Experiment: Polygalacturonic 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01100 and HMPREF1058_RS21550 are separated by 198 nucleotides HMPREF1058_RS21550 and HMPREF1058_RS01095 are separated by 1 nucleotides HMPREF1058_RS01095 and HMPREF1058_RS01090 are separated by 1 nucleotides
HMPREF1058_RS01100: HMPREF1058_RS01100 - DUF4377 domain-containing protein, at 209,901 to 210,764
_RS01100
HMPREF1058_RS21550: HMPREF1058_RS21550 - hypothetical protein, at 210,963 to 211,034
_RS21550
HMPREF1058_RS01095: HMPREF1058_RS01095 - hypothetical protein, at 211,036 to 211,266
_RS01095
HMPREF1058_RS01090: HMPREF1058_RS01090 - DUF4852 domain-containing protein, at 211,268 to 212,422
_RS01090
Position (kb) 211
212 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 210.065 kb on + strand, within HMPREF1058_RS01100 at 210.074 kb on - strand, within HMPREF1058_RS01100 at 210.074 kb on - strand, within HMPREF1058_RS01100 at 210.082 kb on + strand, within HMPREF1058_RS01100 at 210.083 kb on - strand, within HMPREF1058_RS01100 at 210.084 kb on + strand, within HMPREF1058_RS01100 at 210.085 kb on - strand, within HMPREF1058_RS01100 at 210.165 kb on + strand, within HMPREF1058_RS01100 at 210.165 kb on + strand, within HMPREF1058_RS01100 at 210.166 kb on - strand, within HMPREF1058_RS01100 at 210.167 kb on + strand, within HMPREF1058_RS01100 at 210.168 kb on - strand, within HMPREF1058_RS01100 at 210.204 kb on - strand, within HMPREF1058_RS01100 at 210.238 kb on + strand, within HMPREF1058_RS01100 at 210.310 kb on - strand, within HMPREF1058_RS01100 at 210.311 kb on + strand, within HMPREF1058_RS01100 at 210.311 kb on + strand, within HMPREF1058_RS01100 at 210.311 kb on + strand, within HMPREF1058_RS01100 at 210.312 kb on - strand, within HMPREF1058_RS01100 at 210.312 kb on - strand, within HMPREF1058_RS01100 at 210.312 kb on - strand, within HMPREF1058_RS01100 at 210.312 kb on - strand, within HMPREF1058_RS01100 at 210.312 kb on - strand, within HMPREF1058_RS01100 at 210.319 kb on + strand, within HMPREF1058_RS01100 at 210.340 kb on - strand, within HMPREF1058_RS01100 at 210.343 kb on + strand, within HMPREF1058_RS01100 at 210.343 kb on + strand, within HMPREF1058_RS01100 at 210.343 kb on + strand, within HMPREF1058_RS01100 at 210.343 kb on + strand, within HMPREF1058_RS01100 at 210.422 kb on + strand, within HMPREF1058_RS01100 at 210.422 kb on + strand, within HMPREF1058_RS01100 at 210.423 kb on - strand, within HMPREF1058_RS01100 at 210.458 kb on + strand, within HMPREF1058_RS01100 at 210.498 kb on - strand, within HMPREF1058_RS01100 at 210.503 kb on - strand, within HMPREF1058_RS01100 at 210.640 kb on + strand, within HMPREF1058_RS01100 at 210.708 kb on + strand at 210.747 kb on - strand at 210.747 kb on - strand at 210.755 kb on + strand at 210.810 kb on - strand at 210.810 kb on - strand at 210.814 kb on - strand at 210.875 kb on - strand at 210.875 kb on - strand at 210.875 kb on - strand at 210.887 kb on + strand at 210.887 kb on + strand at 210.889 kb on + strand at 210.889 kb on + strand at 210.922 kb on + strand at 210.923 kb on - strand at 210.968 kb on - strand at 210.989 kb on - strand, within HMPREF1058_RS21550 at 211.015 kb on - strand, within HMPREF1058_RS21550 at 211.033 kb on - strand at 211.048 kb on - strand at 211.068 kb on - strand, within HMPREF1058_RS01095 at 211.068 kb on - strand, within HMPREF1058_RS01095 at 211.100 kb on + strand, within HMPREF1058_RS01095 at 211.100 kb on + strand, within HMPREF1058_RS01095 at 211.101 kb on - strand, within HMPREF1058_RS01095 at 211.119 kb on + strand, within HMPREF1058_RS01095 at 211.139 kb on + strand, within HMPREF1058_RS01095 at 211.148 kb on + strand, within HMPREF1058_RS01095 at 211.203 kb on + strand, within HMPREF1058_RS01095 at 211.203 kb on + strand, within HMPREF1058_RS01095 at 211.203 kb on + strand, within HMPREF1058_RS01095 at 211.206 kb on - strand, within HMPREF1058_RS01095 at 211.220 kb on + strand, within HMPREF1058_RS01095 at 211.267 kb on + strand at 211.399 kb on + strand, within HMPREF1058_RS01090 at 211.399 kb on + strand, within HMPREF1058_RS01090 at 211.399 kb on + strand, within HMPREF1058_RS01090 at 211.400 kb on - strand, within HMPREF1058_RS01090 at 211.565 kb on + strand, within HMPREF1058_RS01090 at 211.566 kb on - strand, within HMPREF1058_RS01090 at 211.651 kb on - strand, within HMPREF1058_RS01090 at 211.651 kb on - strand, within HMPREF1058_RS01090 at 211.746 kb on - strand, within HMPREF1058_RS01090 at 211.797 kb on - strand, within HMPREF1058_RS01090 at 211.826 kb on - strand, within HMPREF1058_RS01090 at 211.918 kb on + strand, within HMPREF1058_RS01090 at 211.958 kb on + strand, within HMPREF1058_RS01090 at 212.138 kb on + strand, within HMPREF1058_RS01090 at 212.138 kb on + strand, within HMPREF1058_RS01090 at 212.138 kb on + strand, within HMPREF1058_RS01090 at 212.139 kb on - strand, within HMPREF1058_RS01090 at 212.140 kb on + strand, within HMPREF1058_RS01090 at 212.143 kb on + strand, within HMPREF1058_RS01090 at 212.187 kb on + strand, within HMPREF1058_RS01090 at 212.187 kb on + strand, within HMPREF1058_RS01090 at 212.188 kb on - strand, within HMPREF1058_RS01090 at 212.189 kb on + strand, within HMPREF1058_RS01090 at 212.193 kb on + strand, within HMPREF1058_RS01090 at 212.193 kb on + strand, within HMPREF1058_RS01090 at 212.193 kb on + strand, within HMPREF1058_RS01090 at 212.193 kb on + strand, within HMPREF1058_RS01090 at 212.194 kb on - strand, within HMPREF1058_RS01090 at 212.195 kb on + strand, within HMPREF1058_RS01090 at 212.195 kb on + strand, within HMPREF1058_RS01090 at 212.196 kb on - strand, within HMPREF1058_RS01090 at 212.203 kb on + strand, within HMPREF1058_RS01090
Per-strain Table
Position Strand Gene LocusTag Fraction Polygalacturonic 5 mg/ml (C) remove 210,065 + HMPREF1058_RS01100 0.19 -0.4 210,074 - HMPREF1058_RS01100 0.20 +2.0 210,074 - HMPREF1058_RS01100 0.20 +0.2 210,082 + HMPREF1058_RS01100 0.21 -0.7 210,083 - HMPREF1058_RS01100 0.21 -0.9 210,084 + HMPREF1058_RS01100 0.21 +0.7 210,085 - HMPREF1058_RS01100 0.21 -0.1 210,165 + HMPREF1058_RS01100 0.31 -0.7 210,165 + HMPREF1058_RS01100 0.31 +0.4 210,166 - HMPREF1058_RS01100 0.31 -0.8 210,167 + HMPREF1058_RS01100 0.31 -0.6 210,168 - HMPREF1058_RS01100 0.31 -0.4 210,204 - HMPREF1058_RS01100 0.35 -1.1 210,238 + HMPREF1058_RS01100 0.39 -0.8 210,310 - HMPREF1058_RS01100 0.47 +0.9 210,311 + HMPREF1058_RS01100 0.47 -1.7 210,311 + HMPREF1058_RS01100 0.47 -0.9 210,311 + HMPREF1058_RS01100 0.47 -0.3 210,312 - HMPREF1058_RS01100 0.48 +1.7 210,312 - HMPREF1058_RS01100 0.48 +0.2 210,312 - HMPREF1058_RS01100 0.48 +1.0 210,312 - HMPREF1058_RS01100 0.48 +0.2 210,312 - HMPREF1058_RS01100 0.48 -1.1 210,319 + HMPREF1058_RS01100 0.48 -1.1 210,340 - HMPREF1058_RS01100 0.51 -1.5 210,343 + HMPREF1058_RS01100 0.51 +1.8 210,343 + HMPREF1058_RS01100 0.51 -0.8 210,343 + HMPREF1058_RS01100 0.51 +1.0 210,343 + HMPREF1058_RS01100 0.51 -0.1 210,422 + HMPREF1058_RS01100 0.60 -1.4 210,422 + HMPREF1058_RS01100 0.60 +1.6 210,423 - HMPREF1058_RS01100 0.60 -1.4 210,458 + HMPREF1058_RS01100 0.64 +0.2 210,498 - HMPREF1058_RS01100 0.69 -0.4 210,503 - HMPREF1058_RS01100 0.70 -1.7 210,640 + HMPREF1058_RS01100 0.86 -0.8 210,708 + +1.4 210,747 - -3.0 210,747 - -1.9 210,755 + +0.3 210,810 - -0.6 210,810 - +0.6 210,814 - -1.1 210,875 - -0.6 210,875 - -1.2 210,875 - +0.8 210,887 + -0.3 210,887 + -0.3 210,889 + +0.5 210,889 + -0.4 210,922 + +0.4 210,923 - -0.6 210,968 - -0.8 210,989 - HMPREF1058_RS21550 0.36 +1.4 211,015 - HMPREF1058_RS21550 0.72 +1.1 211,033 - -1.0 211,048 - -0.7 211,068 - HMPREF1058_RS01095 0.14 -0.2 211,068 - HMPREF1058_RS01095 0.14 +0.2 211,100 + HMPREF1058_RS01095 0.28 -1.6 211,100 + HMPREF1058_RS01095 0.28 -0.6 211,101 - HMPREF1058_RS01095 0.28 -2.3 211,119 + HMPREF1058_RS01095 0.36 +0.9 211,139 + HMPREF1058_RS01095 0.45 +0.4 211,148 + HMPREF1058_RS01095 0.48 -1.3 211,203 + HMPREF1058_RS01095 0.72 +1.2 211,203 + HMPREF1058_RS01095 0.72 -0.5 211,203 + HMPREF1058_RS01095 0.72 +0.7 211,206 - HMPREF1058_RS01095 0.74 +1.2 211,220 + HMPREF1058_RS01095 0.80 +0.4 211,267 + -0.4 211,399 + HMPREF1058_RS01090 0.11 -1.9 211,399 + HMPREF1058_RS01090 0.11 -0.2 211,399 + HMPREF1058_RS01090 0.11 +0.3 211,400 - HMPREF1058_RS01090 0.11 +1.0 211,565 + HMPREF1058_RS01090 0.26 +0.7 211,566 - HMPREF1058_RS01090 0.26 -0.0 211,651 - HMPREF1058_RS01090 0.33 -1.6 211,651 - HMPREF1058_RS01090 0.33 -0.4 211,746 - HMPREF1058_RS01090 0.41 -0.3 211,797 - HMPREF1058_RS01090 0.46 +0.3 211,826 - HMPREF1058_RS01090 0.48 +0.2 211,918 + HMPREF1058_RS01090 0.56 +0.2 211,958 + HMPREF1058_RS01090 0.60 +0.7 212,138 + HMPREF1058_RS01090 0.75 -1.9 212,138 + HMPREF1058_RS01090 0.75 -0.7 212,138 + HMPREF1058_RS01090 0.75 +0.8 212,139 - HMPREF1058_RS01090 0.75 -0.7 212,140 + HMPREF1058_RS01090 0.75 +0.0 212,143 + HMPREF1058_RS01090 0.76 +0.5 212,187 + HMPREF1058_RS01090 0.80 +1.1 212,187 + HMPREF1058_RS01090 0.80 -1.4 212,188 - HMPREF1058_RS01090 0.80 -1.3 212,189 + HMPREF1058_RS01090 0.80 -0.1 212,193 + HMPREF1058_RS01090 0.80 +0.7 212,193 + HMPREF1058_RS01090 0.80 +0.1 212,193 + HMPREF1058_RS01090 0.80 +0.3 212,193 + HMPREF1058_RS01090 0.80 +2.0 212,194 - HMPREF1058_RS01090 0.80 +1.5 212,195 + HMPREF1058_RS01090 0.80 -0.2 212,195 + HMPREF1058_RS01090 0.80 -1.0 212,196 - HMPREF1058_RS01090 0.80 -0.6 212,203 + HMPREF1058_RS01090 0.81 +1.2
Or see this region's nucleotide sequence