Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS00955 and RALBFv3_RS00960 are separated by 310 nucleotides RALBFv3_RS00960 and RALBFv3_RS00965 are separated by 26 nucleotides RALBFv3_RS00965 and RALBFv3_RS00970 overlap by 1 nucleotides
RALBFv3_RS00955: RALBFv3_RS00955 - glutathione S-transferase, at 212,170 to 212,829
_RS00955
RALBFv3_RS00960: RALBFv3_RS00960 - polyhydroxyalkanoate depolymerase, at 213,140 to 214,468
_RS00960
RALBFv3_RS00965: RALBFv3_RS00965 - phosphodiesterase, at 214,495 to 215,343
_RS00965
RALBFv3_RS00970: RALBFv3_RS00970 - ABC transporter ATP-binding protein, at 215,343 to 216,416
_RS00970
Position (kb) 213
214
215 Strain fitness (log2 ratio) -1
0
1 at 212.331 kb on - strand, within RALBFv3_RS00955 at 212.331 kb on - strand, within RALBFv3_RS00955 at 212.604 kb on - strand, within RALBFv3_RS00955 at 212.787 kb on - strand at 212.829 kb on + strand at 212.995 kb on - strand at 213.551 kb on + strand, within RALBFv3_RS00960 at 213.603 kb on - strand, within RALBFv3_RS00960 at 214.023 kb on - strand, within RALBFv3_RS00960 at 214.023 kb on - strand, within RALBFv3_RS00960 at 214.056 kb on - strand, within RALBFv3_RS00960 at 214.189 kb on + strand, within RALBFv3_RS00960 at 214.190 kb on - strand, within RALBFv3_RS00960 at 214.247 kb on + strand, within RALBFv3_RS00960 at 214.325 kb on + strand, within RALBFv3_RS00960 at 214.556 kb on + strand at 214.557 kb on - strand at 215.288 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 212,331 - RALBFv3_RS00955 0.24 +1.4 212,331 - RALBFv3_RS00955 0.24 -0.0 212,604 - RALBFv3_RS00955 0.66 +0.7 212,787 - +1.3 212,829 + -0.1 212,995 - +0.5 213,551 + RALBFv3_RS00960 0.31 -0.8 213,603 - RALBFv3_RS00960 0.35 +0.3 214,023 - RALBFv3_RS00960 0.66 +1.1 214,023 - RALBFv3_RS00960 0.66 +0.0 214,056 - RALBFv3_RS00960 0.69 -1.0 214,189 + RALBFv3_RS00960 0.79 -0.4 214,190 - RALBFv3_RS00960 0.79 -0.5 214,247 + RALBFv3_RS00960 0.83 +1.2 214,325 + RALBFv3_RS00960 0.89 -0.1 214,556 + +0.9 214,557 - -0.9 215,288 + -0.8
Or see this region's nucleotide sequence