Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS04480

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS04470 and RALBFv3_RS04475 overlap by 16 nucleotidesRALBFv3_RS04475 and RALBFv3_RS04480 overlap by 4 nucleotidesRALBFv3_RS04480 and RALBFv3_RS23680 are separated by 11 nucleotidesRALBFv3_RS23680 and RALBFv3_RS04485 overlap by 23 nucleotides RALBFv3_RS04470: RALBFv3_RS04470 - alpha-ribazole phosphatase, at 1,004,945 to 1,005,523 _RS04470 RALBFv3_RS04475: RALBFv3_RS04475 - adenosylcobinamide-GDP ribazoletransferase, at 1,005,508 to 1,006,284 _RS04475 RALBFv3_RS04480: RALBFv3_RS04480 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 1,006,281 to 1,007,348 _RS04480 RALBFv3_RS23680: RALBFv3_RS23680 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 1,007,360 to 1,007,566 _RS23680 RALBFv3_RS04485: RALBFv3_RS04485 - ABC transporter ATP-binding protein, at 1,007,544 to 1,008,380 _RS04485 Position (kb) 1006 1007 1008Strain fitness (log2 ratio) -1 0 1 2at 1005.468 kb on + strandat 1005.469 kb on - strandat 1005.615 kb on - strand, within RALBFv3_RS04475at 1005.797 kb on + strand, within RALBFv3_RS04475at 1005.797 kb on + strand, within RALBFv3_RS04475at 1005.797 kb on + strand, within RALBFv3_RS04475at 1005.797 kb on + strand, within RALBFv3_RS04475at 1005.798 kb on + strand, within RALBFv3_RS04475at 1005.798 kb on - strand, within RALBFv3_RS04475at 1005.798 kb on - strand, within RALBFv3_RS04475at 1005.983 kb on + strand, within RALBFv3_RS04475at 1005.984 kb on - strand, within RALBFv3_RS04475at 1006.053 kb on + strand, within RALBFv3_RS04475at 1006.054 kb on - strand, within RALBFv3_RS04475at 1006.821 kb on - strand, within RALBFv3_RS04480at 1007.251 kb on - strandat 1007.251 kb on - strandat 1007.422 kb on + strand, within RALBFv3_RS23680at 1007.494 kb on + strand, within RALBFv3_RS23680at 1007.495 kb on - strand, within RALBFv3_RS23680at 1007.841 kb on + strand, within RALBFv3_RS04485at 1008.300 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
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1,005,468 + -0.1
1,005,469 - +0.9
1,005,615 - RALBFv3_RS04475 0.14 +0.5
1,005,797 + RALBFv3_RS04475 0.37 -0.5
1,005,797 + RALBFv3_RS04475 0.37 -0.2
1,005,797 + RALBFv3_RS04475 0.37 +0.1
1,005,797 + RALBFv3_RS04475 0.37 +1.3
1,005,798 + RALBFv3_RS04475 0.37 -0.5
1,005,798 - RALBFv3_RS04475 0.37 -0.4
1,005,798 - RALBFv3_RS04475 0.37 -0.2
1,005,983 + RALBFv3_RS04475 0.61 +0.4
1,005,984 - RALBFv3_RS04475 0.61 -1.2
1,006,053 + RALBFv3_RS04475 0.70 +0.7
1,006,054 - RALBFv3_RS04475 0.70 -0.4
1,006,821 - RALBFv3_RS04480 0.51 +0.7
1,007,251 - +2.1
1,007,251 - -0.8
1,007,422 + RALBFv3_RS23680 0.30 +0.7
1,007,494 + RALBFv3_RS23680 0.65 +0.9
1,007,495 - RALBFv3_RS23680 0.65 -0.2
1,007,841 + RALBFv3_RS04485 0.35 -0.4
1,008,300 - -0.3

Or see this region's nucleotide sequence