Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS15690

Experiment: Nickel (II) chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS15685 and AZOBR_RS15690 are separated by 211 nucleotidesAZOBR_RS15690 and AZOBR_RS15695 are separated by 25 nucleotides AZOBR_RS15685: AZOBR_RS15685 - ABC transporter substrate-binding protein, at 271,978 to 272,778 _RS15685 AZOBR_RS15690: AZOBR_RS15690 - glutamine ABC transporter ATP-binding protein, at 272,990 to 273,709 _RS15690 AZOBR_RS15695: AZOBR_RS15695 - dihydrofolate reductase, at 273,735 to 274,673 _RS15695 Position (kb) 272 273 274Strain fitness (log2 ratio) -1 0 1at 272.251 kb on + strand, within AZOBR_RS15685at 272.374 kb on - strand, within AZOBR_RS15685at 272.602 kb on + strand, within AZOBR_RS15685at 272.602 kb on + strand, within AZOBR_RS15685at 272.603 kb on - strand, within AZOBR_RS15685at 272.776 kb on + strandat 272.776 kb on + strandat 272.785 kb on - strandat 272.897 kb on + strandat 272.897 kb on + strandat 272.897 kb on + strandat 272.898 kb on - strandat 272.902 kb on - strandat 272.933 kb on + strandat 272.933 kb on + strandat 273.012 kb on - strandat 273.801 kb on + strandat 274.581 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.5 mM
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272,251 + AZOBR_RS15685 0.34 -0.1
272,374 - AZOBR_RS15685 0.49 +0.0
272,602 + AZOBR_RS15685 0.78 -0.3
272,602 + AZOBR_RS15685 0.78 +0.1
272,603 - AZOBR_RS15685 0.78 -0.7
272,776 + +0.0
272,776 + -0.5
272,785 - -0.5
272,897 + +0.2
272,897 + -0.1
272,897 + -0.2
272,898 - -1.3
272,902 - +0.2
272,933 + -1.1
272,933 + +0.2
273,012 - +0.3
273,801 + -0.1
274,581 - +0.0

Or see this region's nucleotide sequence