Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005412

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_005411 and ABIE53_005412 overlap by 4 nucleotidesABIE53_005412 and ABIE53_005413 overlap by 23 nucleotides ABIE53_005411: ABIE53_005411 - type I restriction enzyme S subunit, at 1,685,078 to 1,686,265 _005411 ABIE53_005412: ABIE53_005412 - type I restriction-modification system DNA methylase subunit, at 1,686,262 to 1,686,435 _005412 ABIE53_005413: ABIE53_005413 - type I restriction enzyme M protein, at 1,686,413 to 1,687,801 _005413 Position (kb) 1686 1687Strain fitness (log2 ratio) -2 -1 0 1 2at 1685.335 kb on - strand, within ABIE53_005411at 1685.344 kb on + strand, within ABIE53_005411at 1685.345 kb on - strand, within ABIE53_005411at 1685.360 kb on + strand, within ABIE53_005411at 1685.360 kb on + strand, within ABIE53_005411at 1685.422 kb on + strand, within ABIE53_005411at 1685.422 kb on + strand, within ABIE53_005411at 1685.422 kb on + strand, within ABIE53_005411at 1685.422 kb on + strand, within ABIE53_005411at 1685.423 kb on - strand, within ABIE53_005411at 1685.423 kb on - strand, within ABIE53_005411at 1685.423 kb on - strand, within ABIE53_005411at 1685.423 kb on - strand, within ABIE53_005411at 1685.461 kb on + strand, within ABIE53_005411at 1685.462 kb on - strand, within ABIE53_005411at 1685.462 kb on - strand, within ABIE53_005411at 1685.462 kb on - strand, within ABIE53_005411at 1685.561 kb on - strand, within ABIE53_005411at 1685.562 kb on + strand, within ABIE53_005411at 1685.562 kb on + strand, within ABIE53_005411at 1685.562 kb on + strand, within ABIE53_005411at 1685.562 kb on + strand, within ABIE53_005411at 1685.563 kb on - strand, within ABIE53_005411at 1685.570 kb on + strand, within ABIE53_005411at 1685.596 kb on + strand, within ABIE53_005411at 1685.597 kb on - strand, within ABIE53_005411at 1685.622 kb on + strand, within ABIE53_005411at 1685.623 kb on - strand, within ABIE53_005411at 1685.727 kb on + strand, within ABIE53_005411at 1685.727 kb on + strand, within ABIE53_005411at 1685.727 kb on + strand, within ABIE53_005411at 1685.728 kb on - strand, within ABIE53_005411at 1685.728 kb on - strand, within ABIE53_005411at 1685.826 kb on + strand, within ABIE53_005411at 1685.827 kb on - strand, within ABIE53_005411at 1685.827 kb on - strand, within ABIE53_005411at 1685.858 kb on + strand, within ABIE53_005411at 1685.858 kb on + strand, within ABIE53_005411at 1685.858 kb on + strand, within ABIE53_005411at 1685.995 kb on + strand, within ABIE53_005411at 1686.044 kb on - strand, within ABIE53_005411at 1686.101 kb on + strand, within ABIE53_005411at 1686.153 kb on - strandat 1686.157 kb on - strandat 1686.157 kb on - strandat 1686.165 kb on - strandat 1686.374 kb on - strand, within ABIE53_005412at 1686.382 kb on - strand, within ABIE53_005412at 1686.390 kb on + strand, within ABIE53_005412at 1686.393 kb on + strand, within ABIE53_005412at 1686.634 kb on - strand, within ABIE53_005413at 1686.854 kb on + strand, within ABIE53_005413at 1686.855 kb on - strand, within ABIE53_005413at 1686.855 kb on - strand, within ABIE53_005413at 1686.855 kb on - strand, within ABIE53_005413at 1686.936 kb on + strand, within ABIE53_005413at 1686.936 kb on + strand, within ABIE53_005413at 1686.937 kb on - strand, within ABIE53_005413at 1686.981 kb on + strand, within ABIE53_005413at 1687.026 kb on + strand, within ABIE53_005413at 1687.047 kb on - strand, within ABIE53_005413at 1687.183 kb on - strand, within ABIE53_005413at 1687.183 kb on - strand, within ABIE53_005413at 1687.183 kb on - strand, within ABIE53_005413at 1687.213 kb on + strand, within ABIE53_005413at 1687.214 kb on - strand, within ABIE53_005413at 1687.214 kb on - strand, within ABIE53_005413at 1687.214 kb on - strand, within ABIE53_005413at 1687.214 kb on - strand, within ABIE53_005413at 1687.214 kb on - strand, within ABIE53_005413at 1687.214 kb on - strand, within ABIE53_005413at 1687.235 kb on - strand, within ABIE53_005413at 1687.339 kb on + strand, within ABIE53_005413at 1687.339 kb on + strand, within ABIE53_005413at 1687.339 kb on + strand, within ABIE53_005413at 1687.340 kb on - strand, within ABIE53_005413at 1687.340 kb on - strand, within ABIE53_005413at 1687.340 kb on - strand, within ABIE53_005413at 1687.340 kb on - strand, within ABIE53_005413at 1687.340 kb on - strand, within ABIE53_005413at 1687.340 kb on - strand, within ABIE53_005413at 1687.340 kb on - strand, within ABIE53_005413at 1687.340 kb on - strand, within ABIE53_005413at 1687.340 kb on - strand, within ABIE53_005413at 1687.340 kb on - strand, within ABIE53_005413at 1687.341 kb on + strand, within ABIE53_005413at 1687.341 kb on + strand, within ABIE53_005413at 1687.341 kb on + strand, within ABIE53_005413at 1687.341 kb on + strand, within ABIE53_005413at 1687.341 kb on + strand, within ABIE53_005413at 1687.341 kb on + strand, within ABIE53_005413at 1687.341 kb on + strand, within ABIE53_005413at 1687.342 kb on - strand, within ABIE53_005413at 1687.342 kb on - strand, within ABIE53_005413at 1687.342 kb on - strand, within ABIE53_005413at 1687.342 kb on - strand, within ABIE53_005413at 1687.342 kb on - strand, within ABIE53_005413at 1687.342 kb on - strand, within ABIE53_005413at 1687.342 kb on - strand, within ABIE53_005413at 1687.342 kb on - strand, within ABIE53_005413at 1687.342 kb on - strand, within ABIE53_005413at 1687.342 kb on - strand, within ABIE53_005413at 1687.342 kb on - strand, within ABIE53_005413at 1687.342 kb on - strand, within ABIE53_005413at 1687.342 kb on - strand, within ABIE53_005413at 1687.347 kb on + strand, within ABIE53_005413at 1687.412 kb on + strand, within ABIE53_005413

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,685,335 - ABIE53_005411 0.22 +1.1
1,685,344 + ABIE53_005411 0.22 -0.7
1,685,345 - ABIE53_005411 0.22 +0.3
1,685,360 + ABIE53_005411 0.24 +0.5
1,685,360 + ABIE53_005411 0.24 +0.4
1,685,422 + ABIE53_005411 0.29 +0.1
1,685,422 + ABIE53_005411 0.29 -0.2
1,685,422 + ABIE53_005411 0.29 +1.1
1,685,422 + ABIE53_005411 0.29 -1.7
1,685,423 - ABIE53_005411 0.29 -1.5
1,685,423 - ABIE53_005411 0.29 +2.1
1,685,423 - ABIE53_005411 0.29 +1.1
1,685,423 - ABIE53_005411 0.29 +1.0
1,685,461 + ABIE53_005411 0.32 +0.3
1,685,462 - ABIE53_005411 0.32 +1.0
1,685,462 - ABIE53_005411 0.32 +0.4
1,685,462 - ABIE53_005411 0.32 -0.8
1,685,561 - ABIE53_005411 0.41 +0.5
1,685,562 + ABIE53_005411 0.41 +2.1
1,685,562 + ABIE53_005411 0.41 +0.4
1,685,562 + ABIE53_005411 0.41 +1.9
1,685,562 + ABIE53_005411 0.41 -0.7
1,685,563 - ABIE53_005411 0.41 +0.9
1,685,570 + ABIE53_005411 0.41 -0.1
1,685,596 + ABIE53_005411 0.44 -0.1
1,685,597 - ABIE53_005411 0.44 -1.5
1,685,622 + ABIE53_005411 0.46 -0.3
1,685,623 - ABIE53_005411 0.46 -1.5
1,685,727 + ABIE53_005411 0.55 -0.9
1,685,727 + ABIE53_005411 0.55 -0.6
1,685,727 + ABIE53_005411 0.55 -0.1
1,685,728 - ABIE53_005411 0.55 -0.7
1,685,728 - ABIE53_005411 0.55 -1.9
1,685,826 + ABIE53_005411 0.63 -0.2
1,685,827 - ABIE53_005411 0.63 -2.3
1,685,827 - ABIE53_005411 0.63 -1.6
1,685,858 + ABIE53_005411 0.66 -1.7
1,685,858 + ABIE53_005411 0.66 -0.6
1,685,858 + ABIE53_005411 0.66 +0.3
1,685,995 + ABIE53_005411 0.77 +0.8
1,686,044 - ABIE53_005411 0.81 +0.3
1,686,101 + ABIE53_005411 0.86 -0.8
1,686,153 - +0.3
1,686,157 - +1.4
1,686,157 - +0.8
1,686,165 - -1.8
1,686,374 - ABIE53_005412 0.64 -1.3
1,686,382 - ABIE53_005412 0.69 -0.8
1,686,390 + ABIE53_005412 0.74 -1.5
1,686,393 + ABIE53_005412 0.75 -0.7
1,686,634 - ABIE53_005413 0.16 -0.6
1,686,854 + ABIE53_005413 0.32 +0.2
1,686,855 - ABIE53_005413 0.32 -1.4
1,686,855 - ABIE53_005413 0.32 +1.1
1,686,855 - ABIE53_005413 0.32 +0.5
1,686,936 + ABIE53_005413 0.38 +1.1
1,686,936 + ABIE53_005413 0.38 -0.0
1,686,937 - ABIE53_005413 0.38 +0.2
1,686,981 + ABIE53_005413 0.41 +0.2
1,687,026 + ABIE53_005413 0.44 -0.5
1,687,047 - ABIE53_005413 0.46 +0.7
1,687,183 - ABIE53_005413 0.55 -0.5
1,687,183 - ABIE53_005413 0.55 -0.2
1,687,183 - ABIE53_005413 0.55 -1.0
1,687,213 + ABIE53_005413 0.58 -1.4
1,687,214 - ABIE53_005413 0.58 +0.5
1,687,214 - ABIE53_005413 0.58 +0.6
1,687,214 - ABIE53_005413 0.58 +0.7
1,687,214 - ABIE53_005413 0.58 -0.7
1,687,214 - ABIE53_005413 0.58 +0.0
1,687,214 - ABIE53_005413 0.58 -1.4
1,687,235 - ABIE53_005413 0.59 -0.2
1,687,339 + ABIE53_005413 0.67 +1.0
1,687,339 + ABIE53_005413 0.67 -1.5
1,687,339 + ABIE53_005413 0.67 -0.9
1,687,340 - ABIE53_005413 0.67 +0.2
1,687,340 - ABIE53_005413 0.67 +0.3
1,687,340 - ABIE53_005413 0.67 +2.5
1,687,340 - ABIE53_005413 0.67 -0.9
1,687,340 - ABIE53_005413 0.67 -0.6
1,687,340 - ABIE53_005413 0.67 +0.3
1,687,340 - ABIE53_005413 0.67 +1.1
1,687,340 - ABIE53_005413 0.67 -0.0
1,687,340 - ABIE53_005413 0.67 -0.9
1,687,340 - ABIE53_005413 0.67 +0.1
1,687,341 + ABIE53_005413 0.67 -1.7
1,687,341 + ABIE53_005413 0.67 -0.7
1,687,341 + ABIE53_005413 0.67 -0.0
1,687,341 + ABIE53_005413 0.67 -0.8
1,687,341 + ABIE53_005413 0.67 +1.1
1,687,341 + ABIE53_005413 0.67 -0.2
1,687,341 + ABIE53_005413 0.67 +0.6
1,687,342 - ABIE53_005413 0.67 +0.5
1,687,342 - ABIE53_005413 0.67 -1.3
1,687,342 - ABIE53_005413 0.67 -1.7
1,687,342 - ABIE53_005413 0.67 +0.5
1,687,342 - ABIE53_005413 0.67 -0.9
1,687,342 - ABIE53_005413 0.67 +0.8
1,687,342 - ABIE53_005413 0.67 -1.3
1,687,342 - ABIE53_005413 0.67 -0.3
1,687,342 - ABIE53_005413 0.67 -0.9
1,687,342 - ABIE53_005413 0.67 -1.0
1,687,342 - ABIE53_005413 0.67 +0.3
1,687,342 - ABIE53_005413 0.67 +0.8
1,687,342 - ABIE53_005413 0.67 +1.1
1,687,347 + ABIE53_005413 0.67 -0.9
1,687,412 + ABIE53_005413 0.72 +2.4

Or see this region's nucleotide sequence