Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS03380 and RALBFv3_RS03390 are separated by 12 nucleotides RALBFv3_RS03390 and RALBFv3_RS03395 are separated by 296 nucleotides
RALBFv3_RS03380: RALBFv3_RS03380 - IS3 family transposase, at 736,251 to 737,485
_RS03380
RALBFv3_RS03390: RALBFv3_RS03390 - hemagglutinin-related protein, at 737,498 to 739,828
_RS03390
RALBFv3_RS03395: RALBFv3_RS03395 - filamentous hemagglutinin, at 740,125 to 750,345
_RS03395
Position (kb) 737
738
739
740 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 737.566 kb on + strand at 737.579 kb on - strand at 737.683 kb on + strand at 737.747 kb on + strand, within RALBFv3_RS03390 at 737.984 kb on - strand, within RALBFv3_RS03390 at 737.984 kb on - strand, within RALBFv3_RS03390 at 738.044 kb on + strand, within RALBFv3_RS03390 at 738.045 kb on - strand, within RALBFv3_RS03390 at 738.060 kb on - strand, within RALBFv3_RS03390 at 738.060 kb on - strand, within RALBFv3_RS03390 at 738.143 kb on + strand, within RALBFv3_RS03390 at 738.143 kb on + strand, within RALBFv3_RS03390 at 738.144 kb on - strand, within RALBFv3_RS03390 at 738.144 kb on - strand, within RALBFv3_RS03390 at 738.144 kb on - strand, within RALBFv3_RS03390 at 738.148 kb on + strand, within RALBFv3_RS03390 at 738.149 kb on - strand, within RALBFv3_RS03390 at 738.149 kb on - strand, within RALBFv3_RS03390 at 738.149 kb on - strand, within RALBFv3_RS03390 at 738.226 kb on + strand, within RALBFv3_RS03390 at 738.260 kb on - strand, within RALBFv3_RS03390 at 738.277 kb on + strand, within RALBFv3_RS03390 at 738.278 kb on - strand, within RALBFv3_RS03390 at 738.301 kb on - strand, within RALBFv3_RS03390 at 738.367 kb on + strand, within RALBFv3_RS03390 at 738.391 kb on + strand, within RALBFv3_RS03390 at 738.391 kb on + strand, within RALBFv3_RS03390 at 738.391 kb on + strand, within RALBFv3_RS03390 at 738.391 kb on + strand, within RALBFv3_RS03390 at 738.451 kb on - strand, within RALBFv3_RS03390 at 738.488 kb on + strand, within RALBFv3_RS03390 at 738.488 kb on + strand, within RALBFv3_RS03390 at 738.488 kb on + strand, within RALBFv3_RS03390 at 738.488 kb on + strand, within RALBFv3_RS03390 at 738.488 kb on + strand, within RALBFv3_RS03390 at 738.488 kb on + strand, within RALBFv3_RS03390 at 738.489 kb on - strand, within RALBFv3_RS03390 at 738.489 kb on - strand, within RALBFv3_RS03390 at 738.492 kb on + strand, within RALBFv3_RS03390 at 738.492 kb on + strand, within RALBFv3_RS03390 at 738.492 kb on + strand, within RALBFv3_RS03390 at 738.492 kb on + strand, within RALBFv3_RS03390 at 738.492 kb on + strand, within RALBFv3_RS03390 at 738.492 kb on + strand, within RALBFv3_RS03390 at 738.492 kb on + strand, within RALBFv3_RS03390 at 738.492 kb on + strand, within RALBFv3_RS03390 at 738.493 kb on - strand, within RALBFv3_RS03390 at 738.493 kb on - strand, within RALBFv3_RS03390 at 738.493 kb on - strand, within RALBFv3_RS03390 at 738.493 kb on - strand, within RALBFv3_RS03390 at 738.500 kb on - strand, within RALBFv3_RS03390 at 738.565 kb on - strand, within RALBFv3_RS03390 at 738.682 kb on + strand, within RALBFv3_RS03390 at 738.682 kb on + strand, within RALBFv3_RS03390 at 738.682 kb on + strand, within RALBFv3_RS03390 at 738.683 kb on - strand, within RALBFv3_RS03390 at 738.746 kb on - strand, within RALBFv3_RS03390 at 739.885 kb on + strand at 740.348 kb on - strand at 740.363 kb on + strand at 740.364 kb on - strand at 740.364 kb on - strand at 740.429 kb on + strand at 740.429 kb on + strand at 740.569 kb on + strand at 740.604 kb on + strand at 740.635 kb on + strand at 740.635 kb on + strand at 740.636 kb on - strand at 740.636 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 737,566 + -0.7 737,579 - -0.3 737,683 + +0.1 737,747 + RALBFv3_RS03390 0.11 +0.5 737,984 - RALBFv3_RS03390 0.21 -0.5 737,984 - RALBFv3_RS03390 0.21 -0.5 738,044 + RALBFv3_RS03390 0.23 -0.6 738,045 - RALBFv3_RS03390 0.23 -2.3 738,060 - RALBFv3_RS03390 0.24 -0.3 738,060 - RALBFv3_RS03390 0.24 -1.2 738,143 + RALBFv3_RS03390 0.28 +0.7 738,143 + RALBFv3_RS03390 0.28 -0.4 738,144 - RALBFv3_RS03390 0.28 +0.3 738,144 - RALBFv3_RS03390 0.28 +1.0 738,144 - RALBFv3_RS03390 0.28 +1.0 738,148 + RALBFv3_RS03390 0.28 +0.9 738,149 - RALBFv3_RS03390 0.28 +0.4 738,149 - RALBFv3_RS03390 0.28 -1.9 738,149 - RALBFv3_RS03390 0.28 -0.6 738,226 + RALBFv3_RS03390 0.31 -0.0 738,260 - RALBFv3_RS03390 0.33 +1.9 738,277 + RALBFv3_RS03390 0.33 -1.0 738,278 - RALBFv3_RS03390 0.33 +1.1 738,301 - RALBFv3_RS03390 0.34 -3.4 738,367 + RALBFv3_RS03390 0.37 -0.3 738,391 + RALBFv3_RS03390 0.38 +1.6 738,391 + RALBFv3_RS03390 0.38 +0.3 738,391 + RALBFv3_RS03390 0.38 +0.6 738,391 + RALBFv3_RS03390 0.38 +0.2 738,451 - RALBFv3_RS03390 0.41 +0.2 738,488 + RALBFv3_RS03390 0.42 -1.4 738,488 + RALBFv3_RS03390 0.42 -1.3 738,488 + RALBFv3_RS03390 0.42 -0.6 738,488 + RALBFv3_RS03390 0.42 -0.6 738,488 + RALBFv3_RS03390 0.42 +0.7 738,488 + RALBFv3_RS03390 0.42 +0.2 738,489 - RALBFv3_RS03390 0.43 -0.7 738,489 - RALBFv3_RS03390 0.43 +0.4 738,492 + RALBFv3_RS03390 0.43 +0.3 738,492 + RALBFv3_RS03390 0.43 -0.5 738,492 + RALBFv3_RS03390 0.43 -0.1 738,492 + RALBFv3_RS03390 0.43 -0.2 738,492 + RALBFv3_RS03390 0.43 +4.5 738,492 + RALBFv3_RS03390 0.43 -2.0 738,492 + RALBFv3_RS03390 0.43 -0.6 738,492 + RALBFv3_RS03390 0.43 -1.0 738,493 - RALBFv3_RS03390 0.43 -0.8 738,493 - RALBFv3_RS03390 0.43 -0.3 738,493 - RALBFv3_RS03390 0.43 -0.9 738,493 - RALBFv3_RS03390 0.43 +0.5 738,500 - RALBFv3_RS03390 0.43 +0.5 738,565 - RALBFv3_RS03390 0.46 -0.5 738,682 + RALBFv3_RS03390 0.51 -0.3 738,682 + RALBFv3_RS03390 0.51 +1.5 738,682 + RALBFv3_RS03390 0.51 +1.2 738,683 - RALBFv3_RS03390 0.51 +0.1 738,746 - RALBFv3_RS03390 0.54 -0.7 739,885 + +1.7 740,348 - -0.4 740,363 + +1.3 740,364 - -0.2 740,364 - +0.1 740,429 + +0.4 740,429 + -0.1 740,569 + +1.1 740,604 + -0.3 740,635 + +2.2 740,635 + -1.1 740,636 - -0.5 740,636 - -0.2
Or see this region's nucleotide sequence