Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS17740 and RALBFv3_RS17745 are separated by 28 nucleotides RALBFv3_RS17745 and RALBFv3_RS17750 are separated by 10 nucleotides
RALBFv3_RS17740: RALBFv3_RS17740 - AMP-dependent synthetase, at 482,391 to 484,079
_RS17740
RALBFv3_RS17745: RALBFv3_RS17745 - sulfite exporter TauE/SafE family protein, at 484,108 to 484,959
_RS17745
RALBFv3_RS17750: RALBFv3_RS17750 - L-aspartate oxidase, at 484,970 to 486,580
_RS17750
Position (kb) 484
485 Strain fitness (log2 ratio) -2
-1
0
1 at 483.193 kb on - strand, within RALBFv3_RS17740 at 483.193 kb on - strand, within RALBFv3_RS17740 at 483.597 kb on + strand, within RALBFv3_RS17740 at 483.600 kb on - strand, within RALBFv3_RS17740 at 483.645 kb on + strand, within RALBFv3_RS17740 at 483.645 kb on + strand, within RALBFv3_RS17740 at 483.646 kb on - strand, within RALBFv3_RS17740 at 483.646 kb on - strand, within RALBFv3_RS17740 at 483.684 kb on + strand, within RALBFv3_RS17740 at 483.693 kb on + strand, within RALBFv3_RS17740 at 483.693 kb on + strand, within RALBFv3_RS17740 at 483.693 kb on + strand, within RALBFv3_RS17740 at 483.693 kb on + strand, within RALBFv3_RS17740 at 483.693 kb on + strand, within RALBFv3_RS17740 at 483.694 kb on - strand, within RALBFv3_RS17740 at 483.694 kb on - strand, within RALBFv3_RS17740 at 483.694 kb on - strand, within RALBFv3_RS17740 at 483.694 kb on - strand, within RALBFv3_RS17740 at 483.927 kb on + strand at 483.927 kb on + strand at 483.927 kb on + strand at 483.927 kb on + strand at 483.928 kb on - strand at 483.928 kb on - strand at 484.050 kb on + strand at 484.051 kb on - strand at 484.110 kb on - strand at 484.174 kb on + strand at 484.175 kb on - strand at 484.271 kb on + strand, within RALBFv3_RS17745 at 484.272 kb on - strand, within RALBFv3_RS17745 at 484.403 kb on + strand, within RALBFv3_RS17745 at 484.404 kb on - strand, within RALBFv3_RS17745 at 484.445 kb on + strand, within RALBFv3_RS17745 at 484.445 kb on + strand, within RALBFv3_RS17745 at 484.445 kb on + strand, within RALBFv3_RS17745 at 484.547 kb on + strand, within RALBFv3_RS17745 at 484.788 kb on - strand, within RALBFv3_RS17745 at 484.788 kb on - strand, within RALBFv3_RS17745 at 485.488 kb on - strand, within RALBFv3_RS17750 at 485.488 kb on - strand, within RALBFv3_RS17750 at 485.488 kb on - strand, within RALBFv3_RS17750 at 485.488 kb on - strand, within RALBFv3_RS17750 at 485.488 kb on - strand, within RALBFv3_RS17750 at 485.517 kb on - strand, within RALBFv3_RS17750 at 485.517 kb on - strand, within RALBFv3_RS17750 at 485.517 kb on - strand, within RALBFv3_RS17750 at 485.544 kb on + strand, within RALBFv3_RS17750 at 485.544 kb on + strand, within RALBFv3_RS17750 at 485.545 kb on - strand, within RALBFv3_RS17750 at 485.659 kb on + strand, within RALBFv3_RS17750 at 485.659 kb on + strand, within RALBFv3_RS17750 at 485.659 kb on + strand, within RALBFv3_RS17750 at 485.660 kb on - strand, within RALBFv3_RS17750 at 485.757 kb on + strand, within RALBFv3_RS17750 at 485.757 kb on + strand, within RALBFv3_RS17750 at 485.791 kb on - strand, within RALBFv3_RS17750
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 483,193 - RALBFv3_RS17740 0.47 -0.1 483,193 - RALBFv3_RS17740 0.47 -0.3 483,597 + RALBFv3_RS17740 0.71 -0.1 483,600 - RALBFv3_RS17740 0.72 +0.3 483,645 + RALBFv3_RS17740 0.74 -0.6 483,645 + RALBFv3_RS17740 0.74 +0.5 483,646 - RALBFv3_RS17740 0.74 -2.2 483,646 - RALBFv3_RS17740 0.74 +0.4 483,684 + RALBFv3_RS17740 0.77 -0.3 483,693 + RALBFv3_RS17740 0.77 +0.0 483,693 + RALBFv3_RS17740 0.77 +0.1 483,693 + RALBFv3_RS17740 0.77 -0.9 483,693 + RALBFv3_RS17740 0.77 -1.3 483,693 + RALBFv3_RS17740 0.77 +0.4 483,694 - RALBFv3_RS17740 0.77 +0.3 483,694 - RALBFv3_RS17740 0.77 +0.1 483,694 - RALBFv3_RS17740 0.77 +0.9 483,694 - RALBFv3_RS17740 0.77 +0.6 483,927 + -0.1 483,927 + +0.8 483,927 + +0.6 483,927 + +1.5 483,928 - +0.1 483,928 - -0.6 484,050 + +0.0 484,051 - -0.3 484,110 - -1.0 484,174 + +0.2 484,175 - -0.5 484,271 + RALBFv3_RS17745 0.19 -0.5 484,272 - RALBFv3_RS17745 0.19 -0.5 484,403 + RALBFv3_RS17745 0.35 +0.9 484,404 - RALBFv3_RS17745 0.35 +0.0 484,445 + RALBFv3_RS17745 0.40 +0.5 484,445 + RALBFv3_RS17745 0.40 -0.0 484,445 + RALBFv3_RS17745 0.40 +0.7 484,547 + RALBFv3_RS17745 0.52 +0.0 484,788 - RALBFv3_RS17745 0.80 +0.1 484,788 - RALBFv3_RS17745 0.80 -0.3 485,488 - RALBFv3_RS17750 0.32 -0.2 485,488 - RALBFv3_RS17750 0.32 -1.3 485,488 - RALBFv3_RS17750 0.32 +0.2 485,488 - RALBFv3_RS17750 0.32 -0.1 485,488 - RALBFv3_RS17750 0.32 -1.2 485,517 - RALBFv3_RS17750 0.34 -0.2 485,517 - RALBFv3_RS17750 0.34 -0.7 485,517 - RALBFv3_RS17750 0.34 -0.0 485,544 + RALBFv3_RS17750 0.36 +0.3 485,544 + RALBFv3_RS17750 0.36 -1.3 485,545 - RALBFv3_RS17750 0.36 +0.7 485,659 + RALBFv3_RS17750 0.43 -0.8 485,659 + RALBFv3_RS17750 0.43 -2.3 485,659 + RALBFv3_RS17750 0.43 -0.6 485,660 - RALBFv3_RS17750 0.43 +0.3 485,757 + RALBFv3_RS17750 0.49 -0.9 485,757 + RALBFv3_RS17750 0.49 -0.2 485,791 - RALBFv3_RS17750 0.51 -0.9
Or see this region's nucleotide sequence