Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05812 and H281DRAFT_05813 overlap by 4 nucleotides H281DRAFT_05813 and H281DRAFT_05814 are separated by 201 nucleotides H281DRAFT_05814 and H281DRAFT_05815 are separated by 97 nucleotides
H281DRAFT_05812: H281DRAFT_05812 - biotin-dependent carboxylase uncharacterized domain-containing protein, at 89,102 to 90,154
_05812
H281DRAFT_05813: H281DRAFT_05813 - sensor histidine kinase inhibitor, KipI family, at 90,151 to 90,804
_05813
H281DRAFT_05814: H281DRAFT_05814 - Predicted transcription regulator, contains HTH domain, MarR family, at 91,006 to 91,518
_05814
H281DRAFT_05815: H281DRAFT_05815 - 5,10-methenyltetrahydrofolate synthetase, at 91,616 to 92,158
_05815
Position (kb) 90
91 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 89.153 kb on + strand at 89.154 kb on - strand at 89.178 kb on + strand at 89.179 kb on - strand at 89.214 kb on + strand, within H281DRAFT_05812 at 89.474 kb on + strand, within H281DRAFT_05812 at 89.527 kb on - strand, within H281DRAFT_05812 at 89.793 kb on - strand, within H281DRAFT_05812 at 89.793 kb on - strand, within H281DRAFT_05812 at 90.160 kb on + strand at 90.160 kb on + strand at 90.288 kb on - strand, within H281DRAFT_05813 at 90.390 kb on + strand, within H281DRAFT_05813 at 90.391 kb on - strand, within H281DRAFT_05813 at 90.391 kb on - strand, within H281DRAFT_05813 at 90.391 kb on - strand, within H281DRAFT_05813 at 90.392 kb on + strand, within H281DRAFT_05813 at 90.392 kb on + strand, within H281DRAFT_05813 at 90.392 kb on + strand, within H281DRAFT_05813 at 90.393 kb on - strand, within H281DRAFT_05813 at 90.393 kb on - strand, within H281DRAFT_05813 at 90.393 kb on - strand, within H281DRAFT_05813 at 90.431 kb on + strand, within H281DRAFT_05813 at 90.431 kb on + strand, within H281DRAFT_05813 at 90.432 kb on - strand, within H281DRAFT_05813 at 90.432 kb on - strand, within H281DRAFT_05813 at 90.432 kb on - strand, within H281DRAFT_05813 at 90.525 kb on - strand, within H281DRAFT_05813 at 90.890 kb on - strand at 90.890 kb on - strand at 90.890 kb on - strand at 90.890 kb on - strand at 90.905 kb on + strand at 90.906 kb on - strand at 90.923 kb on - strand at 90.923 kb on - strand at 90.963 kb on + strand at 91.247 kb on + strand, within H281DRAFT_05814 at 91.247 kb on + strand, within H281DRAFT_05814 at 91.247 kb on + strand, within H281DRAFT_05814 at 91.247 kb on + strand, within H281DRAFT_05814 at 91.247 kb on + strand, within H281DRAFT_05814 at 91.248 kb on - strand, within H281DRAFT_05814 at 91.248 kb on - strand, within H281DRAFT_05814 at 91.248 kb on - strand, within H281DRAFT_05814 at 91.248 kb on - strand, within H281DRAFT_05814 at 91.248 kb on - strand, within H281DRAFT_05814 at 91.248 kb on - strand, within H281DRAFT_05814 at 91.254 kb on + strand, within H281DRAFT_05814 at 91.254 kb on + strand at 91.255 kb on - strand, within H281DRAFT_05814 at 91.255 kb on - strand, within H281DRAFT_05814 at 91.270 kb on + strand, within H281DRAFT_05814 at 91.270 kb on + strand, within H281DRAFT_05814 at 91.290 kb on - strand, within H281DRAFT_05814 at 91.290 kb on - strand, within H281DRAFT_05814 at 91.294 kb on - strand, within H281DRAFT_05814 at 91.301 kb on - strand, within H281DRAFT_05814 at 91.305 kb on - strand, within H281DRAFT_05814 at 91.305 kb on - strand, within H281DRAFT_05814 at 91.305 kb on - strand, within H281DRAFT_05814 at 91.483 kb on + strand at 91.483 kb on + strand at 91.483 kb on + strand at 91.483 kb on + strand at 91.483 kb on + strand at 91.483 kb on + strand at 91.484 kb on - strand at 91.484 kb on - strand at 91.484 kb on - strand at 91.484 kb on - strand at 91.515 kb on - strand at 91.517 kb on - strand at 91.517 kb on - strand at 91.569 kb on + strand at 91.570 kb on - strand at 91.570 kb on - strand at 91.618 kb on - strand at 91.679 kb on + strand, within H281DRAFT_05815 at 91.679 kb on + strand, within H281DRAFT_05815 at 91.680 kb on - strand, within H281DRAFT_05815 at 91.680 kb on - strand, within H281DRAFT_05815 at 91.717 kb on - strand, within H281DRAFT_05815
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 89,153 + +0.2 89,154 - -0.6 89,178 + -0.6 89,179 - -0.5 89,214 + H281DRAFT_05812 0.11 -0.2 89,474 + H281DRAFT_05812 0.35 +1.1 89,527 - H281DRAFT_05812 0.40 -0.6 89,793 - H281DRAFT_05812 0.66 -0.8 89,793 - H281DRAFT_05812 0.66 +0.1 90,160 + +0.3 90,160 + +0.2 90,288 - H281DRAFT_05813 0.21 -0.6 90,390 + H281DRAFT_05813 0.37 -0.4 90,391 - H281DRAFT_05813 0.37 -0.8 90,391 - H281DRAFT_05813 0.37 -0.5 90,391 - H281DRAFT_05813 0.37 +0.6 90,392 + H281DRAFT_05813 0.37 +0.8 90,392 + H281DRAFT_05813 0.37 -0.1 90,392 + H281DRAFT_05813 0.37 +0.6 90,393 - H281DRAFT_05813 0.37 +0.3 90,393 - H281DRAFT_05813 0.37 +0.3 90,393 - H281DRAFT_05813 0.37 +0.3 90,431 + H281DRAFT_05813 0.43 +0.8 90,431 + H281DRAFT_05813 0.43 -2.1 90,432 - H281DRAFT_05813 0.43 +0.8 90,432 - H281DRAFT_05813 0.43 +0.5 90,432 - H281DRAFT_05813 0.43 +0.4 90,525 - H281DRAFT_05813 0.57 +1.4 90,890 - -0.2 90,890 - -1.1 90,890 - -0.5 90,890 - -1.1 90,905 + -0.1 90,906 - -0.1 90,923 - -0.2 90,923 - -0.5 90,963 + -0.0 91,247 + H281DRAFT_05814 0.47 -2.0 91,247 + H281DRAFT_05814 0.47 -1.9 91,247 + H281DRAFT_05814 0.47 -0.7 91,247 + H281DRAFT_05814 0.47 +0.5 91,247 + H281DRAFT_05814 0.47 -0.7 91,248 - H281DRAFT_05814 0.47 -4.3 91,248 - H281DRAFT_05814 0.47 -1.9 91,248 - H281DRAFT_05814 0.47 -1.5 91,248 - H281DRAFT_05814 0.47 -1.0 91,248 - H281DRAFT_05814 0.47 -0.5 91,248 - H281DRAFT_05814 0.47 -3.1 91,254 + H281DRAFT_05814 0.48 -3.1 91,254 + +2.2 91,255 - H281DRAFT_05814 0.49 -2.2 91,255 - H281DRAFT_05814 0.49 -1.3 91,270 + H281DRAFT_05814 0.51 -2.0 91,270 + H281DRAFT_05814 0.51 -0.6 91,290 - H281DRAFT_05814 0.55 -3.0 91,290 - H281DRAFT_05814 0.55 -0.9 91,294 - H281DRAFT_05814 0.56 -2.2 91,301 - H281DRAFT_05814 0.58 -1.1 91,305 - H281DRAFT_05814 0.58 -2.3 91,305 - H281DRAFT_05814 0.58 -2.2 91,305 - H281DRAFT_05814 0.58 -0.9 91,483 + -0.7 91,483 + -2.4 91,483 + -0.5 91,483 + -0.2 91,483 + -2.1 91,483 + -1.2 91,484 - -0.7 91,484 - -1.4 91,484 - -1.1 91,484 - -0.6 91,515 - -1.8 91,517 - -0.5 91,517 - +0.4 91,569 + +0.4 91,570 - -0.0 91,570 - +0.1 91,618 - +0.1 91,679 + H281DRAFT_05815 0.12 -2.6 91,679 + H281DRAFT_05815 0.12 -3.6 91,680 - H281DRAFT_05815 0.12 -3.2 91,680 - H281DRAFT_05815 0.12 -2.8 91,717 - H281DRAFT_05815 0.19 -3.5
Or see this region's nucleotide sequence