Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004539 and ABIE53_004540 are separated by 21 nucleotides ABIE53_004540 and ABIE53_004541 overlap by 4 nucleotides ABIE53_004541 and ABIE53_004542 are separated by 48 nucleotides
ABIE53_004539: ABIE53_004539 - alkylation response protein AidB-like acyl-CoA dehydrogenase, at 728,251 to 729,465
_004539
ABIE53_004540: ABIE53_004540 - flavin reductase (NADH), at 729,487 to 729,990
_004540
ABIE53_004541: ABIE53_004541 - hypothetical protein, at 729,987 to 730,682
_004541
ABIE53_004542: ABIE53_004542 - DNA-binding transcriptional LysR family regulator, at 730,731 to 731,651
_004542
Position (kb) 729
730
731 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 728.992 kb on + strand, within ABIE53_004539 at 728.993 kb on - strand, within ABIE53_004539 at 728.993 kb on - strand, within ABIE53_004539 at 729.115 kb on + strand, within ABIE53_004539 at 729.115 kb on + strand, within ABIE53_004539 at 729.118 kb on + strand, within ABIE53_004539 at 729.276 kb on + strand, within ABIE53_004539 at 729.276 kb on + strand, within ABIE53_004539 at 729.276 kb on + strand, within ABIE53_004539 at 729.276 kb on + strand, within ABIE53_004539 at 729.277 kb on - strand, within ABIE53_004539 at 729.277 kb on - strand, within ABIE53_004539 at 729.305 kb on - strand, within ABIE53_004539 at 729.305 kb on - strand, within ABIE53_004539 at 729.305 kb on - strand, within ABIE53_004539 at 729.305 kb on - strand, within ABIE53_004539 at 729.331 kb on + strand, within ABIE53_004539 at 729.409 kb on + strand at 729.409 kb on + strand at 729.410 kb on - strand at 729.458 kb on - strand at 729.661 kb on + strand, within ABIE53_004540 at 729.661 kb on + strand, within ABIE53_004540 at 729.661 kb on + strand, within ABIE53_004540 at 729.661 kb on + strand, within ABIE53_004540 at 729.661 kb on + strand, within ABIE53_004540 at 729.661 kb on + strand, within ABIE53_004540 at 729.662 kb on - strand, within ABIE53_004540 at 729.696 kb on - strand, within ABIE53_004540 at 729.875 kb on + strand, within ABIE53_004540 at 729.875 kb on + strand, within ABIE53_004540 at 729.912 kb on + strand, within ABIE53_004540 at 729.912 kb on + strand, within ABIE53_004540 at 729.913 kb on - strand, within ABIE53_004540 at 729.913 kb on - strand, within ABIE53_004540 at 729.913 kb on - strand, within ABIE53_004540 at 730.168 kb on + strand, within ABIE53_004541 at 730.169 kb on - strand, within ABIE53_004541 at 730.179 kb on + strand, within ABIE53_004541 at 730.179 kb on + strand, within ABIE53_004541 at 730.314 kb on - strand, within ABIE53_004541 at 730.314 kb on - strand, within ABIE53_004541 at 730.314 kb on - strand, within ABIE53_004541 at 730.350 kb on + strand, within ABIE53_004541 at 730.351 kb on - strand, within ABIE53_004541 at 730.351 kb on - strand, within ABIE53_004541 at 730.351 kb on - strand, within ABIE53_004541 at 730.351 kb on - strand, within ABIE53_004541 at 730.351 kb on - strand, within ABIE53_004541 at 730.534 kb on + strand, within ABIE53_004541 at 730.659 kb on + strand at 730.659 kb on + strand at 730.660 kb on - strand at 730.660 kb on - strand at 730.660 kb on - strand at 730.660 kb on - strand at 731.196 kb on + strand, within ABIE53_004542 at 731.197 kb on - strand, within ABIE53_004542 at 731.197 kb on - strand, within ABIE53_004542 at 731.197 kb on - strand, within ABIE53_004542 at 731.325 kb on + strand, within ABIE53_004542 at 731.331 kb on + strand, within ABIE53_004542 at 731.331 kb on + strand, within ABIE53_004542 at 731.332 kb on - strand, within ABIE53_004542 at 731.574 kb on - strand at 731.574 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 728,992 + ABIE53_004539 0.61 +1.2 728,993 - ABIE53_004539 0.61 -1.3 728,993 - ABIE53_004539 0.61 -0.3 729,115 + ABIE53_004539 0.71 +3.2 729,115 + ABIE53_004539 0.71 +0.3 729,118 + ABIE53_004539 0.71 -0.1 729,276 + ABIE53_004539 0.84 -1.2 729,276 + ABIE53_004539 0.84 +0.0 729,276 + ABIE53_004539 0.84 +0.9 729,276 + ABIE53_004539 0.84 -1.0 729,277 - ABIE53_004539 0.84 -0.0 729,277 - ABIE53_004539 0.84 -0.9 729,305 - ABIE53_004539 0.87 -1.7 729,305 - ABIE53_004539 0.87 +0.0 729,305 - ABIE53_004539 0.87 -0.4 729,305 - ABIE53_004539 0.87 +1.1 729,331 + ABIE53_004539 0.89 +0.0 729,409 + +0.6 729,409 + -0.8 729,410 - -1.1 729,458 - +1.2 729,661 + ABIE53_004540 0.35 +0.6 729,661 + ABIE53_004540 0.35 +0.1 729,661 + ABIE53_004540 0.35 +0.0 729,661 + ABIE53_004540 0.35 +0.6 729,661 + ABIE53_004540 0.35 -0.9 729,661 + ABIE53_004540 0.35 +0.2 729,662 - ABIE53_004540 0.35 -0.4 729,696 - ABIE53_004540 0.41 -1.4 729,875 + ABIE53_004540 0.77 +0.6 729,875 + ABIE53_004540 0.77 -0.3 729,912 + ABIE53_004540 0.84 +2.2 729,912 + ABIE53_004540 0.84 -1.7 729,913 - ABIE53_004540 0.85 -1.1 729,913 - ABIE53_004540 0.85 +1.6 729,913 - ABIE53_004540 0.85 +0.6 730,168 + ABIE53_004541 0.26 +1.0 730,169 - ABIE53_004541 0.26 +0.1 730,179 + ABIE53_004541 0.28 +0.7 730,179 + ABIE53_004541 0.28 +1.0 730,314 - ABIE53_004541 0.47 +0.4 730,314 - ABIE53_004541 0.47 +1.2 730,314 - ABIE53_004541 0.47 -0.6 730,350 + ABIE53_004541 0.52 -0.4 730,351 - ABIE53_004541 0.52 -1.1 730,351 - ABIE53_004541 0.52 -1.4 730,351 - ABIE53_004541 0.52 -0.1 730,351 - ABIE53_004541 0.52 -1.8 730,351 - ABIE53_004541 0.52 +1.4 730,534 + ABIE53_004541 0.79 +0.2 730,659 + -0.3 730,659 + -0.3 730,660 - -0.8 730,660 - +1.2 730,660 - +2.2 730,660 - -0.1 731,196 + ABIE53_004542 0.50 -0.4 731,197 - ABIE53_004542 0.51 -0.5 731,197 - ABIE53_004542 0.51 +0.1 731,197 - ABIE53_004542 0.51 +4.0 731,325 + ABIE53_004542 0.64 +1.9 731,331 + ABIE53_004542 0.65 -0.4 731,331 + ABIE53_004542 0.65 +1.9 731,332 - ABIE53_004542 0.65 -1.0 731,574 - +1.9 731,574 - +0.3
Or see this region's nucleotide sequence