Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003377

Experiment: D-Glucose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C)
3,798,836	+		ABIE53_003376	0.13	-1.2
3,798,836	+		ABIE53_003376	0.13	-0.7
3,798,836	+		ABIE53_003376	0.13	-0.2
3,798,836	+		ABIE53_003376	0.13	+0.7
3,798,836	+		ABIE53_003376	0.13	-2.5
3,798,836	+		ABIE53_003376	0.13	+1.6
3,798,837	-		ABIE53_003376	0.13	-1.3
3,798,837	-		ABIE53_003376	0.13	-0.2
3,798,837	-		ABIE53_003376	0.13	+0.5
3,798,837	-		ABIE53_003376	0.13	-0.4
3,798,837	-		ABIE53_003376	0.13	+0.6
3,798,837	-		ABIE53_003376	0.13	-0.4
3,798,837	-		ABIE53_003376	0.13	-0.5
3,798,863	+		ABIE53_003376	0.18	+0.8
3,798,864	-		ABIE53_003376	0.18	-0.2
3,798,864	-		ABIE53_003376	0.18	-0.5
3,798,864	-		ABIE53_003376	0.18	-1.0
3,798,875	+		ABIE53_003376	0.20	-2.0
3,798,875	+		ABIE53_003376	0.20	-0.4
3,798,875	+		ABIE53_003376	0.20	+0.2
3,798,875	+		ABIE53_003376	0.20	+0.7
3,798,875	+		ABIE53_003376	0.20	-0.7
3,798,875	+		ABIE53_003376	0.20	-0.5
3,798,876	-		ABIE53_003376	0.21	+0.3
3,798,876	-		ABIE53_003376	0.21	-0.7
3,798,876	-		ABIE53_003376	0.21	-0.6
3,798,893	+		ABIE53_003376	0.24	+0.6
3,798,893	+		ABIE53_003376	0.24	-2.3
3,798,893	+		ABIE53_003376	0.24	+3.7
3,798,893	+		ABIE53_003376	0.24	+0.5
3,798,894	-		ABIE53_003376	0.24	-0.8
3,798,894	-		ABIE53_003376	0.24	-1.7
3,798,894	-		ABIE53_003376	0.24	-1.0
3,798,894	-		ABIE53_003376	0.24	+1.1
3,798,894	-		ABIE53_003376	0.24	-0.8
3,799,023	-		ABIE53_003376	0.47	-1.3
3,799,023	-		ABIE53_003376	0.47	+1.6
3,799,041	+		ABIE53_003376	0.51	+1.1
3,799,042	-		ABIE53_003376	0.51	-0.3
3,799,042	-		ABIE53_003376	0.51	-0.8
3,799,042	-		ABIE53_003376	0.51	+0.1
3,799,042	-		ABIE53_003376	0.51	+0.1
3,799,042	-		ABIE53_003376	0.51	+3.1
3,799,103	+		ABIE53_003376	0.62	+0.7
3,799,103	+		ABIE53_003376	0.62	-2.5
3,799,103	+		ABIE53_003376	0.62	-0.2
3,799,104	-		ABIE53_003376	0.62	-0.7
3,799,104	-		ABIE53_003376	0.62	+2.1
3,799,178	+		ABIE53_003376	0.76	-0.1
3,799,178	+		ABIE53_003376	0.76	+0.8
3,799,178	+		ABIE53_003376	0.76	+0.1
3,799,178	+		ABIE53_003376	0.76	+0.3
3,799,178	+		ABIE53_003376	0.76	-0.9
3,799,179	-		ABIE53_003376	0.76	+0.4
3,799,179	-		ABIE53_003376	0.76	-0.4
3,799,179	-		ABIE53_003376	0.76	+0.5
3,799,179	-		ABIE53_003376	0.76	-0.9
3,799,247	+		ABIE53_003376	0.88	-1.6
3,799,248	-		ABIE53_003376	0.88	+0.0
3,799,248	-		ABIE53_003376	0.88	-1.5
3,799,248	-		ABIE53_003376	0.88	-0.3
3,799,385	+				-0.2
3,799,385	+				+0.5
3,799,399	-				+1.1
3,799,454	-				+0.3
3,799,454	-				-1.0
3,799,482	+				-0.9
3,799,482	+				+0.4
3,799,483	-				-0.9
3,799,483	-				+0.1
3,799,791	+		ABIE53_003377	0.44	+0.1
3,799,791	+		ABIE53_003377	0.44	-1.9
3,799,791	+		ABIE53_003377	0.44	-0.7
3,799,791	+		ABIE53_003377	0.44	+1.6
3,799,791	+		ABIE53_003377	0.44	+1.1
3,799,791	+		ABIE53_003377	0.44	-0.6
3,799,792	-		ABIE53_003377	0.44	+1.1
3,799,792	-		ABIE53_003377	0.44	-1.1
3,799,792	-		ABIE53_003377	0.44	-1.3
3,799,792	-		ABIE53_003377	0.44	+2.1
3,799,792	-		ABIE53_003377	0.44	+0.1
3,799,792	-		ABIE53_003377	0.44	-0.3
3,799,792	-		ABIE53_003377	0.44	+0.2
3,799,792	-		ABIE53_003377	0.44	+2.1
3,799,828	+		ABIE53_003377	0.51	+1.0
3,799,828	+		ABIE53_003377	0.51	+0.6
3,799,828	+		ABIE53_003377	0.51	-0.7
3,799,828	+		ABIE53_003377	0.51	+0.8
3,799,828	+		ABIE53_003377	0.51	-1.6
3,799,828	+		ABIE53_003377	0.51	+0.5
3,799,828	+		ABIE53_003377	0.51	+1.6
3,799,828	+		ABIE53_003377	0.51	+1.3
3,799,828	+		ABIE53_003377	0.51	+0.9
3,799,828	+		ABIE53_003377	0.51	-0.4
3,799,828	+		ABIE53_003377	0.51	-0.3
3,799,828	+		ABIE53_003377	0.51	+1.1
3,799,828	+		ABIE53_003377	0.51	-2.2
3,799,828	+		ABIE53_003377	0.51	-0.1
3,799,828	+		ABIE53_003377	0.51	-0.3
3,799,829	-		ABIE53_003377	0.51	+1.1
3,799,829	-		ABIE53_003377	0.51	-0.8
3,799,829	-		ABIE53_003377	0.51	+0.3
3,799,829	-		ABIE53_003377	0.51	-0.4
3,799,829	-		ABIE53_003377	0.51	+2.4
3,799,829	-		ABIE53_003377	0.51	-0.3
3,799,829	-		ABIE53_003377	0.51	-0.2
3,799,873	+		ABIE53_003377	0.60	-1.0
3,799,874	-		ABIE53_003377	0.60	+0.3
3,799,874	-		ABIE53_003377	0.60	-0.2
3,799,898	+		ABIE53_003377	0.65	+1.1
3,799,940	+		ABIE53_003377	0.73	-0.1
3,799,953	+		ABIE53_003377	0.75	-0.7
3,800,076	+				-0.4
3,800,076	+				-0.5
3,800,077	-				-1.1
3,800,077	-				-2.3
3,800,077	-				-0.5
3,800,077	-				+0.3
3,800,077	-				-1.3
3,800,077	-				-0.8
3,800,077	-				-1.1
3,800,077	-				-1.3
3,800,234	+		ABIE53_003378	0.18	-1.0
3,800,234	+		ABIE53_003378	0.18	-1.0
3,800,235	-		ABIE53_003378	0.18	-1.4
3,800,235	-		ABIE53_003378	0.18	-0.2
3,800,246	+		ABIE53_003378	0.20	-0.2
3,800,247	-		ABIE53_003378	0.20	+1.8
3,800,267	+		ABIE53_003378	0.24	-1.7
3,800,267	+		ABIE53_003378	0.24	+0.6
3,800,267	+		ABIE53_003378	0.24	-1.4
3,800,267	+		ABIE53_003378	0.24	+0.8
3,800,267	+		ABIE53_003378	0.24	-1.4
3,800,268	-		ABIE53_003378	0.24	-0.3
3,800,268	-		ABIE53_003378	0.24	-1.2
3,800,269	+		ABIE53_003378	0.25	-1.3
3,800,269	+		ABIE53_003378	0.25	+0.6
3,800,269	+		ABIE53_003378	0.25	-2.0
3,800,269	+		ABIE53_003378	0.25	+0.4
3,800,269	+		ABIE53_003378	0.25	-0.8
3,800,269	+		ABIE53_003378	0.25	-1.9
3,800,269	+		ABIE53_003378	0.25	-0.6
3,800,269	+		ABIE53_003378	0.25	-0.4
3,800,269	+		ABIE53_003378	0.25	+0.6
3,800,269	+		ABIE53_003378	0.25	-0.4
3,800,270	-		ABIE53_003378	0.25	-0.3
3,800,270	-		ABIE53_003378	0.25	+0.6
3,800,270	-		ABIE53_003378	0.25	-2.0
3,800,270	-		ABIE53_003378	0.25	-1.7
3,800,296	+		ABIE53_003378	0.30	-0.8
3,800,296	+		ABIE53_003378	0.30	-0.1
3,800,296	+		ABIE53_003378	0.30	+0.6
3,800,296	+		ABIE53_003378	0.30	+0.6
3,800,296	+		ABIE53_003378	0.30	-0.2
3,800,332	+		ABIE53_003378	0.37	+0.1
3,800,332	+		ABIE53_003378	0.37	+0.5
3,800,332	+		ABIE53_003378	0.37	-0.9
3,800,332	+		ABIE53_003378	0.37	-1.6
3,800,332	+		ABIE53_003378	0.37	-0.8
3,800,332	+		ABIE53_003378	0.37	+0.6
3,800,333	-		ABIE53_003378	0.37	-0.2
3,800,333	-		ABIE53_003378	0.37	+1.1
3,800,333	-		ABIE53_003378	0.37	-0.3
3,800,333	-		ABIE53_003378	0.37	+4.7
3,800,333	-		ABIE53_003378	0.37	-0.8
3,800,495	-		ABIE53_003378	0.68	-1.0
3,800,495	-		ABIE53_003378	0.68	-1.0
3,800,495	-		ABIE53_003378	0.68	+1.1
3,800,495	-		ABIE53_003378	0.68	+0.0
3,800,523	+		ABIE53_003378	0.74	-0.7
3,800,523	+		ABIE53_003378	0.74	+0.5
3,800,621	+				-1.0
3,800,657	+				+1.6
3,800,658	-				-0.2
3,800,679	+				+0.1
3,800,679	+				-1.6
3,800,679	+				-0.7
3,800,689	+				-0.1
3,800,690	-				+0.8
3,800,709	-				-0.7
3,800,751	+				-1.8
3,800,751	+				-0.6
3,800,751	+				+0.1
3,800,751	+				+0.1
3,800,751	+				-0.5
3,800,751	+				+2.1
3,800,751	+				-1.2
3,800,751	+				+0.3
3,800,752	-				+0.9
3,800,752	-				-0.7
3,800,752	-				+1.0
3,800,752	-				+0.6
3,800,752	-				+0.6
3,800,761	+				-0.7
3,800,763	+				-0.2
3,800,763	+				-1.0
3,800,763	+				-0.0
3,800,764	-				-0.4
3,800,764	-				+3.2
3,800,764	-				-0.2
3,800,764	-				-0.9
3,800,764	-				+0.5
3,800,931	-		ABIE53_003379	0.23	+0.5
3,800,962	-		ABIE53_003379	0.27	+0.4
3,800,962	-		ABIE53_003379	0.27	+2.1
3,800,962	-		ABIE53_003379	0.27	+2.1
3,800,962	-		ABIE53_003379	0.27	+1.1
3,801,006	+		ABIE53_003379	0.34	+1.3
3,801,007	-		ABIE53_003379	0.34	+0.8