Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS04450

Experiment: Polygalacturonic 5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Polygalacturonic 5 mg/ml (C)
29,984	+				+3.0
29,985	-				-0.4
29,986	+		HMPREF1058_RS04455	0.10	-1.0
30,042	-		HMPREF1058_RS04455	0.18	+1.4
30,171	-		HMPREF1058_RS04455	0.37	-1.3
30,177	-		HMPREF1058_RS04455	0.38	-0.4
30,180	-		HMPREF1058_RS04455	0.39	+0.6
30,186	-		HMPREF1058_RS04455	0.40	-0.2
30,193	+		HMPREF1058_RS04455	0.41	+0.2
30,200	+		HMPREF1058_RS04455	0.42	+0.1
30,335	+		HMPREF1058_RS04455	0.62	-0.9
30,335	+		HMPREF1058_RS04455	0.62	-0.2
30,339	+		HMPREF1058_RS04455	0.62	-1.2
30,434	-		HMPREF1058_RS04455	0.76	+0.1
30,479	+		HMPREF1058_RS04455	0.83	-0.3
30,479	+		HMPREF1058_RS04455	0.83	+0.5
30,479	+		HMPREF1058_RS04455	0.83	-2.9
30,479	+		HMPREF1058_RS04455	0.83	+0.3
30,479	+		HMPREF1058_RS04455	0.83	-0.1
30,479	+		HMPREF1058_RS04455	0.83	-0.5
30,479	+		HMPREF1058_RS04455	0.83	+1.4
30,480	-		HMPREF1058_RS04455	0.83	-0.7
30,488	-		HMPREF1058_RS04455	0.84	-1.2
30,536	-				+0.3
30,562	+				-1.6
30,669	+				+0.2
30,750	+				-0.4
30,751	-				+0.4
30,781	-				+1.4
30,782	+				-0.2
30,783	-				+0.8
30,832	+				-1.1
30,851	+				+2.3
30,856	+				-0.6
30,857	-				+3.0
30,940	+				-1.7
30,947	+				+0.5
30,948	-				-0.7
30,953	+				-1.0
30,953	+				+0.1
30,966	+				+0.6
30,966	+				+0.4
30,966	+				+0.8
30,983	-				+1.2
31,127	-		HMPREF1058_RS04450	0.19	+0.3
31,148	+		HMPREF1058_RS04450	0.21	+0.7
31,148	+		HMPREF1058_RS04450	0.21	-0.2
31,155	-		HMPREF1058_RS04450	0.21	+1.6
31,297	-		HMPREF1058_RS04450	0.34	+0.4
31,328	+		HMPREF1058_RS04450	0.36	-0.4
31,328	+		HMPREF1058_RS04450	0.36	+1.7
31,328	+		HMPREF1058_RS04450	0.36	-0.2
31,337	+		HMPREF1058_RS04450	0.37	-0.3
31,413	+		HMPREF1058_RS04450	0.44	-1.1
31,418	+		HMPREF1058_RS04450	0.44	+0.6
31,418	+		HMPREF1058_RS04450	0.44	-2.0
31,418	+		HMPREF1058_RS04450	0.44	-2.4
31,418	+		HMPREF1058_RS04450	0.44	-0.2
31,443	-		HMPREF1058_RS04450	0.47	+0.7
31,494	+		HMPREF1058_RS04450	0.51	-0.2
31,494	+		HMPREF1058_RS04450	0.51	-1.0
31,591	+		HMPREF1058_RS04450	0.60	+1.2
31,592	-		HMPREF1058_RS04450	0.60	-1.4
31,592	-				+1.4
31,706	+		HMPREF1058_RS04450	0.70	-2.2
31,707	-		HMPREF1058_RS04450	0.70	+0.0
31,716	-		HMPREF1058_RS04450	0.71	+0.2
31,744	+		HMPREF1058_RS04450	0.73	-0.5
31,786	+		HMPREF1058_RS04450	0.77	+1.0
31,802	+		HMPREF1058_RS04450	0.78	+0.3
31,812	+		HMPREF1058_RS04450	0.79	-1.7
31,813	-		HMPREF1058_RS04450	0.79	-1.1
31,841	-		HMPREF1058_RS04450	0.82	+0.3
31,844	+		HMPREF1058_RS04450	0.82	-1.7
31,844	+		HMPREF1058_RS04450	0.82	+0.2
31,942	-				-0.4
31,942	-				+0.4
31,943	+				-0.1
31,943	+				+0.1
31,943	+				-0.6
31,943	+				+0.0
31,943	+				+1.2
31,944	-				-0.9
31,944	-				-0.7
31,944	-				-0.1
31,988	+				+0.0
32,021	-				-0.8
32,021	-				+0.3
32,024	+				-1.0
32,035	+				-1.6
32,035	+				-1.1
32,036	-				-1.2
32,036	-				-1.3
32,036	-				-0.2
32,036	-				-1.6
32,158	+				+0.0
32,159	-				-0.8
32,170	+				-0.6