5 629,078 - +0.2 629,166 - -0.1 629,210 + -1.0 629,211 - -0.2 629,211 - -0.2 629,239 + -0.8 629,252 + +0.3 629,252 + -0.3 629,252 + -0.1 629,252 + -1.1 629,253 - -0.1 629,253 - -0.9 629,253 - -0.3 629,267 + -0.2 629,267 + -0.0 629,267 + -0.2 629,268 - -0.1 629,269 + -0.5 629,270 - +0.1 629,486 + AZOBR_RS17290 0.41 -0.6 629,487 - AZOBR_RS17290 0.41 -0.7 629,663 + AZOBR_RS17290 0.78 +0.1 629,664 - AZOBR_RS17290 0.78 -0.3 629,690 + AZOBR_RS17290 0.84 -1.0 629,765 + -0.1 629,765 + +0.2 629,766 - -0.0 629,969 - -0.7 630,076 + AZOBR_RS17295 0.16 -1.2 630,076 + AZOBR_RS17295 0.16 -0.2 630,077 - AZOBR_RS17295 0.16 -0.2 630,077 - AZOBR_RS17295 0.16 -0.4 630,077 - AZOBR_RS17295 0.16 -0.8 630,077 - AZOBR_RS17295 0.16 -0.4 630,077 - AZOBR_RS17295 0.16 -2.8 630,077 - AZOBR_RS17295 0.16 -0.4 630,077 - AZOBR_RS17295 0.16 +0.1 630,494 - AZOBR_RS17295 0.46 -0.5 630,494 - AZOBR_RS17295 0.46 -1.3 630,494 - AZOBR_RS17295 0.46 -1.1 630,535 + AZOBR_RS17295 0.49 -1.2 630,535 + AZOBR_RS17295 0.49 -0.5 630,536 - AZOBR_RS17295 0.49 -0.4 630,557 - AZOBR_RS17295 0.51 -0.3 630,637 - AZOBR_RS17295 0.57 -0.8 630,754 + AZOBR_RS17295 0.65 -0.2 630,820 + AZOBR_RS17295 0.70 -0.3 630,821 - AZOBR_RS17295 0.70 -0.7 630,821 - AZOBR_RS17295 0.70 -0.3 630,821 - AZOBR_RS17295 0.70 -0.4 630,821 - AZOBR_RS17295 0.70 -1.0 630,954 - AZOBR_RS17295 0.80 -1.5 630,958 + AZOBR_RS17295 0.80 -0.5 630,958 + AZOBR_RS17295 0.80 +0.5 630,959 - AZOBR_RS17295 0.80 -1.0 630,959 - AZOBR_RS17295 0.80 +0.9 630,959 - AZOBR_RS17295 0.80 +0.0 631,207 - +0.1 631,392 - AZOBR_RS17300 0.11 -0.1 631,730 + +0.8 631,773 + AZOBR_RS17315 0.35 +1.0 631,841 + AZOBR_RS17320 0.24 +0.7 632,131 + AZOBR_RS17325 0.39 +0.0 632,131 + AZOBR_RS17325 0.39 -2.7 632,131 + AZOBR_RS17325 0.39 +1.0 632,131 + +0.2 632,132 - AZOBR_RS17325 0.39 +0.8 632,168 - AZOBR_RS17325 0.56 +0.1 632,168 - AZOBR_RS17325 0.56 -0.1
Or see this region's nucleotide sequence