Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08395

Experiment: Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Vitamin FREE

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Vitamin FREE
1,543,920	-				-0.6
1,543,921	+				+0.6
1,543,921	+				+0.7
1,543,936	+				-2.0
1,543,990	-		MMJJ_RS08380	0.28	-2.4
1,544,018	+				+0.1
1,544,018	+		MMJJ_RS08380	0.39	-1.9
1,544,018	+		MMJJ_RS08380	0.39	-1.8
1,544,090	+		MMJJ_RS08380	0.66	+0.7
1,544,313	+		MMJJ_RS08385	0.31	-3.4
1,544,317	+		MMJJ_RS08385	0.32	+2.9
1,544,320	+		MMJJ_RS08385	0.33	+0.8
1,544,347	+		MMJJ_RS08385	0.41	-1.5
1,544,358	-		MMJJ_RS08385	0.44	+1.4
1,544,376	-		MMJJ_RS08385	0.49	-1.1
1,544,377	+		MMJJ_RS08385	0.49	-1.7
1,544,382	-		MMJJ_RS08385	0.50	+0.7
1,544,382	-		MMJJ_RS08385	0.50	+1.5
1,544,382	-		MMJJ_RS08385	0.50	-1.8
1,544,383	+		MMJJ_RS08385	0.51	-1.9
1,544,391	+		MMJJ_RS08385	0.53	-2.4
1,544,428	+		MMJJ_RS08385	0.63	+0.8
1,544,448	-		MMJJ_RS08385	0.69	-0.4
1,544,449	+		MMJJ_RS08385	0.69	-1.3
1,544,491	+		MMJJ_RS08385	0.81	-2.1
1,544,547	-				+1.4
1,544,559	-				-2.2
1,544,559	-				+1.1
1,544,560	+				+1.2
1,544,560	+				+1.6
1,544,587	-				+1.3
1,544,587	-				+1.5
1,544,588	+				-3.1
1,544,604	-		MMJJ_RS08390	0.10	+0.1
1,544,627	+		MMJJ_RS08390	0.17	-1.5
1,544,629	-		MMJJ_RS08390	0.18	-2.9
1,544,633	+		MMJJ_RS08390	0.19	+0.6
1,544,790	+		MMJJ_RS08390	0.69	+1.1
1,544,823	+		MMJJ_RS08390	0.80	-1.1
1,544,916	-				-1.9
1,544,921	-				+1.7
1,544,921	-				+0.9
1,544,922	+				-2.1
1,544,922	+				+1.2
1,544,922	+				+1.1
1,544,928	-				-1.1
1,544,932	-				+1.9
1,544,932	-				-3.0
1,545,003	-				-0.2
1,545,032	-		MMJJ_RS08395	0.12	+1.1
1,545,121	-		MMJJ_RS08395	0.22	+0.9
1,545,212	+		MMJJ_RS08395	0.32	-2.2
1,545,237	-		MMJJ_RS08395	0.35	-2.9
1,545,238	+		MMJJ_RS08395	0.35	+1.6
1,545,249	-		MMJJ_RS08395	0.36	-3.6
1,545,250	+		MMJJ_RS08395	0.36	-1.6
1,545,251	-		MMJJ_RS08395	0.37	-0.7
1,545,251	-		MMJJ_RS08395	0.37	-0.3
1,545,251	-		MMJJ_RS08395	0.37	+0.6
1,545,251	-		MMJJ_RS08395	0.37	+1.7
1,545,251	-		MMJJ_RS08395	0.37	+1.7
1,545,251	-		MMJJ_RS08395	0.37	+0.7
1,545,252	+		MMJJ_RS08395	0.37	-0.6
1,545,252	+		MMJJ_RS08395	0.37	+0.8
1,545,252	+		MMJJ_RS08395	0.37	-0.8
1,545,252	+		MMJJ_RS08395	0.37	+1.6
1,545,254	-		MMJJ_RS08395	0.37	+0.1
1,545,254	-		MMJJ_RS08395	0.37	-2.0
1,545,254	-		MMJJ_RS08395	0.37	+1.3
1,545,254	-		MMJJ_RS08395	0.37	-1.6
1,545,254	-		MMJJ_RS08395	0.37	+1.4
1,545,255	+		MMJJ_RS08395	0.37	+1.3
1,545,255	+		MMJJ_RS08395	0.37	-2.2
1,545,257	+		MMJJ_RS08395	0.37	-1.3
1,545,321	-		MMJJ_RS08395	0.44	-1.1
1,545,322	+		MMJJ_RS08395	0.44	+1.3
1,545,329	+		MMJJ_RS08395	0.45	-1.5
1,545,337	+		MMJJ_RS08395	0.46	-3.4
1,545,337	+		MMJJ_RS08395	0.46	+0.5
1,545,343	-		MMJJ_RS08395	0.47	+0.6
1,545,343	-		MMJJ_RS08395	0.47	-1.5
1,545,344	+		MMJJ_RS08395	0.47	-2.4
1,545,344	+		MMJJ_RS08395	0.47	-1.5
1,545,347	-		MMJJ_RS08395	0.47	+1.0
1,545,359	-		MMJJ_RS08395	0.48	-1.8
1,545,431	-		MMJJ_RS08395	0.56	+0.9
1,545,432	+		MMJJ_RS08395	0.57	+1.3
1,545,436	-		MMJJ_RS08395	0.57	-0.9
1,545,436	-		MMJJ_RS08395	0.57	-0.7
1,545,436	-		MMJJ_RS08395	0.57	+1.3
1,545,472	+		MMJJ_RS08395	0.61	+1.2
1,545,473	-		MMJJ_RS08395	0.61	+0.4
1,545,473	-		MMJJ_RS08395	0.61	+1.1
1,545,473	-		MMJJ_RS08395	0.61	+0.9
1,545,473	-		MMJJ_RS08395	0.61	+0.7
1,545,505	-		MMJJ_RS08395	0.65	+1.0
1,545,505	-		MMJJ_RS08395	0.65	+1.7
1,545,505	-		MMJJ_RS08395	0.65	+0.7
1,545,510	-		MMJJ_RS08395	0.65	+1.5
1,545,510	-		MMJJ_RS08395	0.65	-0.5
1,545,510	-		MMJJ_RS08395	0.65	+0.5
1,545,511	+		MMJJ_RS08395	0.65	+1.5
1,545,567	+		MMJJ_RS08395	0.71	+1.4
1,545,576	-		MMJJ_RS08395	0.72	+1.8
1,545,577	+		MMJJ_RS08395	0.73	-1.1
1,545,580	-		MMJJ_RS08395	0.73	+0.8
1,545,580	-		MMJJ_RS08395	0.73	-3.5
1,545,617	+		MMJJ_RS08395	0.77	+1.3
1,545,617	+		MMJJ_RS08395	0.77	+0.5
1,545,621	-		MMJJ_RS08395	0.77	+1.3
1,545,640	+		MMJJ_RS08395	0.79	-4.4
1,545,640	+		MMJJ_RS08395	0.79	+0.0
1,545,640	+		MMJJ_RS08395	0.79	+1.4
1,545,743	-				+1.4
1,545,772	+				+1.1
1,545,804	+				-1.4
1,545,828	-				+1.7
1,545,839	-				+1.1
1,545,862	-				+1.3
1,545,879	-				-2.1
1,545,915	-		MMJJ_RS08400	0.13	-0.9
1,546,054	-		MMJJ_RS08400	0.37	-2.4
1,546,055	+		MMJJ_RS08400	0.37	+0.5
1,546,091	-		MMJJ_RS08400	0.44	+1.3
1,546,132	+		MMJJ_RS08400	0.51	-0.6
1,546,392	-				+1.1
1,546,393	+				+1.9
1,546,402	+				-1.8
1,546,437	-				+0.9
1,546,437	-				+0.2
1,546,438	+				+4.0
1,546,438	+				+1.5
1,546,443	+				-1.8
1,546,464	-				+1.7
1,546,464	-				+1.7
1,546,465	+				+1.2
1,546,466	-				+1.2
1,546,466	-				-1.5
1,546,466	-				+1.3
1,546,466	-				+0.7
1,546,466	-				-0.2
1,546,466	-				-0.9
1,546,466	-				+1.0
1,546,466	-				-1.5
1,546,466	-				+0.1
1,546,466	-				-1.2
1,546,466	-				-2.5
1,546,467	+				-1.5
1,546,467	+				-0.3
1,546,467	+				+1.1
1,546,467	+				+0.2
1,546,467	+				-2.6
1,546,467	+				-1.3
1,546,467	+				-0.5
1,546,467	+				+1.0
1,546,467	+				+1.9
1,546,467	+				-2.4
1,546,468	-				+2.5
1,546,468	-				+1.0
1,546,468	-				-1.6
1,546,468	-				+0.8
1,546,468	-				+0.7
1,546,468	-				-2.0
1,546,469	+				-2.8
1,546,469	+				+0.7
1,546,469	+				-1.7
1,546,469	+				+1.3
1,546,469	+				+0.9
1,546,469	+				+1.6
1,546,469	+				+0.8
1,546,469	+				+1.5
1,546,469	+				+2.3
1,546,469	+				+1.2
1,546,485	-				-2.9
1,546,487	-				-0.9
1,546,488	+				+1.7
1,546,489	-				+1.7
1,546,489	-				-1.7
1,546,490	+				-1.6
1,546,490	+				-0.1
1,546,490	+				+1.9
1,546,490	+				-2.3
1,546,492	-				+0.9
1,546,493	+				+0.9
1,546,495	+				+1.2
1,546,495	+				+1.7
1,546,495	+				+3.0
1,546,502	-				+0.1
1,546,520	-				+0.5
1,546,520	-				-0.1
1,546,520	-				-0.8
1,546,521	+				-1.6
1,546,521	+				-2.7
1,546,528	+				-1.9
1,546,530	-				-2.4
1,546,531	+				+0.1
1,546,533	-				-0.7
1,546,533	-				-1.9
1,546,533	-				-0.4
1,546,533	-				-3.2
1,546,534	+				-1.9
1,546,535	-				-2.8
1,546,535	-				-2.1
1,546,535	-				-1.5
1,546,535	-				-2.5
1,546,535	-				-1.0
1,546,535	-				-1.5
1,546,535	-				-4.1
1,546,535	-				-2.9
1,546,536	+				+0.1
1,546,536	+				-3.7
1,546,536	+				-1.3
1,546,536	+				-2.4
1,546,536	+				-1.9
1,546,536	+				-1.5
1,546,536	+				+0.1
1,546,536	+				-0.9
1,546,536	+				-0.8
1,546,539	-				-2.7
1,546,539	-				-2.8
1,546,539	-				-0.6
1,546,539	-				-3.6
1,546,539	-				-1.3
1,546,539	-				+1.0
1,546,539	-				-3.2
1,546,539	-				-0.9
1,546,539	-				-1.4
1,546,549	-				+0.1
1,546,549	-				-2.6
1,546,549	-				-2.4
1,546,549	-				-1.9
1,546,550	+				-2.1
1,546,550	+				-0.9
1,546,550	+				-0.9
1,546,550	+				-2.1
1,546,556	-				-2.7
1,546,556	-				-4.0
1,546,566	+				-2.5
1,546,616	-				-0.9
1,546,617	+				-0.9
1,546,617	+				+0.1
1,546,647	-				-3.8
1,546,683	+				-2.5
1,546,716	+				-3.6
1,546,729	-				-2.2
1,546,730	+				-2.4
1,546,732	-				-4.2
1,546,732	-				-4.4
1,546,733	+				-2.6
1,546,748	-				-1.9
1,546,760	+		MMJJ_RS08405	0.10	-2.4
1,546,814	-		MMJJ_RS08405	0.15	-1.5
1,546,814	-		MMJJ_RS08405	0.15	-3.6
1,546,820	+		MMJJ_RS08405	0.16	-2.2